Version 2.22.2
Genome Detective Platform

NGS Details (ERR138007_norovirus_amplicon_example): Norovirus GII

Assembly

7464 (1 contig(s))
6757.5
446489
951486.83 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Norovirus GII (Taxonomy ID: 122929)
79.7895
85.002
3
3

Alignment

8941.0 (NT) + 15042.0 (AA) = 23983.0
74.6343
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT13747699.3%894160.1%7452 (99.1%)5989 (79.7%)54/12
Mutations:
19T>G 42C>T 47A>G 86A>G 97T>C 109A>T 130A>G 159T>A 184C>T 187C>T 199C>T 205G>T 208C>T 211T>C 217T>C 229G>A 239C>A 240C>T 253C>T 256C>T 268C>T 286G>C 290A>T 295T>C 304G>A 309G>A 310T>A 314A>T 316C>T 325G>C 334T>C 337C>T 349A>G 361G>A 364C>T 367C>T 373G>A 379A>T 391C>T 412G>A 424C>T 439A>G 454T>A 472G>A 490C>T 492A>G 499A>G 503A>G 514T>C 515C>T 519T>A 520T>C 529A>T 535T>C 538A>T 541A>T 547T>C 559G>A 570G>A 573G>A 575C>T 577G>A 578C>T 579A>C 586G>A 587T>A 592T>C 610T>C 619C>T 628C>T 634T>C 652C>T 662T>C 665T>A 685G>A 739C>T 754G>A 755T>A 757G>A 779T>C 784C>T 787G>T 790A>G 793T>C 799A>G 805T>C 808G>A 814C>A 820C>T 829A>G 833T>A 835G>A 844C>T 853T>C 862G>A 865T>C 889C>T 898A>G 901T>C 902T>C 907T>A 919G>A 964C>T 970T>C 976A>T 991G>A 994G>A 997G>A 1000C>T 1015G>T 1018A>G 1024T>C 1027A>C 1028A>G 1030A>G 1042G>A 1060G>A 1078C>T 1102A>G 1105C>T 1111A>G 1138C>T 1141A>G 1144G>A 1147A>G 1151T>C 1156A>G 1180A>G 1185G>A 1186A>G 1189G>A 1192A>G 1210G>A 1219C>T 1231G>A 1234G>C 1235T>C 1264C>T 1270T>C 1271G>A 1274C>T 1276C>G 1294C>T 1315T>A 1324C>T 1342A>G 1345G>A 1348T>C 1351G>A 1363T>C 1369T>C 1372T>C 1393T>C 1411C>T 1414T>C 1420C>T 1423C>T 1432T>C 1435G>A 1441A>G 1450C>T 1471T>G 1474T>G 1475G>T 1489T>C 1491A>G 1498G>A 1507A>G 1516T>C 1519C>T 1526T>G 1531C>T 1536A>G 1546T>C 1549T>C 1552C>T 1558G>A 1573T>C 1576T>C 1582G>A 1591T>C 1594T>C 1597T>C 1600C>T 1606C>T 1609A>G 1612T>C 1618A>G 1621A>G 1624A>G 1630T>C 1642C>T 1654T>C 1660C>T 1663C>T 1669C>T 1679T>C 1681A>G 1690T>C 1699C>T 1711G>T 1717T>C 1723T>C 1729T>C 1732G>A 1756T>C 1761C>T 1765A>C 1768C>T 1780C>T 1795A>G 1813T>C 1834T>C 1858T>A 1873G>A 1882A>G 1888T>C 1897T>C 1900A>G 1928C>T 1933C>T 1939G>A 1951G>A 1952A>G 1953T>C 1954G>A 1960T>C 1963G>A 1972C>T 1987A>G 1999T>C 2002G>A 2005A>G 2011C>T 2017A>G 2020C>T 2026T>C 2032T>C 2038C>T 2041C>T 2044T>C 2047A>G 2057C>T 2080G>A 2082A>T 2083C>T 2086G>A 2087T>C 2089A>G 2099A>G 2101C>T 2103C>T 2107T>C 2116C>T 2119T>C 2122C>T 2128C>T 2140G>C 2143C>T 2164C>T 2167G>A 2170C>T 2173G>A 2194C>T 2197A>G 2218G>A 2230G>A 2235G>A 2251C>T 2252A>G 2265G>A 2266T>G 2272G>A 2282G>A 2287C>T 2296T>C 2299G>A 2320T>C 2321G>A 2339G>A 2341T>C 2344G>A 2346A>G 2351A>G 2353T>C 2371A>G 2377C>T 2380C>T 2386A>G 2393C>T 2395T>G 2401T>C 2407G>A 2410T>C 2416T>C 2428C>T 2429A>G 2431T>C 2455C>T 2467A>G 2493T>C 2518T>A 2533G>A 2540G>A 2542T>C 2555G>A 2557T>C 2566T>C 2581C>T 2587T>C 2593C>G 2599C>T 2602T>C 2603G>A 2626C>T 2632C>T 2641A>G 2651T>A 2659T>C 2662T>C 2680C>T 2704G>A 2722A>G 2725A>G 2728C>T 2740A>G 2742A>G 2743C>T 2755T>C 2761G>A 2764A>G 2779A>G 2782T>C 2785G>A 2788T>C 2806C>T 2818C>T 2821A>G 2824G>A 2839A>G 2842A>G 2857A>G 2866T>C 2884G>A 2893A>G 2899G>A 2902G>A 2914C>T 2915T>C 2926T>C 2935C>T 2941G>A 2944G>A 2953C>T 2962G>A 2965T>C 2971A>G 2974G>A 2975C>T 2986T>C 2989C>T 3001T>G 3015G>A 3021A>G 3028A>G 3043T>C 3052G>A 3073T>C 3079T>A 3088T>C 3097C>T 3115T>C 3137C>A 3151G>A 3154T>C 3155T>C 3163G>A 3169T>A 3173A>G 3181A>G 3184G>A 3187T>C 3190A>G 3205G>A 3208T>C 3223A>G 3235A>G 3245C>T 3256T>C 3259G>A 3262C>T 3265A>G 3268G>C 3271C>T 3281T>C 3292G>A 3295A>G 3296C>T 3298A>C 3304A>G 3317T>C 3319G>A 3325C>T 3328A>G 3334A>G 3343A>G 3355A>C 3373G>A 3376T>C 3379A>G 3391C>T 3394A>G 3403T>C 3415T>C 3427C>T 3430C>T 3442C>T 3451T>C 3457C>T 3460T>C 3472G>T 3481C>T 3482A>G 3484A>G 3493A>G 3508T>C 3511C>A 3517A>G 3520A>G 3550C>T 3553G>A 3556G>A 3559A>G 3562C>T 3574C>T 3589A>G 3592C>A 3598C>T 3611T>C 3616T>C 3633A>C 3634G>A 3637C>T 3646G>A 3649T>C 3652G>A 3655T>C 3664A>G 3674C>T 3688T>C 3712C>T 3724C>T 3727A>G 3733G>A 3742C>T 3746T>C 3751A>G 3757T>C 3766C>G 3770C>T 3775A>G 3784T>A 3799A>G 3817G>A 3823G>A 3835A>G 3850T>C 3856A>G 3868C>T 3875C>G 3877A>G 3886A>G 3892G>A 3895G>A 3898A>T 3904A>G 3910C>T 3928C>T 3931C>T 3934C>T 3952G>A 3988A>G 3989T>C 4012T>C 4024C>T 4030G>A 4033A>G 4059G>C 4066T>C 4072C>T 4076C>T 4078G>A 4081C>T 4084G>A 4102C>T 4111A>G 4135T>C 4136C>T 4141A>G 4165G>A 4168T>C 4177G>A 4183G>T 4198T>C 4210A>T 4214G>A 4216C>T 4222A>T 4225T>C 4249T>C 4258T>C 4267C>T 4273A>G 4276T>C 4278A>C 4285T>C 4303C>T 4306G>A 4312C>T 4324A>G 4336A>G 4345C>T 4346T>C 4363G>A 4378G>A 4379A>C 4381T>C 4382C>T 4387C>T 4390A>G 4391A>G 4392A>T 4393G>A 4396T>C 4399A>G 4402A>G 4411C>T 4417C>T 4424A>G 4432A>G 4435T>C 4443A>C 4456T>C 4462C>T 4465C>T 4471C>T 4498T>C 4516C>T 4522C>T 4534T>C 4540G>A 4543T>C 4561C>T 4563T>C 4564T>C 4567C>A 4576T>C 4585T>C 4588C>T 4591C>T 4594C>T 4612G>T 4639G>A 4642G>A 4654A>G 4657T>C 4659A>G 4660G>A 4666C>T 4672G>A 4678G>A 4693G>A 4699G>A 4711T>C 4720G>A 4727G>A 4738C>T 4750G>A 4774C>T 4786G>A 4792A>G 4798C>T 4807T>C 4819T>C 4831C>T 4834T>C 4842A>G 4864A>T 4897T>C 4898T>C 4900G>A 4906C>G 4912T>C 4915A>T 4933C>T 4951G>A 4952C>T 4969G>A 4972G>A 5029G>A 5032T>C 5109G>A 5110C>A 5111T>C 5118A>G 5122A>G 5123T>G 5124G>T 5125G>C 5126T>C 5127G>A 5133G>A 5134G>A 5135T>C 5141A>C 5149C>T 5150T>C 5153C>T 5160A>G 5161C>T 5162C>T 5168A>T 5169C>T 5171T>G 5174A>G 5177G>C 5180G>A 5182C>T 5186G>T 5189T>C 5190T>G 5192A>C 5195A>T 5198C>G 5201C>A 5204A>T 5205C>G 5207C>A 5208A>G 5210C>G 5217A>C 5219C>A 5223A>G 5225T>A 5228A>T 5244T>A 5245T>A 5246A>C 5255G>A 5258G>A 5261T>C 5264C>T 5265A>G 5266A>G 5276C>T 5279G>A 5282T>A 5285A>C 5288C>T 5289C>A 5291C>A 5295T>G 5297G>T 5300C>A 5303G>T 5307G>A 5309C>A 5314T>G 5315A>G 5317A>G 5318T>C 5319T>G 5320T>C 5322G>C 5323A>C 5324A>C 5333C>T 5336A>T 5337C>T 5339A>G 5345A>T 5351A>T 5352G>T 5354A>C 5357C>T 5358C>T 5360C>G 5361T>G 5363T>C 5372T>C 5384G>A 5390G>T 5391G>T 5396G>A 5402A>G 5406C>A 5408A>C 5411G>C 5414T>G 5420T>C 5429A>C 5432T>C 5435A>G 5439C>A 5441G>C 5442G>A 5444G>A 5450C>A 5456T>C 5459C>A 5462T>A 5463C>A 5468T>C 5472T>A 5473T>C 5474A>T 5478A>G 5479A>G 5481A>T 5483A>G 5489T>C 5490G>A 5496A>G 5498A>C 5510T>C 5513T>C 5514G>A 5519T>A 5520A>G 5522T>A 5532A>C 5533C>A 5534T>A 5537A>G 5543A>T 5546T>G 5550T>A 5552G>T 5556C>T 5558T>A 5561T>C 5567T>C 5581T>A 5582T>C 5594G>A 5595C>T 5596A>C 5597G>A 5603A>C 5606G>C 5608G>C 5609G>C 5612G>C 5614G>A 5616C>T 5618T>G 5619G>A 5628C>T 5630T>G 5633T>C 5636T>A 5639T>A 5645A>G 5646T>G 5652G>A 5653G>A 5655T>G 5657T>C 5660T>G 5663T>C 5669A>C 5675T>A 5678C>T 5681C>T 5684C>T 5685A>C 5687G>A 5690G>T 5693T>C 5696C>G 5697C>A 5702T>A 5708T>C 5720T>C 5722A>T 5723T>A 5725A>T 5732C>G 5735C>A 5738T>C 5741T>A 5750T>A 5752A>G 5756C>T 5762C>A 5766A>T 5768A>T 5769C>G 5774T>A 5775A>G 5777C>T 5780G>A 5784A>G 5786A>T 5788G>A 5793T>A 5795A>G 5801C>T 5804C>A 5813T>C 5814G>A 5816A>T 5820A>T 5822A>G 5825T>A 5826G>A 5829C>T 5831C>G 5833A>T 5837C>G 5838A>G 5840T>C 5845A>G 5847G>A 5848A>G 5849G>T 5850A>G 5851G>C 5852T>C 5853C>T 5855G>T 5858G>T 5861G>T 5867C>A 5870G>A 5876G>C 5879A>G 5883G>A 5885A>G 5886C>A 5887T>C 5888A>T 5894G>C 5896A>T 5900G>C 5902A>T 5903G>A 5906C>T 5909G>T 5912T>C 5915G>A 5918C>G 5919C>T 5920T>C 5921C>T 5925A>G 5926C>T 5927G>C 5928G>A 5929C>A 5930G>C 5937T>A 5939G>C 5945G>A 5948C>G 5949C>G 5950G>A 5951G>C 5952A>G 5956A>C 5957T>C 5960G>T 5962A>T 5963G>T 5964G>C 5965T>C 5966G>A 5967A>G 5969T>C 5970G>A 5972G>T 5973G>C 5974A>G 5975A>T 5979_5984delCATGTT 5986G>A 5987G>C 5989A>C 5990T>A 5994C>A 5996G>T 5997G>T 5999C>G 6000A>G 6003A>T 6004A>C 6006A>C 6007T>A 6008C>A 6011C>T 6012G>T 6016C>A 6018C>A 6019C>G 6022T>A 6023T>C 6035G>A 6038T>A 6039G>A 6044G>A 6047T>C 6056C>A 6069T>G 6070C>T 6071T>G 6074C>G 6078C>A 6080C>T 6081T>C 6082T>A 6083T>A 6089A>G 6092A>C 6094G>C 6098G>A 6100G>C 6101A>C 6102G>A 6103A>C 6104C>A 6105C>A 6106A>G 6107T>G 6108G>A 6109A>C 6110T>A 6115C>G 6118G>C 6119C>G 6119_6120insACC 6120A>C 6122G>C 6123A>G 6125T>C 6128T>C 6129G>A 6131T>A 6134A>T 6135G>A 6136T>C 6138A>G 6140T>G 6141G>T 6142C>A 6143A>C 6146C>T 6147A>G 6148A>G 6149C>G 6150T>A 6151C>G 6152T>C 6156A>G 6158A>C 6162A>T 6164C>T 6171T>C 6176C>T 6177G>A 6178C>G 6179T>A 6180A>G 6182A>T 6186A>T 6190G>C 6194A>T 6195T>G 6196G>A 6197G>C 6198G>A 6199A>C 6203A>C 6204G>A 6206C>T 6210G>T 6212G>T 6213C>G 6215C>A 6217T>C 6218C>T 6225C>A 6226C>A 6227T>C 6230T>A 6236T>C 6239T>C 6245T>C 6248C>T 6249T>G 6251G>T 6252T>A 6254T>C 6255G>C 6257A>G 6263A>T 6264G>A 6267T>A 6268T>C 6271A>C 6272_6273insCCCCGAAATGAACCCCAA 6275G>A 6279A>G 6280C>T 6281A>G 6287C>A 6289A>G 6293T>C 6296T>A 6299A>C 6300G>A 6301C>G 6302C>A 6303T>A 6304T>A 6305A>C 6307C>T 6308A>T 6310T>A 6315A>G 6318G>C 6319G>A 6320A>C 6321T>C 6329T>C 6330C>G 6335G>A 6344C>T 6350T>G 6353T>C 6356A>G 6359A>G 6360A>C 6362T>C 6365T>C 6371T>C 6377C>T 6378C>A 6379A>C 6380C>T 6383T>G 6386T>C 6387C>G 6388T>G 6389T>A 6390A>T 6391A>G 6392A>C 6393G>A 6395A>C 6398T>G 6399G>T 6400T>A 6401G>C 6402G>C 6404G>C 6405G>A 6408C>A 6409C>T 6410A>G 6412T>A 6413T>C 6414A>T 6416T>G 6419T>C 6425C>G 6426T>C 6428G>C 6431T>C 6434A>G 6441A>G 6443C>G 6447C>T 6450C>T 6452T>C 6458A>G 