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Analysis Results

Analysis of ERR138007_norovirus_amplicon_example

Paired-end short reads
ERR138007_1.fastq.gz (19.5 MB), ERR138007_2.fastq.gz (21.23 MB)
Default Virus Analysis (metagenome)
2022-12-05 14:26:58 UTC
panviral2.43

Statistics

130
50 - 115
# Reads % of Reads
Input file 505918 100.0%
After QC
469254 92.8%
After filtering
451640 89.3%
Mapped back to contigs 447981 88.5%

Quality Control (QC) reports

Assignments
Strains with at least 50% NT similarity (assuming a 45% similarity for non-covered parts)

# Reads
Depth of Coverage
NT Identity
AA Identity
446489
6757.5
79.8%
85.0%
1490
19.1
86.8%
82.5%

Discoveries
Strains with low NT identity and/or low genome coverage

# Reads
Depth of Coverage
NT Identity
AA Identity
2
1.7
78.1%
84.4%

Download Assignment and Discovery table:

Download analysis files

unused reads file not available for download
unused contigs file not available for download