Version 2.25.0
Genome Detective Platform

Analysis Results

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Analysis of SRR3458562_Metagenome_example

Paired-end short reads
SRR3458562_Metagenome_example_1.fastq.gz (953.48 MB), SRR3458562_Metagenome_example_2.fastq.gz (996.6 MB)
Default Virus Analysis (metagenome)
2022-12-02 13:08:19 UTC
panviral2.43

Statistics

151
50 - 136
# Reads % of Reads
Input file 18111492 100.0%
After QC
 15498002 85.6%
After filtering
 6874446 38.0%
Mapped back to contigs 6710040 37.0%

Quality Control (QC) reports

Assignments

# Reads
Depth of Coverage
NT Identity
AA Identity
2149356
37891.8
79.2%
89.3%
N/A
Rotavirus A (11 segments out of 11)
hide segment info
1587768
9437.6
78.8%
84.8%
Rotavirus A (segment 1)
171572
5815.6
86.0%
97.2%
N/A
Rotavirus A (segment 2)
116495
4809.4
81.4%
95.1%
N/A
Rotavirus A (segment 3)
203956
8528.2
77.8%
84.8%
N/A
Rotavirus A (segment 4)
478129
22188.7
70.3%
74.5%
N/A
Rotavirus A (segment 5)
336717
23447.3
54.8%
38.8%
N/A
Rotavirus A (segment 6)
84309
6806.4
88.0%
97.5%
N/A
Rotavirus A (segment 7)
63051
6402.1
79.7%
81.5%
N/A
Rotavirus A (segment 9)
82946
8355.4
76.7%
86.2%
N/A
Rotavirus A (segment 8)
20728
2133.2
80.3%
86.2%
N/A
Rotavirus A (segment 10)
22821
3287.7
91.7%
92.6%
N/A
Rotavirus A (segment 11)
7044
1171.6
90.4%
91.1%
N/A
1232600
24812.6
99.3%
99.1%
N/A
729118
517.7
99.9%
99.9%
N/A
498422
388.3
99.9%
99.9%
N/A
169687
3512.0
98.8%
99.7%
N/A
123659
13.2
99.9%
99.5%
N/A
96411
5154.9
97.6%
97.6%
N/A
56712
231.5
93.3%
95.4%
N/A
18788
22.4
99.9%
99.0%
N/A
14789
22.2
99.9%
99.1%
N/A
3798
10.1
99.9%
99.6%
N/A
3526
1027.4
82.8%
84.8%
N/A
2375
9.7
99.9%
99.5%
N/A
1453
8.6
99.4%
98.9%
N/A
1258
7.3
99.9%
99.2%
N/A
1129
11.5
99.2%
99.1%
N/A
882
9.8
99.7%
98.5%
N/A
840
6.9
99.7%
98.8%
N/A
739
5.8
99.9%
99.2%
N/A
625
7.3
99.6%
99.0%
N/A
575
6.8
99.7%
98.8%
N/A
569
5.1
99.9%
98.9%
N/A
531
7.5
99.8%
98.9%
N/A
435
9.2
99.7%
99.2%
N/A
350
4.8
99.9%
98.7%
N/A
338
4.2
99.9%
98.7%
N/A
313
16.0
66.9%
71.4%
N/A
310
8.0
99.5%
98.9%
N/A
286
8.6
99.6%
98.8%
N/A
277
4.1
99.8%
98.7%
N/A
258
4.6
99.7%
98.6%
N/A
183
5.0
99.9%
98.3%
N/A
17
1.2
98.6%
95.8%
N/A
16
2.1
93.1%
90.6%
N/A
10
1.0
93.9%
91.2%
N/A
4
3.8
74.6%
85.4%
N/A