6462T>G 6464G>A 6470C>A 6471T>G 6479A>T 6485A>G 6488A>T 6492A>C 6494T>A 6497G>A 6501A>G 6502C>T 6503A>G 6509A>G 6518A>T 6519C>A 6521T>G 6525C>T 6527A>G 6533A>G 6534G>T 6535C>G 6536A>T 6539A>G 6540T>C 6542A>T 6545C>T 6547G>A 6548G>A 6549A>T 6550G>C 6551T>A 6554T>C 6557C>T 6558A>G 6560C>T 6569C>T 6570A>C 6572T>C 6578T>C 6579A>C 6580G>A 6581C>A 6582A>C 6583G>A 6584A>T 6585C>G 6586C>A 6587G>T 6588A>T 6590T>G 6593G>T 6594G>A 6596A>C 6599A>C 6600G>C 6602T>C 6611C>T 6614C>T 6617G>A 6623C>T 6626T>C 6632T>C 6635T>C 6638A>G 6644T>C 6645T>A 6647T>A 6664C>A 6668A>G 6670A>C 6671T>G 6677C>T 6681A>C 6683G>T 6685T>C 6686G>A 6687C>T 6688A>T 6689G>A 6706T>C 6707A>T 6709A>T 6712G>T 6715G>A 6716C>T 6718T>G 6721T>A 6722G>T 6723G>C 6728A>G 6730A>C 6731G>C 6733C>T 6734A>G 6735C>G 6737A>T 6738A>C 6742C>A 6743A>C 6748C>T 6751A>C 6754T>A 6755G>A 6757G>C 6760C>T 6770A>G 6771A>G 6772T>G 6775A>C 6778A>C 6790A>T 6793C>A 6802C>T 6807A>G 6808G>A 6809C>A 6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT 6817G>A 6826T>C 6829C>T 6830A>C 6832C>A 6838T>C 6850G>C 6856T>A 6860G>A 6862C>T 6863C>G 6875C>A 6878C>T 6883G>A 6884G>C 6885C>A 6886T>G 6889T>A 6895T>G 6896G>A 6897C>G 6899A>G 6901C>T 6903G>A 6909G>C 6910G>A 6911G>A 6914T>C 6916G>C 6917A>C 6918C>T 6919C>A 6921C>A 6925C>T 6928C>A 6934C>T 6935C>G 6936C>A 6937C>G 6940T>A 6949A>C 6950A>C 6952A>T 6959G>A 6961T>C 6964T>C 6967A>C 6970T>C 6976T>A 6977C>A 6979G>A 6980G>A 6981T>C 6985A>G 6993A>G 6994T>C 7000C>A 7003A>G 7006T>C 7012C>T 7017G>A 7018A>T 7021C>T 7023C>G 7026A>C 7027A>T 7030C>A 7033T>A 7034A>T 7035C>A 7037T>A 7038T>A 7039C>T 7040T>G 7042C>A 7045T>C 7046G>C 7048A>C 7051C>T 7052A>T 7056A>C 7057T>C 7058G>C 7059T>C 7060T>C 7061T>C 7062C>A 7063T>A 7065A>C 7066T>C 7067G>T 7069C>G 7070A>G 7072A>G 7073A>G 7075T>A 7076G>C 7078C>A 7079G>C 7080A>C 7081C>A 7082C>G 7083T>G 7084G>A 7086C>G 7087C>A 7088A>G 7089A>C 7090G>T 7093G>T 7094A>C 7095C>T 7096A>T 7097T>A 7098C>G 7099A>G 7102C>T 7105A>T 7106C>G 7107C>T 7108A>C 7109G>C 7111T>C 7112C>G 7114T>C 7115G>C 7116C>G 7118C>G 7119C>G 7121G>T 7122T>C 7123T>C 7129A>C 7130C>A 7132T>G 7133A>T 7134G>T 7139G>A 7140T>A 7142G>T 7144C>T 7149C>T 7150A>T 7152T>C 7153C>T 7154T>A 7156C>T 7157A>T 7159C>T 7160C>G 7161G>T 7162C>G 7164C>A 7165A>T 7166A>T 7168C>A 7169T>A 7170T>A 7171G>T 7172A>C 7173T>A 7174T>A 7176G>C 7178G>A 7179G>C 7180G>C 7183T>A 7184T>A 7186C>G 7188A>G 7189T>A 7191C>T 7193T>G 7194C>G 7199T>A 7200T>C 7205A>G 7207G>T 7208A>T 7209G>C 7211T>G 7212C>G 7214T>A 7216T>C 7222T>C 7225T>G 7226T>A 7227C>G 7228T>C 7230A>T 7231A>C 7234C>G 7235_7240delACCTCC 7243C>A 7244T>A 7247T>G 7249T>A 7250C>A 7255C>T 7258T>G 7259G>A 7260A>G 7261G>C 7267G>T 7268C>G 7269G>A 7270C>G 7271A>G 7272G>A 7273C>T 7279C>T 7283G>A 7284C>A 7285A>T 7286C>T 7289G>T 7290A>C 7291G>A 7296A>T 7306A>G 7309G>C 7311T>A 7312A>T 7313C>A 7314G>A 7317C>T 7318A>C 7319G>T 7321C>G 7323A>T 7327G>C 7330G>C 7333T>A 7336C>A 7342T>C 7346G>T 7348T>C 7354T>C 7355A>C 7357T>A 7378A>C 7384G>A 7402A>T 7403T>G 7404C>G 7405T>C 7408A>T 7411T>C 7417C>G 7419A>G 7423A>G 7426A>G 7429G>T 7432A>C 7441T>C 7442C>A 7444C>T 7447T>C 7448C>A 7449G>A 7451A>C 7464A>G 7465A>G 7468T>G 7471G>A
CDS
4170099.8%1134196.2%1697 (100%)1622 (95.6%)0/0/0/01
Protein mutations:
A13V (42C>T) N15D (47A>G) M28V (86A>G) I52K (159T>A) K67N (205G>T) P79I (239C>A 240C>T) E94D (286G>C) T96S (290A>T) G102E (309G>A 310T>A) T104S (314A>T 316C>T) K163R (492A>G) T167A (503A>G) F172Y (519T>A 520T>C) R189K (570G>A) R190K (573G>A) H192S (578C>T 579A>C) S195T (587T>A) C221S (665T>A) L251I (755T>A 757G>A) L277I (833T>A 835G>A) I342V (1028A>G 1030A>G) R394K (1185G>A 1186A>G) M402I (1210G>A) A423T (1271G>A) V491L (1475G>T) K496R (1491A>G) L508V (1526T>G) K511R (1536A>G) A586V (1761C>T) D618E (1858T>A) P642S (1928C>T) M650A (1952A>G 1953T>C 1954G>A) Y693F (2082A>T 2083C>T) T699A (2099A>G 2101C>T) P700L (2103C>T) R744K (2235G>A) I750V (2252A>G) S754K (2265G>A 2266T>G) G760S (2282G>A) M765I (2299G>A) D773N (2321G>A) V779I (2339G>A 2341T>C) N781S (2346A>G) T783A (2351A>G 2353T>C) I809V (2429A>G 2431T>C) V830A (2493T>C) D846N (2540G>A 2542T>C) A851T (2555G>A 2557T>C) D863E (2593C>G) V867I (2603G>A) S883T (2651T>A) N913S (2742A>G 2743C>T) R1004K (3015G>A) N1006S (3021A>G) Q1045K (3137C>A) S1051P (3155T>C) I1057V (3173A>G) P1098S (3296C>T 3298A>C) I1160V (3482A>G 3484A>G) K1210T (3633A>C 3634G>A) P1224S (3674C>T) D1254E (3766C>G) Q1291E (3875C>G 3877A>G) G1352A (4059G>C) E1393D (4183G>T) V1404I (4214G>A 4216C>T) K1425T (4278A>C) N1459H (4379A>C 4381T>C) K1463V (4391A>G 4392A>T 4393G>A) M1474V (4424A>G) K1480T (4443A>C) I1520T (4563T>C 4564T>C) K1552R (4659A>G 4660G>A) D1575N (4727G>A) E1613G (4842A>G)
Codon mutations:
TCT5TCG (19T>G) GCT13GTT (42C>T) AAC15GAC (47A>G) ATG28GTG (86A>G) AGT31AGC (97T>C) ACA35ACT (109A>T) GCA42GCG (130A>G) ATA52AAA (159T>A) CCC60CCT (184C>T) ACC61ACT (187C>T) GTC65GTT (199C>T) AAG67AAT (205G>T) ATC68ATT (208C>T) CCT69CCC (211T>C) CCT71CCC (217T>C) GGG75GGA (229G>A) CCA79ATA (239C>A 240C>T) TAC83TAT (253C>T) AGC84AGT (256C>T) GGC88GGT (268C>T) GAG94GAC (286G>C) ACC96TCC (290A>T) ACT97ACC (295T>C) CAG100CAA (304G>A) GGT102GAA (309G>A 310T>A) ACC104TCT (314A>T 316C>T) GCG107GCC (325G>C) GTT110GTC (334T>C) CCC111CCT (337C>T) CAA115CAG (349A>G) AGG119AGA (361G>A) GAC120GAT (364C>T) GCC121GCT (367C>T) GAG123GAA (373G>A) CTA125CTT (379A>T) ATC129ATT (391C>T) GAG136GAA (412G>A) TAC140TAT (424C>T) GAA145GAG (439A>G) CTT150CTA (454T>A) CCG156CCA (472G>A) GCC162GCT (490C>T) AAG163AGG (492A>G) GAA165GAG (499A>G) ACA167GCA (503A>G) TCT170TCC (514T>C) CTG171TTG (515C>T) TTT172TAC (519T>A 520T>C) CCA175CCT (529A>T) TAT177TAC (535T>C) ACA178ACT (538A>T) CCA179CCT (541A>T) TAT181TAC (547T>C) CCG185CCA (559G>A) AGG189AAG (570G>A) AGA190AAA (573G>A) CTG191TTA (575C>T 577G>A) CAC192TCC (578C>T 579A>C) GAG194GAA (586G>A) TCG195ACG (587T>A) TTT196TTC (592T>C) GAT202GAC (610T>C) TGC205TGT (619C>T) TTC208TTT (628C>T) TGT210TGC (634T>C) AAC216AAT (652C>T) TTG220CTG (662T>C) TGC221AGC (665T>A) AGG227AGA (685G>A) ACC245ACT (739C>T) AAG250AAA (754G>A) TTG251ATA (755T>A 757G>A) TTG259CTG (779T>C) TGC260TGT (784C>T) GCG261GCT (787G>T) CTA262CTG (790A>G) TCT263TCC (793T>C) CTA265CTG (799A>G) ACT267ACC (805T>C) AGG268AGA (808G>A) ATC270ATA (814C>A) GAC272GAT (820C>T) GGA275GGG (829A>G) TTG277ATA (833T>A 835G>A) CTC280CTT (844C>T) CTT283CTC (853T>C) TTG286TTA (862G>A) GCT287GCC (865T>C) GGC295GGT (889C>T) GAA298GAG (898A>G) TCT299TCC (901T>C) TTG300CTG (902T>C) ATT301ATA (907T>A) GAG305GAA (919G>A) ATC320ATT (964C>T) CCT322CCC (970T>C) CTA324CTT (976A>T) CTG329CTA (991G>A) CAG330CAA (994G>A) GGG331GGA (997G>A) CCC332CCT (1000C>T) GTG337GTT (1015G>T) GAA338GAG (1018A>G) GTT340GTC (1024T>C) CCA341CCC (1027A>C) ATA342GTG (1028A>G 1030A>G) GGG346GGA (1042G>A) GGG352GGA (1060G>A) ATC358ATT (1078C>T) GCA366GCG (1102A>G) TCC367TCT (1105C>T) TTA369TTG (1111A>G) TAC378TAT (1138C>T) GGA379GGG (1141A>G) CTG380CTA (1144G>A) GAA381GAG (1147A>G) TTA383CTA (1151T>C) AAA384AAG (1156A>G) CCA392CCG (1180A>G) AGA394AAG (1185G>A 1186A>G) GAG395GAA (1189G>A) GAA396GAG (1192A>G) ATG402ATA (1210G>A) TCC405TCT (1219C>T) GCG409GCA (1231G>A) GTG410GTC (1234G>C) TTG411CTG (1235T>C) CAC420CAT (1264C>T) ACT422ACC (1270T>C) GCC423ACC (1271G>A) CTC424TTG (1274C>T 1276C>G) AGC430AGT (1294C>T) ACT437ACA (1315T>A) CTC440CTT (1324C>T) AGA446AGG (1342A>G) AAG447AAA (1345G>A) CTT448CTC (1348T>C) TCG449TCA (1351G>A) GCT453GCC (1363T>C) CCT455CCC (1369T>C) GAT456GAC (1372T>C) GCT463GCC (1393T>C) GCC469GCT (1411C>T) GCT470GCC (1414T>C) CGC472CGT (1420C>T) TCC473TCT (1423C>T) CAT476CAC (1432T>C) CGG477CGA (1435G>A) AAA479AAG (1441A>G) CTC482CTT (1450C>T) GTT489GTG (1471T>G) GTT490GTG (1474T>G) GTG491TTG (1475G>T) GGT495GGC (1489T>C) AAG496AGG (1491A>G) GGG498GGA (1498G>A) AAA501AAG (1507A>G) CTT504CTC (1516T>C) GCC505GCT (1519C>T) TTG508GTG (1526T>G) GCC509GCT (1531C>T) AAA511AGA (1536A>G) GCT514GCC (1546T>C) TCT515TCC (1549T>C) CTC516CTT (1552C>T) GGG518GGA (1558G>A) GGT523GGC (1573T>C) CTT524CTC (1576T>C) CCG526CCA (1582G>A) GGT529GGC (1591T>C) GTT530GTC (1594T>C) GAT531GAC (1597T>C) CAC532CAT (1600C>T) GAC534GAT (1606C>T) GCA535GCG (1609A>G) TAT536TAC (1612T>C) GGA538GGG (1618A>G) GAA539GAG (1621A>G) AGA540AGG (1624A>G) GTT542GTC (1630T>C) GAC546GAT (1642C>T) AGT550AGC (1654T>C) CCC552CCT (1660C>T) ATC553ATT (1663C>T) GAC555GAT (1669C>T) TTA559CTG (1679T>C 1681A>G) CTT562CTC (1690T>C) ACC565ACT (1699C>T) ACG569ACT (1711G>T) AAT571AAC (1717T>C) GAT573GAC (1723T>C) ATT575ATC (1729T>C) GAG576GAA (1732G>A) AGT584AGC (1756T>C) GCC586GTC (1761C>T) ATA587ATC (1765A>C) ATC588ATT (1768C>T) AAC592AAT (1780C>T) GCA597GCG (1795A>G) AAT603AAC (1813T>C) CGT610CGC (1834T>C) GAT618GAA (1858T>A) GAG623GAA (1873G>A) AAA626AAG (1882A>G) GAT628GAC (1888T>C) GGT631GGC (1897T>C) CAA632CAG (1900A>G) CCT642TCT (1928C>T) GAC643GAT (1933C>T) TCG645TCA (1939G>A) CTG649CTA (1951G>A) ATG650GCA (1952A>G 1953T>C 1954G>A) GCT652GCC (1960T>C) CCG653CCA (1963G>A) GGC656GGT (1972C>T) GGA661GGG (1987A>G) CAT665CAC (1999T>C) GGG666GGA (2002G>A) AAA667AAG (2005A>G) GTC669GTT (2011C>T) AAA671AAG (2017A>G) ACC672ACT (2020C>T) ACT674ACC (2026T>C) GGT676GGC (2032T>C) CTC678CTT (2038C>T) ATC679ATT (2041C>T) GCT680GCC (2044T>C) CGA681CGG (2047A>G) CTA685TTA (2057C>T) GAG692GAA (2080G>A) TAC693TTT (2082A>T 2083C>T) GAG694GAA (2086G>A) TTA695CTG (2087T>C 2089A>G) ACC699GCT (2099A>G 2101C>T) CCC700CTC (2103C>T) ACT701ACC (2107T>C) AAC704AAT (2116C>T) TTT705TTC (2119T>C) GAC706GAT (2122C>T) AAC708AAT (2128C>T) GCG712GCC (2140G>C) TTC713TTT (2143C>T) AAC720AAT (2164C>T) AAG721AAA (2167G>A) TAC722TAT (2170C>T) GGG723GGA (2173G>A) GTC730GTT (2194C>T) GGA731GGG (2197A>G) AGG738AGA (2218G>A) GAG742GAA (2230G>A) AGA744AAA (2235G>A) AAC749AAT (2251C>T) ATC750GTC (2252A>G) AGT754AAG (2265G>A 2266T>G) CAG756CAA (2272G>A) GGT760AGT (2282G>A) GGC761GGT (2287C>T) TAT764TAC (2296T>C) ATG765ATA (2299G>A) GGT772GGC (2320T>C) GAT773AAT (2321G>A) GTT779ATC (2339G>A 2341T>C) CAG780CAA (2344G>A) AAC781AGC (2346A>G) ACT783GCC (2351A>G 2353T>C) GAA789GAG (2371A>G) GCC791GCT (2377C>T) GGC792GGT (2380C>T) CTA794CTG (2386A>G) CTT797TTG (2393C>T 2395T>G) TGT799TGC (2401T>C) AGG801AGA (2407G>A) ATT802ATC (2410T>C) TAT804TAC (2416T>C) TGC808TGT (2428C>T) ATT809GTC (2429A>G 2431T>C) ATC817ATT (2455C>T) GGA821GGG (2467A>G) GTC830GCC (2493T>C) CTT838CTA (2518T>A) CAG843CAA (2533G>A) GAT846AAC (2540G>A 2542T>C) GCT851ACC (2555G>A 2557T>C) GAT854GAC (2566T>C) CCC859CCT (2581C>T) GAT861GAC (2587T>C) GAC863GAG (2593C>G) TTC865TTT (2599C>T) GTT866GTC (2602T>C) GTT867ATT (2603G>A) ACC874ACT (2626C>T) GGC876GGT (2632C>T) GGA879GGG (2641A>G) TCT883ACT (2651T>A) CGT885CGC (2659T>C) GGT886GGC (2662T>C) TTC892TTT (2680C>T) GAG900GAA (2704G>A) AAA906AAG (2722A>G) AGA907AGG (2725A>G) ATC908ATT (2728C>T) AGA912AGG (2740A>G) AAC913AGT (2742A>G 2743C>T) TCT917TCC (2755T>C) GAG919GAA (2761G>A) GAA920GAG (2764A>G) AGA925AGG (2779A>G) GAT926GAC (2782T>C) AAG927AAA (2785G>A) TAT928TAC (2788T>C) ATC934ATT (2806C>T) ACC938ACT (2818C>T) GAA939GAG (2821A>G) GAG940GAA (2824G>A) GAA945GAG (2839A>G) GAA946GAG (2842A>G) CGA951CGG (2857A>G) ATT954ATC (2866T>C) AAG960AAA (2884G>A) AAA963AAG (2893A>G) GAG965GAA (2899G>A) AGG966AGA (2902G>A) GGC970GGT (2914C>T) TTG971CTG (2915T>C) GGT974GGC (2926T>C) ATC977ATT (2935C>T) AAG979AAA (2941G>A) AGG980AGA (2944G>A) GAC983GAT (2953C>T) AAG986AAA (2962G>A) CCT987CCC (2965T>C) GGA989GGG (2971A>G) AAG990AAA (2974G>A) CTG991TTG (2975C>T) GAT994GAC (2986T>C) GAC995GAT (2989C>T) GTT999GTG (3001T>G) AGA1004AAA (3015G>A) AAT1006AGT (3021A>G) GAA1008GAG (3028A>G) ATT1013ATC (3043T>C) AGG1016AGA (3052G>A) GGT1023GGC (3073T>C) GGT1025GGA (3079T>A) GTT1028GTC (3088T>C) AGC1031AGT (3097C>T) ACT1037ACC (3115T>C) CAG1045AAG (3137C>A) GGG1049GGA (3151G>A) GTT1050GTC (3154T>C) TCC1051CCC (3155T>C) AAG1053AAA (3163G>A) ATT1055ATA (3169T>A) ATA1057GTA (3173A>G) AAA1059AAG (3181A>G) TCG1060TCA (3184G>A) GGT1061GGC (3187T>C) GAA1062GAG (3190A>G) AGG1067AGA (3205G>A) TTT1068TTC (3208T>C) AGA1073AGG (3223A>G) ACA1077ACG (3235A>G) CTA1081TTA (3245C>T) GGT1084GGC (3256T>C) GCG1085GCA (3259G>A) CCC1086CCT (3262C>T) GAA1087GAG (3265A>G) GGG1088GGC (3268G>C) ACC1089ACT (3271C>T) TTA1093CTA (3281T>C) AAG1096AAA (3292G>A) AGA1097AGG (3295A>G) CCA1098TCC (3296C>T 3298A>C) GGA1100GGG (3304A>G) TTG1105CTA (3317T>C 3319G>A) GCC1107GCT (3325C>T) AGA1108AGG (3328A>G) GGA1110GGG (3334A>G) GCA1113GCG (3343A>G) ATA1117ATC (3355A>C) GGG1123GGA (3373G>A) GGT1124GGC (3376T>C) CAA1125CAG (3379A>G) CTC1129CTT (3391C>T) CTA1130CTG (3394A>G) TCT1133TCC (3403T>C) AGT1137AGC (3415T>C) GGC1141GGT (3427C>T) ACC1142ACT (3430C>T) GAC1146GAT (3442C>T) TGT1149TGC (3451T>C) TAC1151TAT (3457C>T) ATT1152ATC (3460T>C) GGG1156GGT (3472G>T) TAC1159TAT (3481C>T) ATA1160GTG (3482A>G 3484A>G) GGA1163GGG (3493A>G) GCT1168GCC (3508T>C) GCC1169GCA (3511C>A) GGA1171GGG (3517A>G) GGA1172GGG (3520A>G) AGC1182AGT (3550C>T) GAG1183GAA (3553G>A) GGG1184GGA (3556G>A) GAA1185GAG (3559A>G) GCC1186GCT (3562C>T) GGC1190GGT (3574C>T) GGA1195GGG (3589A>G) ACC1196ACA (3592C>A) TGC1198TGT (3598C>T) TTA1203CTA (3611T>C) GGT1204GGC (3616T>C) AAG1210ACA (3633A>C 3634G>A) CTC1211CTT (3637C>T) AAG1214AAA (3646G>A) ACT1215ACC (3649T>C) AAG1216AAA (3652G>A) TTT1217TTC (3655T>C) TCA1220TCG (3664A>G) CCA1224TCA (3674C>T) GGT1228GGC (3688T>C) GGC1236GGT (3712C>T) CCC1240CCT (3724C>T) AGA1241AGG (3727A>G) AAG1243AAA (3733G>A) CCC1246CCT (3742C>T) TTG1248CTG (3746T>C) CAA1249CAG (3751A>G) GTT1251GTC (3757T>C) GAC1254GAG (3766C>G) CTG1256TTG (3770C>T) AAA1257AAG (3775A>G) ACT1260ACA (3784T>A) AAA1265AAG (3799A>G) GTG1271GTA (3817G>A) GAG1273GAA (3823G>A) AAA1277AAG (3835A>G) GTT1282GTC (3850T>C) GAA1284GAG (3856A>G) GAC1288GAT (3868C>T) CAA1291GAG (3875C>G 3877A>G) TCA1294TCG (3886A>G) GCG1296GCA (3892G>A) CAG1297CAA (3895G>A) GCA1298GCT (3898A>T) GCA1300GCG (3904A>G) CTC1302CTT (3910C>T) AGC1308AGT (3928C>T) GGC1309GGT (3931C>T) CAC1310CAT (3934C>T) AAG1316AAA (3952G>A) AAA1328AAG (3988A>G) TTG1329CTG (3989T>C) GCT1336GCC (4012T>C) TTC1340TTT (4024C>T) GAG1342GAA (4030G>A) GGA1343GGG (4033A>G) GGT1352GCT (4059G>C) CTT1354CTC (4066T>C) GAC1356GAT (4072C>T) CTG1358TTA (4076C>T 4078G>A) GTC1359GTT (4081C>T) AAG1360AAA (4084G>A) GGC1366GGT (4102C>T) AAA1369AAG (4111A>G) GAT1377GAC (4135T>C) CTG1378TTG (4136C>T) GCA1379GCG (4141A>G) GCG1387GCA (4165G>A) TTT1388TTC (4168T>C) CTG1391CTA (4177G>A) GAG1393GAT (4183G>T) CAT1398CAC (4198T>C) CTA1402CTT (4210A>T) GTC1404ATT (4214G>A 4216C>T) GTA1406GTT (4222A>T) GGT1407GGC (4225T>C) CCT1415CCC (4249T>C) TTT1418TTC (4258T>C) CAC1421CAT (4267C>T) AGA1423AGG (4273A>G) TAT1424TAC (4276T>C) AAG1425ACG (4278A>C) CAT1427CAC (4285T>C) TCC1433TCT (4303C>T) CGG1434CGA (4306G>A) GAC1436GAT (4312C>T) CAA1440CAG (4324A>G) TTA1444TTG (4336A>G) GCC1447GCT (4345C>T) TTA1448CTA (4346T>C) AAG1453AAA (4363G>A) CCG1458CCA (4378G>A) AAT1459CAC (4379A>C 4381T>C) CTG1460TTG (4382C>T) GCC1461GCT (4387C>T) CAA1462CAG (4390A>G) AAG1463GTA (4391A>G 4392A>T 4393G>A) GTT1464GTC (4396T>C) GCA1465GCG (4399A>G) GAA1466GAG (4402A>G) CTC1469CTT (4411C>T) CCC1471CCT (4417C>T) ATG1474GTG (4424A>G) GTA1476GTG (4432A>G) GGT1477GGC (4435T>C) AAA1480ACA (4443A>C) AAT1484AAC (4456T>C) GGC1486GGT (4462C>T) CTC1487CTT (4465C>T) TCC1489TCT (4471C>T) AAT1498AAC (4498T>C) CTC1504CTT (4516C>T) ACC1506ACT (4522C>T) CTT1510CTC (4534T>C) GAG1512GAA (4540G>A) GTT1513GTC (4543T>C) GAC1519GAT (4561C>T) ATT1520ACC (4563T>C 4564T>C) ATC1521ATA (4567C>A) AAT1524AAC (4576T>C) TTT1527TTC (4585T>C) TCC1528TCT (4588C>T) TTC1529TTT (4591C>T) TAC1530TAT (4594C>T) GTG1536GTT (4612G>T) GAG1545GAA (4639G>A) AAG1546AAA (4642G>A) AAA1550AAG (4654A>G) CTT1551CTC (4657T>C) AAG1552AGA (4659A>G 4660G>A) TAC1554TAT (4666C>T) TTG1556TTA (4672G>A) CCG1558CCA (4678G>A) AAG1563AAA (4693G>A) GAG1565GAA (4699G>A) GTT1569GTC (4711T>C) GAG1572GAA (4720G>A) GAT1575AAT (4727G>A) ACC1578ACT (4738C>T) AGG1582AGA (4750G>A) GGC1590GGT (4774C>T) AAG1594AAA (4786G>A) GAA1596GAG (4792A>G) AGC1598AGT (4798C>T) CTT1601CTC (4807T>C) TAT1605TAC (4819T>C) GGC1609GGT (4831C>T) CCT1610CCC (4834T>C) GAA1613GGA (4842A>G) ATA1620ATT (4864A>T) TCT1631TCC (4897T>C) TTG1632CTA (4898T>C 4900G>A) GGC1634GGG (4906C>G) GCT1636GCC (4912T>C) GCA1637GCT (4915A>T) TTC1643TTT (4933C>T) AAG1649AAA (4951G>A) CTG1650TTG (4952C>T) CTG1655CTA (4969G>A) AAG1656AAA (4972G>A) AGG1675AGA (5029G>A) TTT1676TTC (5032T>C)
1536100%271871.2%534 (98.3%)357 (65.7%)7/2/0/01
Protein mutations:
A9N (5109G>A 5110C>A 5111T>C) N12D (5118A>G) D13G (5122A>G 5123T>G) G14S (5124G>T 5125G>C 5126T>C) A15T (5127G>A) G17N (5133G>A 5134G>A 5135T>C) A22V (5149C>T 5150T>C) T26V (5160A>G 5161C>T 5162C>T) A33V (5182C>T) S36A (5190T>G 5192A>C) L41V (5205C>G 5207C>A) T42A (5208A>G 5210C>G) N45Q (5217A>C 5219C>A) I47V (5223A>G 5225T>A) L54N (5244T>A 5245T>A 5246A>C) N61G (5265A>G 5266A>G) S71A (5295T>G 5297G>T) V75I (5307G>A 5309C>A) L77W (5314T>G 5315A>G) N78S (5317A>G 5318T>C) L79A (5319T>G 5320T>C) E80P (5322G>C 5323A>C 5324A>C) E84D (5336A>T) A90S (5352G>T 5354A>C) S93A (5361T>G 5363T>C) V103F (5391G>T) L108I (5406C>A 5408A>C) L119I (5439C>A 5441G>C) V120I (5442G>A 5444G>A) H127N (5463C>A) L130T (5472T>A 5473T>C 5474A>T) N132G (5478A>G 5479A>G) I133L (5481A>T 5483A>G) G136S (5490G>A) I138V (5496A>G 5498A>C) V144I (5514G>A) I146V (5520A>G 5522T>A) T150Q (5532A>C 5533C>A 5534T>A) L156I (5550T>A 5552G>T) F166Y (5581T>A 5582T>C) Q171S (5595C>T 5596A>C 5597G>A) E173D (5603A>C) R175T (5608G>C 5609G>C) M176I (5612G>C) R177K (5614G>A) V179I (5619G>A) S188A (5646T>G) G190N (5652G>A 5653G>A) S191A (5655T>G 5657T>C) N213I (5722A>T 5723T>A) Y214F (5725A>T) K223R (5752A>G) T228S (5766A>T 5768A>T) L229V (5769C>G) I231V (5775A>G 5777C>T) I234V (5784A>G 5786A>T) G235E (5788G>A) L237M (5793T>A 5795A>G) V244I (5814G>A 5816A>T) I246L (5820A>T 5822A>G) D247E (5825T>A) E248K (5826G>A) Y250F (5833A>T) S252G (5838A>G 5840T>C) N254S (5845A>G) E255S (5847G>A 5848A>G 5849G>T) S256A (5850A>G 5851G>C 5852T>C) L257F (5853C>T 5855G>T) A267T (5883G>A 5885A>G) L268T (5886C>A 5887T>C 5888A>T) E271V (5896A>T) Q273L (5902A>T 5903G>A) L279S (5919C>T 5920T>C 5921C>T) T281V (5925A>G 5926C>T 5927G>C) A282N (5928G>A 5929C>A 5930G>C) S285T (5937T>A 5939G>C) R289D (5949C>G 5950G>A 5951G>C) I290V (5952A>G) N291T (5956A>C 5957T>C) Q292H (5960G>T) K293I (5962A>T 5963G>T) V294P (5964G>C 5965T>C 5966G>A) S295G (5967A>G 5969T>C) G296S (5970G>A 5972G>T) E297R (5973G>C 5974A>G 5975A>T) H299_V300del (5979_5984delCATGTT) W301Y (5986G>A 5987G>C) N302T (5989A>C 5990T>A) Q304N (5994C>A 5996G>T) V305L (5997G>T 5999C>G) T306A (6000A>G) N307S (6003A>T 6004A>C) I308Q (6006A>C 6007T>A 6008C>A) G310W (6012G>T) T311N (6016C>A) P312S (6018C>A 6019C>G) F313Y (6022T>A 6023T>C) D318E (6038T>A) V319I (6039G>A) S329V (6069T>G 6070C>T 6071T>G) L332I (6078C>A 6080C>T) F333Q (6081T>C 6082T>A 6083T>A) S337T (6094G>C) R339T (6100G>C 6101A>C) D340T (6102G>A 6103A>C 6104C>A) H341R (6105C>A 6106A>G 6107T>G) D342T (6108G>A 6109A>C 6110T>A) A344G (6115C>G) C345S (6118G>C 6119C>G) C345_R346insT (6119_6120insACC) S347G (6123A>G 6125T>C) D349K (6129G>A 6131T>A) V351T (6135G>A 6136T>C) I352V (6138A>G 6140T>G) A353Y (6141G>T 6142C>A 6143A>C) N355G (6147A>G 6148A>G 6149C>G) K358D (6156A>G 6158A>C) T360S (6162A>T 6164C>T) A365R (6177G>A 6178C>G 6179T>A) I366V (6180A>G 6182A>T) I368F (6186A>T) G369A (6190G>C) W371D (6195T>G 6196G>A 6197G>C) E372T (6198G>A 6199A>C) E373D (6203A>C) D374N (6204G>A 6206C>T) V376F (6210G>T 6212G>T) H377E (6213C>G 6215C>A) I378T (6217T>C 6218C>T) P381N (6225C>A 6226C>A 6227T>C) L389V (6249T>G 6251G>T) F390I (6252T>A 6254T>C) E391Q (6255G>C 6257A>G) G394S (6264G>A) F395T (6267T>A 6268T>C) N396T (6271A>C) N396_Q397insPRNEPQ (6272_6273insCCCCGAAATGAACCCCAA) T399V (6279A>G 6280C>T 6281A>G) N402S (6289A>G) A406R (6300G>A 6301C>G 6302C>A) L407N (6303T>A 6304T>A 6305A>C) T408I (6307C>T 6308A>T) L409H (6310T>A) M411V (6315A>G) G412H (6318G>C 6319G>A 6320A>C) P416A (6330C>G) I426L (6360A>C 6362T>C) H432T (6378C>A 6379A>C 6380C>T) I433M (6383T>G) L435G (6387C>G 6388T>G 6389T>A) K436C (6390A>T 6391A>G 6392A>C) G437S (6393G>A 6395A>C) V439Y (6399G>T 6400T>A 6401G>C) A440P (6402G>C 6404G>C) D441N (6405G>A) P442M (6408C>A 6409C>T 6410A>G) V443D (6412T>A 6413T>C) I444L (6414A>T 6416T>G) I453V (6441A>G 6443C>G) H455Y (6447C>T) L456F (6450C>T 6452T>C) S460A (6462T>G 6464G>A) S463A (6471T>G) I470L (6492A>C 6494T>A) T473V (6501A>G 6502C>T 6503A>G) A484C (6534G>T 6535C>G 6536A>T) R488K (6547G>A 6548G>A) I492V (6558A>G 6560C>T) N496H (6570A>C 6572T>C) S499Q (6579A>C 6580G>A 6581C>A) R500H (6582A>C 6583G>A 6584A>T) P501D (6585C>G 6586C>A 6587G>T) I502L (6588A>T 6590T>G) V504I (6594G>A 6596A>C) A506P (6600G>C 6602T>C) S521T (6645T>A 6647T>A) T527N (6664C>A) N529T (6670A>C 6671T>G) V534A (6685T>C 6686G>A) Q535L (6687C>T 6688A>T 6689G>A)
Codon mutations:
GCT9AAC (5109G>A 5110C>A 5111T>C) AAT12GAT (5118A>G) GAT13GGG (5122A>G 5123T>G) GGT14TCC (5124G>T 5125G>C 5126T>C) GCA15ACA (5127G>A) GGT17AAC (5133G>A 5134G>A 5135T>C) GTA19GTC (5141A>C) GCT22GTC (5149C>T 5150T>C) AAC23AAT (5153C>T) ACC26GTT (5160A>G 5161C>T 5162C>T) GCA28GCT (5168A>T) CTT29TTG (5169C>T 5171T>G) GAA30GAG (5174A>G) CCG31CCC (5177G>C) GTG32GTA (5180G>A) GCT33GTT (5182C>T) GGG34GGT (5186G>T) GCT35GCC (5189T>C) TCA36GCC (5190T>G 5192A>C) ATA37ATT (5195A>T) GCC38GCG (5198C>G) GCC39GCA (5201C>A) CCA40CCT (5204A>T) CTC41GTA (5205C>G 5207C>A) ACC42GCG (5208A>G 5210C>G) AAC45CAA (5217A>C 5219C>A) ATT47GTA (5223A>G 5225T>A) ATA48ATT (5228A>T) TTA54AAC (5244T>A 5245T>A 5246A>C) GTG57GTA (5255G>A) CAG58CAA (5258G>A) GCT59GCC (5261T>C) CCC60CCT (5264C>T) AAT61GGT (5265A>G 5266A>G) TTC64TTT (5276C>T) ACG65ACA (5279G>A) GTT66GTA (5282T>A) TCA67TCC (5285A>C) CCC68CCT (5288C>T) CGC69AGA (5289C>A 5291C>A) TCG71GCT (5295T>G 5297G>T) CCC72CCA (5300C>A) GGG73GGT (5303G>T) GTC75ATA (5307G>A 5309C>A) TTA77TGG (5314T>G 5315A>G) AAT78AGC (5317A>G 5318T>C) TTG79GCG (5319T>G 5320T>C) GAA80CCC (5322G>C 5323A>C 5324A>C) CCC83CCT (5333C>T) GAA84GAT (5336A>T) CTA85TTG (5337C>T 5339A>G) CCA87CCT (5345A>T) CTA89CTT (5351A>T) GCA90TCC (5352G>T 5354A>C) CAC91CAT (5357C>T) CTC92TTG (5358C>T 5360C>G) TCT93GCC (5361T>G 5363T>C) TAT96TAC (5372T>C) GCG100GCA (5384G>A) GGG102GGT (5390G>T) GTT103TTT (5391G>T) GAG104GAA (5396G>A) CAA106CAG (5402A>G) CTA108ATC (5406C>A 5408A>C) CTG109CTC (5411G>C) GCT110GCG (5414T>G) AAT112AAC (5420T>C) ACA115ACC (5429A>C) GCT116GCC (5432T>C) GGA117GGG (5435A>G) CTG119ATC (5439C>A 5441G>C) GTG120ATA (5442G>A 5444G>A) GCC122GCA (5450C>A) GTT124GTC (5456T>C) CCC125CCA (5459C>A) CCT126CCA (5462T>A) CAT127AAT (5463C>A) TTT128TTC (5468T>C) TTA130ACT (5472T>A 5473T>C 5474A>T) AAT132GGT (5478A>G 5479A>G) ATA133TTG (5481A>T 5483A>G) CCT135CCC (5489T>C) GGC136AGC (5490G>A) ATA138GTC (5496A>G 5498A>C) CCT142CCC (5510T>C) CAT143CAC (5513T>C) GTA144ATA (5514G>A) ATT145ATA (5519T>A) ATT146GTA (5520A>G 5522T>A) ACT150CAA (5532A>C 5533C>A 5534T>A) TTA151TTG (5537A>G) CCA153CCT (5543A>T) GTT154GTG (5546T>G) TTG156ATT (5550T>A 5552G>T) CTT158TTA (5556C>T 5558T>A) CCT159CCC (5561T>C) GTT161GTC (5567T>C) TTT166TAC (5581T>A 5582T>C) CAG170CAA (5594G>A) CAG171TCA (5595C>T 5596A>C 5597G>A) GAA173GAC (5603A>C) CCG174CCC (5606G>C) AGG175ACC (5608G>C 5609G>C) ATG176ATC (5612G>C) AGA177AAA (5614G>A) CTT178TTG (5616C>T 5618T>G) GTA179ATA (5619G>A) CTT182TTG (5628C>T 5630T>G) TAT183TAC (5633T>C) ACT184ACA (5636T>A) CCT185CCA (5639T>A) AGA187AGG (5645A>G) TCT188GCT (5646T>G) GGT190AAT (5652G>A 5653G>A) TCT191GCC (5655T>G 5657T>C) GGT192GGG (5660T>G) GAT193GAC (5663T>C) GTA195GTC (5669A>C) ACT197ACA (5675T>A) GTC198GTT (5678C>T) TCC199TCT (5681C>T) TGC200TGT (5684C>T) AGG201CGA (5685A>C 5687G>A) GTG202GTT (5690G>T) CTT203CTC (5693T>C) ACC204ACG (5696C>G) CGA205AGA (5697C>A) CCT206CCA (5702T>A) CCT208CCC (5708T>C) TTT212TTC (5720T>C) AAT213ATA (5722A>T 5723T>A) TAT214TTT (5725A>T) GTC216GTG (5732C>G) CCC217CCA (5735C>A) CCT218CCC (5738T>C) ACT219ACA (5741T>A) TCT222TCA (5750T>A) AAA223AGA (5752A>G) ACC224ACT (5756C>T) CCC226CCA (5762C>A) ACA228TCT (5766A>T 5768A>T) CTC229GTC (5769C>G) CCT230CCA (5774T>A) ATC231GTT (5775A>G 5777C>T) TTG232TTA (5780G>A) ATA234GTT (5784A>G 5786A>T) GGG235GAG (5788G>A) TTA237ATG (5793T>A 5795A>G) AAC239AAT (5801C>T) TCC240TCA (5804C>A) CCT243CCC (5813T>C) GTA244ATT (5814G>A 5816A>T) ATA246TTG (5820A>T 5822A>G) GAT247GAA (5825T>A) GAG248AAG (5826G>A) CTC249TTG (5829C>T 5831C>G) TAC250TTC (5833A>T) ACC251ACG (5837C>G) AGT252GGC (5838A>G 5840T>C) AAT254AGT (5845A>G) GAG255AGT (5847G>A 5848A>G 5849G>T) AGT256GCC (5850A>G 5851G>C 5852T>C) CTG257TTT (5853C>T 5855G>T) GTG258GTT (5858G>T) GTG259GTT (5861G>T) CCC261CCA (5867C>A) CAG262CAA (5870G>A) GGG264GGC (5876G>C) AGA265AGG (5879A>G) GCA267ACG (5883G>A 5885A>G) CTA268ACT (5886C>A 5887T>C 5888A>T) GGG270GGC (5894G>C) GAG271GTG (5896A>T) CTG272CTC (5900G>C) CAG273CTA (5902A>T 5903G>A) GGC274GGT (5906C>T) ACG275ACT (5909G>T) ACT276ACC (5912T>C) CAG277CAA (5915G>A) CTC278CTG (5918C>G) CTC279TCT (5919C>T 5920T>C 5921C>T) ACG281GTC (5925A>G 5926C>T 5927G>C) GCG282AAC (5928G>A 5929C>A 5930G>C) TCG285ACC (5937T>A 5939G>C) AGG287AGA (5945G>A) GGC288GGG (5948C>G) CGG289GAC (5949C>G 5950G>A 5951G>C) ATC290GTC (5952A>G) AAT291ACC (5956A>C 5957T>C) CAG292CAT (5960G>T) AAG293ATT (5962A>T 5963G>T) GTG294CCA (5964G>C 5965T>C 5966G>A) AGT295GGC (5967A>G 5969T>C) GGG296AGT (5970G>A 5972G>T) GAA297CGT (5973G>C 5974A>G 5975A>T) CAT299_GTT300del (5979_5984delCATGTT) TGG301TAC (5986G>A 5987G>C) AAT302ACA (5989A>C 5990T>A) CAG304AAT (5994C>A 5996G>T) GTC305TTG (5997G>T 5999C>G) ACC306GCC (6000A>G) AAC307TCC (6003A>T 6004A>C) ATC308CAA (6006A>C 6007T>A 6008C>A) AAC309AAT (6011C>T) GGG310TGG (6012G>T) ACC311AAC (6016C>A) CCT312AGT (6018C>A 6019C>G) TTT313TAC (6022T>A 6023T>C) GAG317GAA (6035G>A) GAT318GAA (6038T>A) GTC319ATC (6039G>A) CCG320CCA (6044G>A) GCT321GCC (6047T>C) GGC324GGA (6056C>A) TCT329GTG (6069T>G 6070C>T 6071T>G) GGC330GGG (6074C>G) CTC332ATT (6078C>A 6080C>T) TTT333CAA (6081T>C 6082T>A 6083T>A) GTA335GTG (6089A>G) CTA336CTC (6092A>C) AGC337ACC (6094G>C) CAG338CAA (6098G>A) AGA339ACC (6100G>C 6101A>C) GAC340ACA (6102G>A 6103A>C 6104C>A) CAT341AGG (6105C>A 6106A>G 6107T>G) GAT342ACA (6108G>A 6109A>C 6110T>A) GCC344GGC (6115C>G) TGC345TCG (6118G>C 6119C>G) TGC345_AGG346insACC (6119_6120insACC) AGG346CGC (6120A>C 6122G>C) AGT347GGC (6123A>G 6125T>C) CAT348CAC (6128T>C) GAT349AAA (6129G>A 6131T>A) GCA350GCT (6134A>T) GTA351ACA (6135G>A 6136T>C) ATT352GTG (6138A>G 6140T>G) GCA353TAC (6141G>T 6142C>A 6143A>C) ACC354ACT (6146C>T) AAC355GGG (6147A>G 6148A>G 6149C>G) TCT356AGC (6150T>A 6151C>G 6152T>C) AAA358GAC (6156A>G 6158A>C) ACC360TCT (6162A>T 6164C>T) TTG363CTG (6171T>C) GGC364GGT (6176C>T) GCT365AGA (6177G>A 6178C>G 6179T>A) ATA366GTT (6180A>G 6182A>T) ATT368TTT (6186A>T) GGC369GCC (6190G>C) ACA370ACT (6194A>T) TGG371GAC (6195T>G 6196G>A 6197G>C) GAA372ACA (6198G>A 6199A>C) GAA373GAC (6203A>C) GAC374AAT (6204G>A 6206C>T) GTG376TTT (6210G>T 6212G>T) CAC377GAA (6213C>G 6215C>A) ATC378ACT (6217T>C 6218C>T) CCT381AAC (6225C>A 6226C>A 6227T>C) ACT382ACA (6230T>A) TTT384TTC (6236T>C) ACT385ACC (6239T>C) GTT387GTC (6245T>C) GGC388GGT (6248C>T) TTG389GTT (6249T>G 6251G>T) TTT390ATC (6252T>A 6254T>C) GAA391CAG (6255G>C 6257A>G) GGA393GGT (6263A>T) GGT394AGT (6264G>A) TTC395ACC (6267T>A 6268T>C) AAC396ACC (6271A>C) AAC396_CAG397insCCCCGAAATGAACCCCAA (6272_6273insCCCCGAAATGAACCCCAA) CAG397CAA (6275G>A) ACA399GTG (6279A>G 6280C>T 6281A>G) CCC401CCA (6287C>A) AAT402AGT (6289A>G) TAT403TAC (6293T>C) TCT404TCA (6296T>A) GGA405GGC (6299A>C) GCC406AGA (6300G>A 6301C>G 6302C>A) TTA407AAC (6303T>A 6304T>A 6305A>C) ACA408ATT (6307C>T 6308A>T) CTT409CAT (6310T>A) ATG411GTG (6315A>G) GGA412CAC (6318G>C 6319G>A 6320A>C) TTG413CTG (6321T>C) CCT415CCC (6329T>C) CCT416GCT (6330C>G) GTG417GTA (6335G>A) ACC420ACT (6344C>T) CCT422CCG (6350T>G) GGT423GGC (6353T>C) GAA424GAG (6356A>G) CAA425CAG (6359A>G) ATT426CTC (6360A>C 6362T>C) CTT427CTC (6365T>C) TTT429TTC (6371T>C) TCC431TCT (6377C>T) CAC432ACT (6378C>A 6379A>C 6380C>T) ATT433ATG (6383T>G) CCT434CCC (6386T>C) CTT435GGA (6387C>G 6388T>G 6389T>A) AAA436TGC (6390A>T 6391A>G 6392A>C) GGA437AGC (6393G>A 6395A>C) GGT438GGG (6398T>G) GTG439TAC (6399G>T 6400T>A 6401G>C) GCG440CCC (6402G>C 6404G>C) GAC441AAC (6405G>A) CCA442ATG (6408C>A 6409C>T 6410A>G) GTT443GAC (6412T>A 6413T>C) ATT444TTG (6414A>T 6416T>G) GAT445GAC (6419T>C) CTC447CTG (6425C>G) TTG448CTC (6426T>C 6428G>C) CCT449CCC (6431T>C) CAA450CAG (6434A>G) ATC453GTG (6441A>G 6443C>G) CAT455TAT (6447C>T) CTT456TTC (6450C>T 6452T>C) CAA458CAG (6458A>G) TCG460GCA (6462T>G 6464G>A) CCC462CCA (6470C>A) TCA463GCA (6471T>G) TCA465TCT (6479A>T) GTA467GTG (6485A>G) GCA468GCT (6488A>T) ATT470CTA (6492A>C 6494T>A) AGG471AGA (6497G>A) ACA473GTG (6501A>G 6502C>T 6503A>G) CCA475CCG (6509A>G) GGA478GGT (6518A>T) CGT479AGG (6519C>A 6521T>G) CTA481TTG (6525C>T 6527A>G) GAA483GAG (6533A>G) GCA484TGT (6534G>T 6535C>G 6536A>T) AAA485AAG (6539A>G) TTA486CTT (6540T>C 6542A>T) CAC487CAT (6545C>T) AGG488AAA (6547G>A 6548G>A) AGT489TCA (6549A>T 6550G>C 6551T>A) GGT490GGC (6554T>C) TAC491TAT (6557C>T) ATC492GTT (6558A>G 6560C>T) GCC495GCT (6569C>T) AAT496CAC (6570A>C 6572T>C) GGT498GGC (6578T>C) AGC499CAA (6579A>C 6580G>A 6581C>A) AGA500CAT (6582A>C 6583G>A 6584A>T) CCG501GAT (6585C>G 6586C>A 6587G>T) ATT502TTG (6588A>T 6590T>G) GTG503GTT (6593G>T) GTA504ATC (6594G>A 6596A>C) CCA505CCC (6599A>C) GCT506CCC (6600G>C 6602T>C) TAC509TAT (6611C>T) TTC510TTT (6614C>T) AGG511AGA (6617G>A) GAC513GAT (6623C>T) TCT514TCC (6626T>C) GTT516GTC (6632T>C) AAT517AAC (6635T>C) CAA518CAG (6638A>G) TAT520TAC (6644T>C) TCT521ACA (6645T>A 6647T>A) ACT527AAT (6664C>A) GGA528GGG (6668A>G) AAT529ACG (6670A>C 6671T>G) CGC531CGT (6677C>T) AGG533CGT (6681A>C 6683G>T) GTG534GCA (6685T>C 6686G>A) CAG535TTA (6687C>T 6688A>T 6689G>A)
1260100%98359.1%258 (95.2%)152 (56.1%)11/2/0/01
Protein mutations:
I6F (6707A>T 6709A>T) G11S (6722G>T 6723G>C) I13V (6728A>G 6730A>C) V14L (6731G>C 6733C>T) T15G (6734A>G 6735C>G) N16S (6737A>T 6738A>C) I18L (6743A>C) V22I (6755G>A 6757G>C) N27G (6770A>G 6771A>G 6772T>G) D34E (6793C>A) K39R (6807A>G 6808G>A) Q40K (6809C>A) Q40_L41insLQQASFQFSSN (6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT) N47Q (6830A>C 6832C>A) V57I (6860G>A 6862C>T) Q58E (6863C>G) Q62K (6875C>A) A65Q (6884G>C 6885C>A 6886T>G) D66E (6889T>A) I68M (6895T>G) A69R (6896G>A 6897C>G) I70V (6899A>G 6901C>T) R71K (6903G>A) G73A (6909G>C 6910G>A) V74M (6911G>A) T76L (6917A>C 6918C>T 6919C>A) A77E (6921C>A) P82E (6935C>G 6936C>A 6937C>G) V90I (6959G>A 6961T>C) Q96K (6977C>A 6979G>A) V97T (6980G>A 6981T>C) N101S (6993A>G 6994T>C) G109D (7017G>A 7018A>T) T111R (7023C>G) K112T (7026A>C 7027A>T) T115Y (7034A>T 7035C>A) F116N (7037T>A 7038T>A 7039C>T) S117A (7040T>G 7042C>A) G119R (7046G>C 7048A>C) T121S (7052A>T) N122T (7056A>C 7057T>C) V123P (7058G>C 7059T>C 7060T>C) S124Q (7061T>C 7062C>A 7063T>A) H125P (7065A>C 7066T>C) A126S (7067G>T 7069C>G) R127G (7070A>G 7072A>G) T128A (7073A>G 7075T>A) V129L (7076G>C 7078C>A) D130P (7079G>C 7080A>C 7081C>A) L131G (7082C>G 7083T>G 7084G>A) T132R (7086C>G 7087C>A) K133A (7088A>G 7089A>C 7090G>T) K134N (7093G>T) T135L (7094A>C 7095C>T 7096A>T) S136R (7097T>A 7098C>G 7099A>G) P139V (7106C>G 7107C>T 7108A>C) A140P (7109G>C 7111T>C) P141A (7112C>G 7114T>C) A142R (7115G>C 7116C>G) P143G (7118C>G 7119C>G) V144S (7121G>T 7122T>C 7123T>C) R146S (7129A>C) P147T (7130C>A 7132T>G) S148F (7133A>T 7134G>T) V150N (7139G>A 7140T>A) A151S (7142G>T 7144C>T) T153I (7149C>T 7150A>T) V154A (7152T>C 7153C>T) S155T (7154T>A 7156C>T) T156S (7157A>T 7159C>T) R157V (7160C>G 7161G>T 7162C>G) S158Y (7164C>A 7165A>T) T159S (7166A>T 7168C>A) L160N (7169T>A 7170T>A 7171G>T) I161Q (7172A>C 7173T>A 7174T>A) S162T (7176G>C) G163T (7178G>A 7179G>C 7180G>C) S165T (7184T>A 7186C>G) N166R (7188A>G 7189T>A) P167L (7191C>T) S168G (7193T>G 7194C>G) L170T (7199T>A 7200T>C) R172G (7205A>G 7207G>T) S174G (7211T>G 7212C>G) S175T (7214T>A 7216T>C) Q180L (7230A>T 7231A>C) T182_S183del (7235_7240delACCTCC) S185T (7244T>A) S186A (7247T>G 7249T>A) S189R (7258T>G) E190S (7259G>A 7260A>G 7261G>C) R193E (7268C>G 7269G>A 7270C>G) S194D (7271A>G 7272G>A 7273C>T) A198N (7283G>A 7284C>A 7285A>T) E200S (7289G>T 7290A>C 7291G>A) Y202F (7296A>T) L207H (7311T>A 7312A>T) R208N (7313C>A 7314G>A) T209I (7317C>T 7318A>C) A210S (7319G>T 7321C>G) Y211F (7323A>T) A219S (7346G>T 7348T>C) N222Q (7355A>C 7357T>A) S238G (7403T>G 7404C>G 7405T>C) H243R (7419A>G) L251I (7442C>A 7444C>T) R253K (7448C>A 7449G>A) Q258R (7464A>G 7465A>G)
Codon mutations:
TTT5TTC (6706T>C) ATA6TTT (6707A>T 6709A>T) GCG7GCT (6712G>T) GGG8GGA (6715G>A) CTT9TTG (6716C>T 6718T>G) GCT10GCA (6721T>A) GGT11TCT (6722G>T 6723G>C) ATA13GTC (6728A>G 6730A>C) GTC14CTT (6731G>C 6733C>T) ACC15GGC (6734A>G 6735C>G) AAT16TCT (6737A>T 6738A>C) GGC17GGA (6742C>A) ATT18CTT (6743A>C) GGC19GGT (6748C>T) TCA20TCC (6751A>C) CTT21CTA (6754T>A) GTG22ATC (6755G>A 6757G>C) AAC23AAT (6760C>T) AAT27GGG (6770A>G 6771A>G 6772T>G) GCA28GCC (6775A>C) ATA29ATC (6778A>C) GTA33GTT (6790A>T) GAC34GAA (6793C>A) AAC37AAT (6802C>T) AAG39AGA (6807A>G 6808G>A) CAA40AAA (6809C>A) CAA40_CTA41insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT (6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT) CAG42CAA (6817G>A) TCT45TCC (6826T>C) TTC46TTT (6829C>T) AAC47CAA (6830A>C 6832C>A) GAT49GAC (6838T>C) CTG53CTC (6850G>C) GCT55GCA (6856T>A) GTC57ATT (6860G>A 6862C>T) CAG58GAG (6863C>G) CAG62AAG (6875C>A) CTG63TTG (6878C>T) CAG64CAA (6883G>A) GCT65CAG (6884G>C 6885C>A 6886T>G) GAT66GAA (6889T>A) ATT68ATG (6895T>G) GCA69AGA (6896G>A 6897C>G) ATC70GTT (6899A>G 6901C>T) AGA71AAA (6903G>A) GGG73GCA (6909G>C 6910G>A) GTG74ATG (6911G>A) TTG75CTC (6914T>C 6916G>C) ACC76CTA (6917A>C 6918C>T 6919C>A) GCG77GAG (6921C>A) GGC78GGT (6925C>T) GGC79GGA (6928C>A) TCC81TCT (6934C>T) CCC82GAG (6935C>G 6936C>A 6937C>G) ACT83ACA (6940T>A) GCA86GCC (6949A>C) AGA87CGT (6950A>C 6952A>T) GTT90ATC (6959G>A 6961T>C) AAT91AAC (6964T>C) GCA92GCC (6967A>C) CCT93CCC (6970T>C) ACT95ACA (6976T>A) CAG96AAA (6977C>A 6979G>A) GTT97ACT (6980G>A 6981T>C) TTA98TTG (6985A>G) AAT101AGC (6993A>G 6994T>C) ACC103ACA (7000C>A) AGA104AGG (7003A>G) TAT105TAC (7006T>C) GCC107GCT (7012C>T) GGA109GAT (7017G>A 7018A>T) GCC110GCT (7021C>T) ACG111AGG (7023C>G) AAA112ACT (7026A>C 7027A>T) ACC113ACA (7030C>A) ACT114ACA (7033T>A) ACT115TAT (7034A>T 7035C>A) TTC116AAT (7037T>A 7038T>A 7039C>T) TCC117GCA (7040T>G 7042C>A) GGT118GGC (7045T>C) GGA119CGC (7046G>C 7048A>C) TTC120TTT (7051C>T) ACC121TCC (7052A>T) AAT122ACC (7056A>C 7057T>C) GTT123CCC (7058G>C 7059T>C 7060T>C) TCT124CAA (7061T>C 7062C>A 7063T>A) CAT125CCC (7065A>C 7066T>C) GCC126TCG (7067G>T 7069C>G) AGA127GGG (7070A>G 7072A>G) ACT128GCA (7073A>G 7075T>A) GTC129CTA (7076G>C 7078C>A) GAC130CCA (7079G>C 7080A>C 7081C>A) CTG131GGA (7082C>G 7083T>G 7084G>A) ACC132AGA (7086C>G 7087C>A) AAG133GCT (7088A>G 7089A>C 7090G>T) AAG134AAT (7093G>T) ACA135CTT (7094A>C 7095C>T 7096A>T) TCA136AGG (7097T>A 7098C>G 7099A>G) GCC137GCT (7102C>T) ACA138ACT (7105A>T) CCA139GTC (7106C>G 7107C>T 7108A>C) GCT140CCC (7109G>C 7111T>C) CCT141GCC (7112C>G 7114T>C) GCG142CGG (7115G>C 7116C>G) CCT143GGT (7118C>G 7119C>G) GTT144TCC (7121G>T 7122T>C 7123T>C) AGA146AGC (7129A>C) CCT147ACG (7130C>A 7132T>G) AGC148TTC (7133A>T 7134G>T) GTC150AAC (7139G>A 7140T>A) GCC151TCT (7142G>T 7144C>T) ACA153ATT (7149C>T 7150A>T) GTC154GCT (7152T>C 7153C>T) TCC155ACT (7154T>A 7156C>T) ACC156TCT (7157A>T 7159C>T) CGC157GTG (7160C>G 7161G>T 7162C>G) TCA158TAT (7164C>A 7165A>T) ACC159TCA (7166A>T 7168C>A) TTG160AAT (7169T>A 7170T>A 7171G>T) ATT161CAA (7172A>C 7173T>A 7174T>A) AGC162ACC (7176G>C) GGG163ACC (7178G>A 7179G>C 7180G>C) TCT164TCA (7183T>A) TCC165ACG (7184T>A 7186C>G) AAT166AGA (7188A>G 7189T>A) CCT167CTT (7191C>T) TCT168GGT (7193T>G 7194C>G) TTA170ACA (7199T>A 7200T>C) AGG172GGT (7205A>G 7207G>T) AGT173TCT (7208A>T 7209G>C) TCT174GGT (7211T>G 7212C>G) TCT175ACC (7214T>A 7216T>C) GTT177GTC (7222T>C) TCT178TCG (7225T>G) TCT179AGC (7226T>A 7227C>G 7228T>C) CAA180CTC (7230A>T 7231A>C) CCC181CCG (7234C>G) ACC182_TCC183del (7235_7240delACCTCC) TCC184TCA (7243C>A) TCT185ACT (7244T>A) TCT186GCA (7247T>G 7249T>A) CGG187AGG (7250C>A) ACC188ACT (7255C>T) AGT189AGG (7258T>G) GAG190AGC (7259G>A 7260A>G 7261G>C) GTG192GTT (7267G>T) CGC193GAG (7268C>G 7269G>A 7270C>G) AGC194GAT (7271A>G 7272G>A 7273C>T) AAC196AAT (7279C>T) GCA198AAT (7283G>A 7284C>A 7285A>T) CTG199TTG (7286C>T) GAG200TCA (7289G>T 7290A>C 7291G>A) TAC202TTC (7296A>T) GGA205GGG (7306A>G) GCG206GCC (7309G>C) CTA207CAT (7311T>A 7312A>T) CGC208AAC (7313C>A 7314G>A) ACA209ATC (7317C>T 7318A>C) GCC210TCG (7319G>T 7321C>G) TAT211TTT (7323A>T) GTG212GTC (7327G>C) ACG213ACC (7330G>C) CCT214CCA (7333T>A) CCC215CCA (7336C>A) AGT217AGC (7342T>C) GCT219TCC (7346G>T 7348T>C) AGT221AGC (7354T>C) AAT222CAA (7355A>C 7357T>A) CCA229CCC (7378A>C) GAG231GAA (7384G>A) ACA237ACT (7402A>T) TCT238GGC (7403T>G 7404C>G 7405T>C) GCA239GCT (7408A>T) TTT240TTC (7411T>C) ACC242ACG (7417C>G) CAC243CGC (7419A>G) AGA244AGG (7423A>G) CAA245CAG (7426A>G) CCG246CCT (7429G>T) CTA247CTC (7432A>C) CAT250CAC (7441T>C) CTC251ATT (7442C>A 7444C>T) CGT252CGC (7447T>C) CGG253AAG (7448C>A 7449G>A) AGA254CGA (7451A>C) CAA258CGG (7464A>G 7465A>G) GTT259GTG (7468T>G) TAG260TAA (7471G>A)