Discoveries

# Reads
Depth of Coverage
NT Identity
AA Identity
1269
49.8
85.1%
78.8%
N/A
905
24.9
94.9%
95.6%
N/A
850
36.0
94.7%
95.7%
N/A
809
17.6
52.7%
45.8%
N/A
655
18.4
96.8%
95.0%
N/A
491
21.9
96.8%
98.3%
N/A
348
17.3
91.7%
91.3%
N/A
347
13.7
98.1%
99.0%
N/A
336
6.1
99.5%
98.7%
N/A
325
12.8
95.0%
91.3%
N/A
287
23.2
88.0%
88.3%
N/A
277
4.9
99.7%
99.5%
N/A
269
7.4
92.3%
91.0%
N/A
255
7.6
99.6%
98.6%
N/A
236
24.2
89.8%
90.9%
N/A
213
86.4
91.6%
92.9%
N/A
211
15.2
97.4%
97.7%
N/A
196
15.3
91.6%
91.3%
N/A
193
11.5
99.6%
98.6%
N/A
192
18.2
94.7%
90.6%
N/A
184
14.4
90.5%
87.9%
N/A
173
16.8
90.0%
95.1%
N/A
173
12.4
96.2%
96.6%
N/A
167
10.1
97.5%
97.5%
N/A
160
16.3
95.2%
94.8%
N/A
158
15.7
93.6%
93.8%
N/A
157
28.1
93.4%
89.1%
N/A
140
7.0
96.7%
96.2%
N/A
137
41.1
94.5%
0.0%
N/A
118
11.4
97.7%
97.3%
N/A
107
62.3
100.0%
100.0%
N/A
105
47.0
89.2%
87.3%
N/A
85
12.1
97.3%
97.8%
N/A
82
4.2
99.9%
98.1%
N/A
80
8.4
96.3%
97.0%
N/A
75
3.6
100.0%
98.5%
N/A
68
18.7
93.9%
90.3%
N/A
63
16.6
94.5%
98.5%
N/A
57
8.2
89.7%
91.3%
N/A
51
5.0
97.0%
97.3%
N/A
44
14.1
92.1%
90.2%
N/A
41
18.7
94.4%
91.7%
N/A
36
8.4
93.7%
90.3%
N/A
31
6.0
95.6%
95.0%
N/A
31
21.3
90.8%
86.8%
N/A
29
4.3
90.0%
92.2%
N/A
27
6.0
99.2%
98.2%
N/A
27
12.7
97.3%
93.3%
N/A
25
4.3
93.0%
80.0%
N/A
25
6.7
99.1%
95.8%
N/A
23
6.3
96.8%
97.7%
N/A
23
9.8
84.1%
83.0%
N/A
22
8.1
75.0%
84.8%
N/A
21
11.4
80.8%
83.7%
N/A
19
7.2
84.5%
86.2%
N/A
18
5.2
98.3%
97.0%
N/A
16
12.4
75.6%
81.8%
N/A
14
11.7
99.1%
94.7%
N/A
14
6.2
77.9%
84.6%
N/A
13
6.2
99.6%
97.6%
N/A
13
9.8
98.3%
97.4%
N/A
12
6.2
80.6%
94.1%
N/A
11
2.4
63.6%
54.6%
N/A
11
1.5
85.1%
79.7%
N/A
10
6.5
98.7%
96.2%
N/A
9
7.3
78.7%
86.7%
N/A
7
2.8
98.4%
95.5%
N/A
6
4.8
80.9%
89.2%
N/A
6
4.6
97.8%
97.9%
N/A
6
4.4
96.3%
97.8%
N/A
6
5.2
94.1%
97.6%
N/A
5
1.2
80.2%
83.6%
N/A
5
2.1
75.1%
79.6%
N/A
4
3.3
87.1%
87.1%
N/A
3
1.0
97.1%
93.3%
N/A
3
2.2
97.8%
97.5%
N/A
3
2.1
97.6%
92.9%
N/A
2
1.5
80.9%
76.1%
N/A
2
1.0
100.0%
100.0%
N/A
1
1.0
83.7%
77.8%
N/A
1
1.0
76.7%
95.5%
N/A
1
1.0
83.7%
93.1%
N/A
1
1.0
94.1%
89.7%
N/A
1
1.0
100.0%
100.0%
N/A
1
1.0
77.9%
84.4%
N/A

Download analysis files

File Actions
Assignment and Discovery Table (CSV)
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Assignment and Discovery Table (XLS)
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Consensus Sequences (FASTA)
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Assignment Consensus Sequences (FASTA)
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Discovery Consensus Sequences (FASTA)
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Consensus Contigs (FASTA)
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Assignment Consensus Contigs (FASTA)
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Discovery Consensus Contigs (FASTA)
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Unused Reads (ZIP)
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Unused Contigs (FASTA)
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BAM Files (ZIP)
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