Proteins
4170099.8%1134196.2%1697 (100%)1622 (95.6%)0/0/0/01
Protein mutations:
A13V (42C>T) N15D (47A>G) M28V (86A>G) I52K (159T>A) K67N (205G>T) P79I (239C>A 240C>T) E94D (286G>C) T96S (290A>T) G102E (309G>A 310T>A) T104S (314A>T 316C>T) K163R (492A>G) T167A (503A>G) F172Y (519T>A 520T>C) R189K (570G>A) R190K (573G>A) H192S (578C>T 579A>C) S195T (587T>A) C221S (665T>A) L251I (755T>A 757G>A) L277I (833T>A 835G>A) I342V (1028A>G 1030A>G) R394K (1185G>A 1186A>G) M402I (1210G>A) A423T (1271G>A) V491L (1475G>T) K496R (1491A>G) L508V (1526T>G) K511R (1536A>G) A586V (1761C>T) D618E (1858T>A) P642S (1928C>T) M650A (1952A>G 1953T>C 1954G>A) Y693F (2082A>T 2083C>T) T699A (2099A>G 2101C>T) P700L (2103C>T) R744K (2235G>A) I750V (2252A>G) S754K (2265G>A 2266T>G) G760S (2282G>A) M765I (2299G>A) D773N (2321G>A) V779I (2339G>A 2341T>C) N781S (2346A>G) T783A (2351A>G 2353T>C) I809V (2429A>G 2431T>C) V830A (2493T>C) D846N (2540G>A 2542T>C) A851T (2555G>A 2557T>C) D863E (2593C>G) V867I (2603G>A) S883T (2651T>A) N913S (2742A>G 2743C>T) R1004K (3015G>A) N1006S (3021A>G) Q1045K (3137C>A) S1051P (3155T>C) I1057V (3173A>G) P1098S (3296C>T 3298A>C) I1160V (3482A>G 3484A>G) K1210T (3633A>C 3634G>A) P1224S (3674C>T) D1254E (3766C>G) Q1291E (3875C>G 3877A>G) G1352A (4059G>C) E1393D (4183G>T) V1404I (4214G>A 4216C>T) K1425T (4278A>C) N1459H (4379A>C 4381T>C) K1463V (4391A>G 4392A>T 4393G>A) M1474V (4424A>G) K1480T (4443A>C) I1520T (4563T>C 4564T>C) K1552R (4659A>G 4660G>A) D1575N (4727G>A) E1613G (4842A>G)
Codon mutations:
TCT5TCG (19T>G) GCT13GTT (42C>T) AAC15GAC (47A>G) ATG28GTG (86A>G) AGT31AGC (97T>C) ACA35ACT (109A>T) GCA42GCG (130A>G) ATA52AAA (159T>A) CCC60CCT (184C>T) ACC61ACT (187C>T) GTC65GTT (199C>T) AAG67AAT (205G>T) ATC68ATT (208C>T) CCT69CCC (211T>C) CCT71CCC (217T>C) GGG75GGA (229G>A) CCA79ATA (239C>A 240C>T) TAC83TAT (253C>T) AGC84AGT (256C>T) GGC88GGT (268C>T) GAG94GAC (286G>C) ACC96TCC (290A>T) ACT97ACC (295T>C) CAG100CAA (304G>A) GGT102GAA (309G>A 310T>A) ACC104TCT (314A>T 316C>T) GCG107GCC (325G>C) GTT110GTC (334T>C) CCC111CCT (337C>T) CAA115CAG (349A>G) AGG119AGA (361G>A) GAC120GAT (364C>T) GCC121GCT (367C>T) GAG123GAA (373G>A) CTA125CTT (379A>T) ATC129ATT (391C>T) GAG136GAA (412G>A) TAC140TAT (424C>T) GAA145GAG (439A>G) CTT150CTA (454T>A) CCG156CCA (472G>A) GCC162GCT (490C>T) AAG163AGG (492A>G) GAA165GAG (499A>G) ACA167GCA (503A>G) TCT170TCC (514T>C) CTG171TTG (515C>T) TTT172TAC (519T>A 520T>C) CCA175CCT (529A>T) TAT177TAC (535T>C) ACA178ACT (538A>T) CCA179CCT (541A>T) TAT181TAC (547T>C) CCG185CCA (559G>A) AGG189AAG (570G>A) AGA190AAA (573G>A) CTG191TTA (575C>T 577G>A) CAC192TCC (578C>T 579A>C) GAG194GAA (586G>A) TCG195ACG (587T>A) TTT196TTC (592T>C) GAT202GAC (610T>C) TGC205TGT (619C>T) TTC208TTT (628C>T) TGT210TGC (634T>C) AAC216AAT (652C>T) TTG220CTG (662T>C) TGC221AGC (665T>A) AGG227AGA (685G>A) ACC245ACT (739C>T) AAG250AAA (754G>A) TTG251ATA (755T>A 757G>A) TTG259CTG (779T>C) TGC260TGT (784C>T) GCG261GCT (787G>T) CTA262CTG (790A>G) TCT263TCC (793T>C) CTA265CTG (799A>G) ACT267ACC (805T>C) AGG268AGA (808G>A) ATC270ATA (814C>A) GAC272GAT (820C>T) GGA275GGG (829A>G) TTG277ATA (833T>A 835G>A) CTC280CTT (844C>T) CTT283CTC (853T>C) TTG286TTA (862G>A) GCT287GCC (865T>C) GGC295GGT (889C>T) GAA298GAG (898A>G) TCT299TCC (901T>C) TTG300CTG (902T>C) ATT301ATA (907T>A) GAG305GAA (919G>A) ATC320ATT (964C>T) CCT322CCC (970T>C) CTA324CTT (976A>T) CTG329CTA (991G>A) CAG330CAA (994G>A) GGG331GGA (997G>A) CCC332CCT (1000C>T) GTG337GTT (1015G>T) GAA338GAG (1018A>G) GTT340GTC (1024T>C) CCA341CCC (1027A>C) ATA342GTG (1028A>G 1030A>G) GGG346GGA (1042G>A) GGG352GGA (1060G>A) ATC358ATT (1078C>T) GCA366GCG (1102A>G) TCC367TCT (1105C>T) TTA369TTG (1111A>G) TAC378TAT (1138C>T) GGA379GGG (1141A>G) CTG380CTA (1144G>A) GAA381GAG (1147A>G) TTA383CTA (1151T>C) AAA384AAG (1156A>G) CCA392CCG (1180A>G) AGA394AAG (1185G>A 1186A>G) GAG395GAA (1189G>A) GAA396GAG (1192A>G) ATG402ATA (1210G>A) TCC405TCT (1219C>T) GCG409GCA (1231G>A) GTG410GTC (1234G>C) TTG411CTG (1235T>C) CAC420CAT (1264C>T) ACT422ACC (1270T>C) GCC423ACC (1271G>A) CTC424TTG (1274C>T 1276C>G) AGC430AGT (1294C>T) ACT437ACA (1315T>A) CTC440CTT (1324C>T) AGA446AGG (1342A>G) AAG447AAA (1345G>A) CTT448CTC (1348T>C) TCG449TCA (1351G>A) GCT453GCC (1363T>C) CCT455CCC (1369T>C) GAT456GAC (1372T>C) GCT463GCC (1393T>C) GCC469GCT (1411C>T) GCT470GCC (1414T>C) CGC472CGT (1420C>T) TCC473TCT (1423C>T) CAT476CAC (1432T>C) CGG477CGA (1435G>A) AAA479AAG (1441A>G) CTC482CTT (1450C>T) GTT489GTG (1471T>G) GTT490GTG (1474T>G) GTG491TTG (1475G>T) GGT495GGC (1489T>C) AAG496AGG (1491A>G) GGG498GGA (1498G>A) AAA501AAG (1507A>G) CTT504CTC (1516T>C) GCC505GCT (1519C>T) TTG508GTG (1526T>G) GCC509GCT (1531C>T) AAA511AGA (1536A>G) GCT514GCC (1546T>C) TCT515TCC (1549T>C) CTC516CTT (1552C>T) GGG518GGA (1558G>A) GGT523GGC (1573T>C) CTT524CTC (1576T>C) CCG526CCA (1582G>A) GGT529GGC (1591T>C) GTT530GTC (1594T>C) GAT531GAC (1597T>C) CAC532CAT (1600C>T) GAC534GAT (1606C>T) GCA535GCG (1609A>G) TAT536TAC (1612T>C) GGA538GGG (1618A>G) GAA539GAG (1621A>G) AGA540AGG (1624A>G) GTT542GTC (1630T>C) GAC546GAT (1642C>T) AGT550AGC (1654T>C) CCC552CCT (1660C>T) ATC553ATT (1663C>T) GAC555GAT (1669C>T) TTA559CTG (1679T>C 1681A>G) CTT562CTC (1690T>C) ACC565ACT (1699C>T) ACG569ACT (1711G>T) AAT571AAC (1717T>C) GAT573GAC (1723T>C) ATT575ATC (1729T>C) GAG576GAA (1732G>A) AGT584AGC (1756T>C) GCC586GTC (1761C>T) ATA587ATC (1765A>C) ATC588ATT (1768C>T) AAC592AAT (1780C>T) GCA597GCG (1795A>G) AAT603AAC (1813T>C) CGT610CGC (1834T>C) GAT618GAA (1858T>A) GAG623GAA (1873G>A) AAA626AAG (1882A>G) GAT628GAC (1888T>C) GGT631GGC (1897T>C) CAA632CAG (1900A>G) CCT642TCT (1928C>T) GAC643GAT (1933C>T) TCG645TCA (1939G>A) CTG649CTA (1951G>A) ATG650GCA (1952A>G 1953T>C 1954G>A) GCT652GCC (1960T>C) CCG653CCA (1963G>A) GGC656GGT (1972C>T) GGA661GGG (1987A>G) CAT665CAC (1999T>C) GGG666GGA (2002G>A) AAA667AAG (2005A>G) GTC669GTT (2011C>T) AAA671AAG (2017A>G) ACC672ACT (2020C>T) ACT674ACC (2026T>C) GGT676GGC (2032T>C) CTC678CTT (2038C>T) ATC679ATT (2041C>T) GCT680GCC (2044T>C) CGA681CGG (2047A>G) CTA685TTA (2057C>T) GAG692GAA (2080G>A) TAC693TTT (2082A>T 2083C>T) GAG694GAA (2086G>A) TTA695CTG (2087T>C 2089A>G) ACC699GCT (2099A>G 2101C>T) CCC700CTC (2103C>T) ACT701ACC (2107T>C) AAC704AAT (2116C>T) TTT705TTC (2119T>C) GAC706GAT (2122C>T) AAC708AAT (2128C>T) GCG712GCC (2140G>C) TTC713TTT (2143C>T) AAC720AAT (2164C>T) AAG721AAA (2167G>A) TAC722TAT (2170C>T) GGG723GGA (2173G>A) GTC730GTT (2194C>T) GGA731GGG (2197A>G) AGG738AGA (2218G>A) GAG742GAA (2230G>A) AGA744AAA (2235G>A) AAC749AAT (2251C>T) ATC750GTC (2252A>G) AGT754AAG (2265G>A 2266T>G) CAG756CAA (2272G>A) GGT760AGT (2282G>A) GGC761GGT (2287C>T) TAT764TAC (2296T>C) ATG765ATA (2299G>A) GGT772GGC (2320T>C) GAT773AAT (2321G>A) GTT779ATC (2339G>A 2341T>C) CAG780CAA (2344G>A) AAC781AGC (2346A>G) ACT783GCC (2351A>G 2353T>C) GAA789GAG (2371A>G) GCC791GCT (2377C>T) GGC792GGT (2380C>T) CTA794CTG (2386A>G) CTT797TTG (2393C>T 2395T>G) TGT799TGC (2401T>C) AGG801AGA (2407G>A) ATT802ATC (2410T>C) TAT804TAC (2416T>C) TGC808TGT (2428C>T) ATT809GTC (2429A>G 2431T>C) ATC817ATT (2455C>T) GGA821GGG (2467A>G) GTC830GCC (2493T>C) CTT838CTA (2518T>A) CAG843CAA (2533G>A) GAT846AAC (2540G>A 2542T>C) GCT851ACC (2555G>A 2557T>C) GAT854GAC (2566T>C) CCC859CCT (2581C>T) GAT861GAC (2587T>C) GAC863GAG (2593C>G) TTC865TTT (2599C>T) GTT866GTC (2602T>C) GTT867ATT (2603G>A) ACC874ACT (2626C>T) GGC876GGT (2632C>T) GGA879GGG (2641A>G) TCT883ACT (2651T>A) CGT885CGC (2659T>C) GGT886GGC (2662T>C) TTC892TTT (2680C>T) GAG900GAA (2704G>A) AAA906AAG (2722A>G) AGA907AGG (2725A>G) ATC908ATT (2728C>T) AGA912AGG (2740A>G) AAC913AGT (2742A>G 2743C>T) TCT917TCC (2755T>C) GAG919GAA (2761G>A) GAA920GAG (2764A>G) AGA925AGG (2779A>G) GAT926GAC (2782T>C) AAG927AAA (2785G>A) TAT928TAC (2788T>C) ATC934ATT (2806C>T) ACC938ACT (2818C>T) GAA939GAG (2821A>G) GAG940GAA (2824G>A) GAA945GAG (2839A>G) GAA946GAG (2842A>G) CGA951CGG (2857A>G) ATT954ATC (2866T>C) AAG960AAA (2884G>A) AAA963AAG (2893A>G) GAG965GAA (2899G>A) AGG966AGA (2902G>A) GGC970GGT (2914C>T) TTG971CTG (2915T>C) GGT974GGC (2926T>C) ATC977ATT (2935C>T) AAG979AAA (2941G>A) AGG980AGA (2944G>A) GAC983GAT (2953C>T) AAG986AAA (2962G>A) CCT987CCC (2965T>C) GGA989GGG (2971A>G) AAG990AAA (2974G>A) CTG991TTG (2975C>T) GAT994GAC (2986T>C) GAC995GAT (2989C>T) GTT999GTG (3001T>G) AGA1004AAA (3015G>A) AAT1006AGT (3021A>G) GAA1008GAG (3028A>G) ATT1013ATC (3043T>C) AGG1016AGA (3052G>A) GGT1023GGC (3073T>C) GGT1025GGA (3079T>A) GTT1028GTC (3088T>C) AGC1031AGT (3097C>T) ACT1037ACC (3115T>C) CAG1045AAG (3137C>A) GGG1049GGA (3151G>A) GTT1050GTC (3154T>C) TCC1051CCC (3155T>C) AAG1053AAA (3163G>A) ATT1055ATA (3169T>A) ATA1057GTA (3173A>G) AAA1059AAG (3181A>G) TCG1060TCA (3184G>A) GGT1061GGC (3187T>C) GAA1062GAG (3190A>G) AGG1067AGA (3205G>A) TTT1068TTC (3208T>C) AGA1073AGG (3223A>G) ACA1077ACG (3235A>G) CTA1081TTA (3245C>T) GGT1084GGC (3256T>C) GCG1085GCA (3259G>A) CCC1086CCT (3262C>T) GAA1087GAG (3265A>G) GGG1088GGC (3268G>C) ACC1089ACT (3271C>T) TTA1093CTA (3281T>C) AAG1096AAA (3292G>A) AGA1097AGG (3295A>G) CCA1098TCC (3296C>T 3298A>C) GGA1100GGG (3304A>G) TTG1105CTA (3317T>C 3319G>A) GCC1107GCT (3325C>T) AGA1108AGG (3328A>G) GGA1110GGG (3334A>G) GCA1113GCG (3343A>G) ATA1117ATC (3355A>C) GGG1123GGA (3373G>A) GGT1124GGC (3376T>C) CAA1125CAG (3379A>G) CTC1129CTT (3391C>T) CTA1130CTG (3394A>G) TCT1133TCC (3403T>C) AGT1137AGC (3415T>C) GGC1141GGT (3427C>T) ACC1142ACT (3430C>T) GAC1146GAT (3442C>T) TGT1149TGC (3451T>C) TAC1151TAT (3457C>T) ATT1152ATC (3460T>C) GGG1156GGT (3472G>T) TAC1159TAT (3481C>T) ATA1160GTG (3482A>G 3484A>G) GGA1163GGG (3493A>G) GCT1168GCC (3508T>C) GCC1169GCA (3511C>A) GGA1171GGG (3517A>G) GGA1172GGG (3520A>G) AGC1182AGT (3550C>T) GAG1183GAA (3553G>A) GGG1184GGA (3556G>A) GAA1185GAG (3559A>G) GCC1186GCT (3562C>T) GGC1190GGT (3574C>T) GGA1195GGG (3589A>G) ACC1196ACA (3592C>A) TGC1198TGT (3598C>T) TTA1203CTA (3611T>C) GGT1204GGC (3616T>C) AAG1210ACA (3633A>C 3634G>A) CTC1211CTT (3637C>T) AAG1214AAA (3646G>A) ACT1215ACC (3649T>C) AAG1216AAA (3652G>A) TTT1217TTC (3655T>C) TCA1220TCG (3664A>G) CCA1224TCA (3674C>T) GGT1228GGC (3688T>C) GGC1236GGT (3712C>T) CCC1240CCT (3724C>T) AGA1241AGG (3727A>G) AAG1243AAA (3733G>A) CCC1246CCT (3742C>T) TTG1248CTG (3746T>C) CAA1249CAG (3751A>G) GTT1251GTC (3757T>C) GAC1254GAG (3766C>G) CTG1256TTG (3770C>T) AAA1257AAG (3775A>G) ACT1260ACA (3784T>A) AAA1265AAG (3799A>G) GTG1271GTA (3817G>A) GAG1273GAA (3823G>A) AAA1277AAG (3835A>G) GTT1282GTC (3850T>C) GAA1284GAG (3856A>G) GAC1288GAT (3868C>T) CAA1291GAG (3875C>G 3877A>G) TCA1294TCG (3886A>G) GCG1296GCA (3892G>A) CAG1297CAA (3895G>A) GCA1298GCT (3898A>T) GCA1300GCG (3904A>G) CTC1302CTT (3910C>T) AGC1308AGT (3928C>T) GGC1309GGT (3931C>T) CAC1310CAT (3934C>T) AAG1316AAA (3952G>A) AAA1328AAG (3988A>G) TTG1329CTG (3989T>C) GCT1336GCC (4012T>C) TTC1340TTT (4024C>T) GAG1342GAA (4030G>A) GGA1343GGG (4033A>G) GGT1352GCT (4059G>C) CTT1354CTC (4066T>C) GAC1356GAT (4072C>T) CTG1358TTA (4076C>T 4078G>A) GTC1359GTT (4081C>T) AAG1360AAA (4084G>A) GGC1366GGT (4102C>T) AAA1369AAG (4111A>G) GAT1377GAC (4135T>C) CTG1378TTG (4136C>T) GCA1379GCG (4141A>G) GCG1387GCA (4165G>A) TTT1388TTC (4168T>C) CTG1391CTA (4177G>A) GAG1393GAT (4183G>T) CAT1398CAC (4198T>C) CTA1402CTT (4210A>T) GTC1404ATT (4214G>A 4216C>T) GTA1406GTT (4222A>T) GGT1407GGC (4225T>C) CCT1415CCC (4249T>C) TTT1418TTC (4258T>C) CAC1421CAT (4267C>T) AGA1423AGG (4273A>G) TAT1424TAC (4276T>C) AAG1425ACG (4278A>C) CAT1427CAC (4285T>C) TCC1433TCT (4303C>T) CGG1434CGA (4306G>A) GAC1436GAT (4312C>T) CAA1440CAG (4324A>G) TTA1444TTG (4336A>G) GCC1447GCT (4345C>T) TTA1448CTA (4346T>C) AAG1453AAA (4363G>A) CCG1458CCA (4378G>A) AAT1459CAC (4379A>C 4381T>C) CTG1460TTG (4382C>T) GCC1461GCT (4387C>T) CAA1462CAG (4390A>G) AAG1463GTA (4391A>G 4392A>T 4393G>A) GTT1464GTC (4396T>C) GCA1465GCG (4399A>G) GAA1466GAG (4402A>G) CTC1469CTT (4411C>T) CCC1471CCT (4417C>T) ATG1474GTG (4424A>G) GTA1476GTG (4432A>G) GGT1477GGC (4435T>C) AAA1480ACA (4443A>C) AAT1484AAC (4456T>C) GGC1486GGT (4462C>T) CTC1487CTT (4465C>T) TCC1489TCT (4471C>T) AAT1498AAC (4498T>C) CTC1504CTT (4516C>T) ACC1506ACT (4522C>T) CTT1510CTC (4534T>C) GAG1512GAA (4540G>A) GTT1513GTC (4543T>C) GAC1519GAT (4561C>T) ATT1520ACC (4563T>C 4564T>C) ATC1521ATA (4567C>A) AAT1524AAC (4576T>C) TTT1527TTC (4585T>C) TCC1528TCT (4588C>T) TTC1529TTT (4591C>T) TAC1530TAT (4594C>T) GTG1536GTT (4612G>T) GAG1545GAA (4639G>A) AAG1546AAA (4642G>A) AAA1550AAG (4654A>G) CTT1551CTC (4657T>C) AAG1552AGA (4659A>G 4660G>A) TAC1554TAT (4666C>T) TTG1556TTA (4672G>A) CCG1558CCA (4678G>A) AAG1563AAA (4693G>A) GAG1565GAA (4699G>A) GTT1569GTC (4711T>C) GAG1572GAA (4720G>A) GAT1575AAT (4727G>A) ACC1578ACT (4738C>T) AGG1582AGA (4750G>A) GGC1590GGT (4774C>T) AAG1594AAA (4786G>A) GAA1596GAG (4792A>G) AGC1598AGT (4798C>T) CTT1601CTC (4807T>C) TAT1605TAC (4819T>C) GGC1609GGT (4831C>T) CCT1610CCC (4834T>C) GAA1613GGA (4842A>G) ATA1620ATT (4864A>T) TCT1631TCC (4897T>C) TTG1632CTA (4898T>C 4900G>A) GGC1634GGG (4906C>G) GCT1636GCC (4912T>C) GCA1637GCT (4915A>T) TTC1643TTT (4933C>T) AAG1649AAA (4951G>A) CTG1650TTG (4952C>T) CTG1655CTA (4969G>A) AAG1656AAA (4972G>A) AGG1675AGA (5029G>A) TTT1676TTC (5032T>C)
433099.1%221694.2%327 (100%)307 (93.9%)0/0/0/00
Protein mutations:
A13V (42C>T) N15D (47A>G) M28V (86A>G) I52K (159T>A) K67N (205G>T) P79I (239C>A 240C>T) E94D (286G>C) T96S (290A>T) G102E (309G>A 310T>A) T104S (314A>T 316C>T) K163R (492A>G) T167A (503A>G) F172Y (519T>A 520T>C) R189K (570G>A) R190K (573G>A) H192S (578C>T 579A>C) S195T (587T>A) C221S (665T>A) L251I (755T>A 757G>A) L277I (833T>A 835G>A)
Codon mutations:
TCT5TCG (19T>G) GCT13GTT (42C>T) AAC15GAC (47A>G) ATG28GTG (86A>G) AGT31AGC (97T>C) ACA35ACT (109A>T) GCA42GCG (130A>G) ATA52AAA (159T>A) CCC60CCT (184C>T) ACC61ACT (187C>T) GTC65GTT (199C>T) AAG67AAT (205G>T) ATC68ATT (208C>T) CCT69CCC (211T>C) CCT71CCC (217T>C) GGG75GGA (229G>A) CCA79ATA (239C>A 240C>T) TAC83TAT (253C>T) AGC84AGT (256C>T) GGC88GGT (268C>T) GAG94GAC (286G>C) ACC96TCC (290A>T) ACT97ACC (295T>C) CAG100CAA (304G>A) GGT102GAA (309G>A 310T>A) ACC104TCT (314A>T 316C>T) GCG107GCC (325G>C) GTT110GTC (334T>C) CCC111CCT (337C>T) CAA115CAG (349A>G) AGG119AGA (361G>A) GAC120GAT (364C>T) GCC121GCT (367C>T) GAG123GAA (373G>A) CTA125CTT (379A>T) ATC129ATT (391C>T) GAG136GAA (412G>A) TAC140TAT (424C>T) GAA145GAG (439A>G) CTT150CTA (454T>A) CCG156CCA (472G>A) GCC162GCT (490C>T) AAG163AGG (492A>G) GAA165GAG (499A>G) ACA167GCA (503A>G) TCT170TCC (514T>C) CTG171TTG (515C>T) TTT172TAC (519T>A 520T>C) CCA175CCT (529A>T) TAT177TAC (535T>C) ACA178ACT (538A>T) CCA179CCT (541A>T) TAT181TAC (547T>C) CCG185CCA (559G>A) AGG189AAG (570G>A) AGA190AAA (573G>A) CTG191TTA (575C>T 577G>A) CAC192TCC (578C>T 579A>C) GAG194GAA (586G>A) TCG195ACG (587T>A) TTT196TTC (592T>C) GAT202GAC (610T>C) TGC205TGT (619C>T) TTC208TTT (628C>T) TGT210TGC (634T>C) AAC216AAT (652C>T) TTG220CTG (662T>C) TGC221AGC (665T>A) AGG227AGA (685G>A) ACC245ACT (739C>T) AAG250AAA (754G>A) TTG251ATA (755T>A 757G>A) TTG259CTG (779T>C) TGC260TGT (784C>T) GCG261GCT (787G>T) CTA262CTG (790A>G) TCT263TCC (793T>C) CTA265CTG (799A>G) ACT267ACC (805T>C) AGG268AGA (808G>A) ATC270ATA (814C>A) GAC272GAT (820C>T) GGA275GGG (829A>G) TTG277ATA (833T>A 835G>A) CTC280CTT (844C>T) CTT283CTC (853T>C) TTG286TTA (862G>A) GCT287GCC (865T>C) GGC295GGT (889C>T) GAA298GAG (898A>G) TCT299TCC (901T>C) TTG300CTG (902T>C) ATT301ATA (907T>A) GAG305GAA (919G>A) ATC320ATT (964C>T) CCT322CCC (970T>C) CTA324CTT (976A>T) CTG329CTA (991G>A) CAG330CAA (994G>A)
1366100%236397.4%366 (100%)353 (96.4%)0/0/0/00
Protein mutations:
I12V (1028A>G 1030A>G) R64K (1185G>A 1186A>G) M72I (1210G>A) A93T (1271G>A) V161L (1475G>T) K166R (1491A>G) L178V (1526T>G) K181R (1536A>G) A256V (1761C>T) D288E (1858T>A) P312S (1928C>T) M320A (1952A>G 1953T>C 1954G>A) Y363F (2082A>T 2083C>T)
Codon mutations:
GGG1GGA (997G>A) CCC2CCT (1000C>T) GTG7GTT (1015G>T) GAA8GAG (1018A>G) GTT10GTC (1024T>C) CCA11CCC (1027A>C) ATA12GTG (1028A>G 1030A>G) GGG16GGA (1042G>A) GGG22GGA (1060G>A) ATC28ATT (1078C>T) GCA36GCG (1102A>G) TCC37TCT (1105C>T) TTA39TTG (1111A>G) TAC48TAT (1138C>T) GGA49GGG (1141A>G) CTG50CTA (1144G>A) GAA51GAG (1147A>G) TTA53CTA (1151T>C) AAA54AAG (1156A>G) CCA62CCG (1180A>G) AGA64AAG (1185G>A 1186A>G) GAG65GAA (1189G>A) GAA66GAG (1192A>G) ATG72ATA (1210G>A) TCC75TCT (1219C>T) GCG79GCA (1231G>A) GTG80GTC (1234G>C) TTG81CTG (1235T>C) CAC90CAT (1264C>T) ACT92ACC (1270T>C) GCC93ACC (1271G>A) CTC94TTG (1274C>T 1276C>G) AGC100AGT (1294C>T) ACT107ACA (1315T>A) CTC110CTT (1324C>T) AGA116AGG (1342A>G) AAG117AAA (1345G>A) CTT118CTC (1348T>C) TCG119TCA (1351G>A) GCT123GCC (1363T>C) CCT125CCC (1369T>C) GAT126GAC (1372T>C) GCT133GCC (1393T>C) GCC139GCT (1411C>T) GCT140GCC (1414T>C) CGC142CGT (1420C>T) TCC143TCT (1423C>T) CAT146CAC (1432T>C) CGG147CGA (1435G>A) AAA149AAG (1441A>G) CTC152CTT (1450C>T) GTT159GTG (1471T>G) GTT160GTG (1474T>G) GTG161TTG (1475G>T) GGT165GGC (1489T>C) AAG166AGG (1491A>G) GGG168GGA (1498G>A) AAA171AAG (1507A>G) CTT174CTC (1516T>C) GCC175GCT (1519C>T) TTG178GTG (1526T>G) GCC179GCT (1531C>T) AAA181AGA (1536A>G) GCT184GCC (1546T>C) TCT185TCC (1549T>C) CTC186CTT (1552C>T) GGG188GGA (1558G>A) GGT193GGC (1573T>C) CTT194CTC (1576T>C) CCG196CCA (1582G>A) GGT199GGC (1591T>C) GTT200GTC (1594T>C) GAT201GAC (1597T>C) CAC202CAT (1600C>T) GAC204GAT (1606C>T) GCA205GCG (1609A>G) TAT206TAC (1612T>C) GGA208GGG (1618A>G) GAA209GAG (1621A>G) AGA210AGG (1624A>G) GTT212GTC (1630T>C) GAC216GAT (1642C>T) AGT220AGC (1654T>C) CCC222CCT (1660C>T) ATC223ATT (1663C>T) GAC225GAT (1669C>T) TTA229CTG (1679T>C 1681A>G) CTT232CTC (1690T>C) ACC235ACT (1699C>T) ACG239ACT (1711G>T) AAT241AAC (1717T>C) GAT243GAC (1723T>C) ATT245ATC (1729T>C) GAG246GAA (1732G>A) AGT254AGC (1756T>C) GCC256GTC (1761C>T) ATA257ATC (1765A>C) ATC258ATT (1768C>T) AAC262AAT (1780C>T) GCA267GCG (1795A>G) AAT273AAC (1813T>C) CGT280CGC (1834T>C) GAT288GAA (1858T>A) GAG293GAA (1873G>A) AAA296AAG (1882A>G) GAT298GAC (1888T>C) GGT301GGC (1897T>C) CAA302CAG (1900A>G) CCT312TCT (1928C>T) GAC313GAT (1933C>T) TCG315TCA (1939G>A) CTG319CTA (1951G>A) ATG320GCA (1952A>G 1953T>C 1954G>A) GCT322GCC (1960T>C) CCG323CCA (1963G>A) GGC326GGT (1972C>T) GGA331GGG (1987A>G) CAT335CAC (1999T>C) GGG336GGA (2002G>A) AAA337AAG (2005A>G) GTC339GTT (2011C>T) AAA341AAG (2017A>G) ACC342ACT (2020C>T) ACT344ACC (2026T>C) GGT346GGC (2032T>C) CTC348CTT (2038C>T) ATC349ATT (2041C>T) GCT350GCC (2044T>C) CGA351CGG (2047A>G) CTA355TTA (2057C>T) GAG362GAA (2080G>A) TAC363TTT (2082A>T 2083C>T) GAG364GAA (2086G>A) TTA365CTG (2087T>C 2089A>G)
1179100%113392.6%179 (100%)162 (90.5%)0/0/0/00
Protein mutations:
T3A (2099A>G 2101C>T) P4L (2103C>T) R48K (2235G>A) I54V (2252A>G) S58K (2265G>A 2266T>G) G64S (2282G>A) M69I (2299G>A) D77N (2321G>A) V83I (2339G>A 2341T>C) N85S (2346A>G) T87A (2351A>G 2353T>C) I113V (2429A>G 2431T>C) V134A (2493T>C) D150N (2540G>A 2542T>C) A155T (2555G>A 2557T>C) D167E (2593C>G) V171I (2603G>A)
Codon mutations:
ACC3GCT (2099A>G 2101C>T) CCC4CTC (2103C>T) ACT5ACC (2107T>C) AAC8AAT (2116C>T) TTT9TTC (2119T>C) GAC10GAT (2122C>T) AAC12AAT (2128C>T) GCG16GCC (2140G>C) TTC17TTT (2143C>T) AAC24AAT (2164C>T) AAG25AAA (2167G>A) TAC26TAT (2170C>T) GGG27GGA (2173G>A) GTC34GTT (2194C>T) GGA35GGG (2197A>G) AGG42AGA (2218G>A) GAG46GAA (2230G>A) AGA48AAA (2235G>A) AAC53AAT (2251C>T) ATC54GTC (2252A>G) AGT58AAG (2265G>A 2266T>G) CAG60CAA (2272G>A) GGT64AGT (2282G>A) GGC65GGT (2287C>T) TAT68TAC (2296T>C) ATG69ATA (2299G>A) GGT76GGC (2320T>C) GAT77AAT (2321G>A) GTT83ATC (2339G>A 2341T>C) CAG84CAA (2344G>A) AAC85AGC (2346A>G) ACT87GCC (2351A>G 2353T>C) GAA93GAG (2371A>G) GCC95GCT (2377C>T) GGC96GGT (2380C>T) CTA98CTG (2386A>G) CTT101TTG (2393C>T 2395T>G) TGT103TGC (2401T>C) AGG105AGA (2407G>A) ATT106ATC (2410T>C) TAT108TAC (2416T>C) TGC112TGT (2428C>T) ATT113GTC (2429A>G 2431T>C) ATC121ATT (2455C>T) GGA125GGG (2467A>G) GTC134GCC (2493T>C) CTT142CTA (2518T>A) CAG147CAA (2533G>A) GAT150AAC (2540G>A 2542T>C) GCT155ACC (2555G>A 2557T>C) GAT158GAC (2566T>C) CCC163CCT (2581C>T) GAT165GAC (2587T>C) GAC167GAG (2593C>G) TTC169TTT (2599C>T) GTT170GTC (2602T>C) GTT171ATT (2603G>A) ACC178ACT (2626C>T)
1133100%87897.2%133 (100%)129 (97.0%)0/0/0/00
Protein mutations:
S8T (2651T>A) N38S (2742A>G 2743C>T) R129K (3015G>A) N131S (3021A>G)
Codon mutations:
GGC1GGT (2632C>T) GGA4GGG (2641A>G) TCT8ACT (2651T>A) CGT10CGC (2659T>C) GGT11GGC (2662T>C) TTC17TTT (2680C>T) GAG25GAA (2704G>A) AAA31AAG (2722A>G) AGA32AGG (2725A>G) ATC33ATT (2728C>T) AGA37AGG (2740A>G) AAC38AGT (2742A>G 2743C>T) TCT42TCC (2755T>C) GAG44GAA (2761G>A) GAA45GAG (2764A>G) AGA50AGG (2779A>G) GAT51GAC (2782T>C) AAG52AAA (2785G>A) TAT53TAC (2788T>C) ATC59ATT (2806C>T) ACC63ACT (2818C>T) GAA64GAG (2821A>G) GAG65GAA (2824G>A) GAA70GAG (2839A>G) GAA71GAG (2842A>G) CGA76CGG (2857A>G) ATT79ATC (2866T>C) AAG85AAA (2884G>A) AAA88AAG (2893A>G) GAG90GAA (2899G>A) AGG91AGA (2902G>A) GGC95GGT (2914C>T) TTG96CTG (2915T>C) GGT99GGC (2926T>C) ATC102ATT (2935C>T) AAG104AAA (2941G>A) AGG105AGA (2944G>A) GAC108GAT (2953C>T) AAG111AAA (2962G>A) CCT112CCC (2965T>C) GGA114GGG (2971A>G) AAG115AAA (2974G>A) CTG116TTG (2975C>T) GAT119GAC (2986T>C) GAC120GAT (2989C>T) GTT124GTG (3001T>G) AGA129AAA (3015G>A) AAT131AGT (3021A>G) GAA133GAG (3028A>G)
1181100%125997.7%181 (100%)176 (97.2%)0/0/0/00
Protein mutations:
Q37K (3137C>A) S43P (3155T>C) I49V (3173A>G) P90S (3296C>T 3298A>C) I152V (3482A>G 3484A>G)
Codon mutations:
ATT5ATC (3043T>C) AGG8AGA (3052G>A) GGT15GGC (3073T>C) GGT17GGA (3079T>A) GTT20GTC (3088T>C) AGC23AGT (3097C>T) ACT29ACC (3115T>C) CAG37AAG (3137C>A) GGG41GGA (3151G>A) GTT42GTC (3154T>C) TCC43CCC (3155T>C) AAG45AAA (3163G>A) ATT47ATA (3169T>A) ATA49GTA (3173A>G) AAA51AAG (3181A>G) TCG52TCA (3184G>A) GGT53GGC (3187T>C) GAA54GAG (3190A>G) AGG59AGA (3205G>A) TTT60TTC (3208T>C) AGA65AGG (3223A>G) ACA69ACG (3235A>G) CTA73TTA (3245C>T) GGT76GGC (3256T>C) GCG77GCA (3259G>A) CCC78CCT (3262C>T) GAA79GAG (3265A>G) GGG80GGC (3268G>C) ACC81ACT (3271C>T) TTA85CTA (3281T>C) AAG88AAA (3292G>A) AGA89AGG (3295A>G) CCA90TCC (3296C>T 3298A>C) GGA92GGG (3304A>G) TTG97CTA (3317T>C 3319G>A) GCC99GCT (3325C>T) AGA100AGG (3328A>G) GGA102GGG (3334A>G) GCA105GCG (3343A>G) ATA109ATC (3355A>C) GGG115GGA (3373G>A) GGT116GGC (3376T>C) CAA117CAG (3379A>G) CTC121CTT (3391C>T) CTA122CTG (3394A>G) TCT125TCC (3403T>C) AGT129AGC (3415T>C) GGC133GGT (3427C>T) ACC134ACT (3430C>T) GAC138GAT (3442C>T) TGT141TGC (3451T>C) TAC143TAT (3457C>T) ATT144ATC (3460T>C) GGG148GGT (3472G>T) TAC151TAT (3481C>T) ATA152GTG (3482A>G 3484A>G) GGA155GGG (3493A>G) GCT160GCC (3508T>C) GCC161GCA (3511C>A) GGA163GGG (3517A>G) GGA164GGG (3520A>G) AGC174AGT (3550C>T) GAG175GAA (3553G>A) GGG176GGA (3556G>A) GAA177GAG (3559A>G) GCC178GCT (3562C>T)
1510100%349197.2%510 (100%)494 (96.9%)0/0/0/00
Protein mutations:
K21T (3633A>C 3634G>A) P35S (3674C>T) D65E (3766C>G) Q102E (3875C>G 3877A>G) G163A (4059G>C) E204D (4183G>T) V215I (4214G>A 4216C>T) K236T (4278A>C) N270H (4379A>C 4381T>C) K274V (4391A>G 4392A>T 4393G>A) M285V (4424A>G) K291T (4443A>C) I331T (4563T>C 4564T>C) K363R (4659A>G 4660G>A) D386N (4727G>A) E424G (4842A>G)
Codon mutations:
GGC1GGT (3574C>T) GGA6GGG (3589A>G) ACC7ACA (3592C>A) TGC9TGT (3598C>T) TTA14CTA (3611T>C) GGT15GGC (3616T>C) AAG21ACA (3633A>C 3634G>A) CTC22CTT (3637C>T) AAG25AAA (3646G>A) ACT26ACC (3649T>C) AAG27AAA (3652G>A) TTT28TTC (3655T>C) TCA31TCG (3664A>G) CCA35TCA (3674C>T) GGT39GGC (3688T>C) GGC47GGT (3712C>T) CCC51CCT (3724C>T) AGA52AGG (3727A>G) AAG54AAA (3733G>A) CCC57CCT (3742C>T) TTG59CTG (3746T>C) CAA60CAG (3751A>G) GTT62GTC (3757T>C) GAC65GAG (3766C>G) CTG67TTG (3770C>T) AAA68AAG (3775A>G) ACT71ACA (3784T>A) AAA76AAG (3799A>G) GTG82GTA (3817G>A) GAG84GAA (3823G>A) AAA88AAG (3835A>G) GTT93GTC (3850T>C) GAA95GAG (3856A>G) GAC99GAT (3868C>T) CAA102GAG (3875C>G 3877A>G) TCA105TCG (3886A>G) GCG107GCA (3892G>A) CAG108CAA (3895G>A) GCA109GCT (3898A>T) GCA111GCG (3904A>G) CTC113CTT (3910C>T) AGC119AGT (3928C>T) GGC120GGT (3931C>T) CAC121CAT (3934C>T) AAG127AAA (3952G>A) AAA139AAG (3988A>G) TTG140CTG (3989T>C) GCT147GCC (4012T>C) TTC151TTT (4024C>T) GAG153GAA (4030G>A) GGA154GGG (4033A>G) GGT163GCT (4059G>C) CTT165CTC (4066T>C) GAC167GAT (4072C>T) CTG169TTA (4076C>T 4078G>A) GTC170GTT (4081C>T) AAG171AAA (4084G>A) GGC177GGT (4102C>T) AAA180AAG (4111A>G) GAT188GAC (4135T>C) CTG189TTG (4136C>T) GCA190GCG (4141A>G) GCG198GCA (4165G>A) TTT199TTC (4168T>C) CTG202CTA (4177G>A) GAG204GAT (4183G>T) CAT209CAC (4198T>C) CTA213CTT (4210A>T) GTC215ATT (4214G>A 4216C>T) GTA217GTT (4222A>T) GGT218GGC (4225T>C) CCT226CCC (4249T>C) TTT229TTC (4258T>C) CAC232CAT (4267C>T) AGA234AGG (4273A>G) TAT235TAC (4276T>C) AAG236ACG (4278A>C) CAT238CAC (4285T>C) TCC244TCT (4303C>T) CGG245CGA (4306G>A) GAC247GAT (4312C>T) CAA251CAG (4324A>G) TTA255TTG (4336A>G) GCC258GCT (4345C>T) TTA259CTA (4346T>C) AAG264AAA (4363G>A) CCG269CCA (4378G>A) AAT270CAC (4379A>C 4381T>C) CTG271TTG (4382C>T) GCC272GCT (4387C>T) CAA273CAG (4390A>G) AAG274GTA (4391A>G 4392A>T 4393G>A) GTT275GTC (4396T>C) GCA276GCG (4399A>G) GAA277GAG (4402A>G) CTC280CTT (4411C>T) CCC282CCT (4417C>T) ATG285GTG (4424A>G) GTA287GTG (4432A>G) GGT288GGC (4435T>C) AAA291ACA (4443A>C) AAT295AAC (4456T>C) GGC297GGT (4462C>T) CTC298CTT (4465C>T) TCC300TCT (4471C>T) AAT309AAC (4498T>C) CTC315CTT (4516C>T) ACC317ACT (4522C>T) CTT321CTC (4534T>C) GAG323GAA (4540G>A) GTT324GTC (4543T>C) GAC330GAT (4561C>T) ATT331ACC (4563T>C 4564T>C) ATC332ATA (4567C>A) AAT335AAC (4576T>C) TTT338TTC (4585T>C) TCC339TCT (4588C>T) TTC340TTT (4591C>T) TAC341TAT (4594C>T) GTG347GTT (4612G>T) GAG356GAA (4639G>A) AAG357AAA (4642G>A) AAA361AAG (4654A>G) CTT362CTC (4657T>C) AAG363AGA (4659A>G 4660G>A) TAC365TAT (4666C>T) TTG367TTA (4672G>A) CCG369CCA (4678G>A) AAG374AAA (4693G>A) GAG376GAA (4699G>A) GTT380GTC (4711T>C) GAG383GAA (4720G>A) GAT386AAT (4727G>A) ACC389ACT (4738C>T) AGG393AGA (4750G>A) GGC401GGT (4774C>T) AAG405AAA (4786G>A) GAA407GAG (4792A>G) AGC409AGT (4798C>T) CTT412CTC (4807T>C) TAT416TAC (4819T>C) GGC420GGT (4831C>T) CCT421CCC (4834T>C) GAA424GGA (4842A>G) ATA431ATT (4864A>T) TCT442TCC (4897T>C) TTG443CTA (4898T>C 4900G>A) GGC445GGG (4906C>G) GCT447GCC (4912T>C) GCA448GCT (4915A>T) TTC454TTT (4933C>T) AAG460AAA (4951G>A) CTG461TTG (4952C>T) CTG466CTA (4969G>A) AAG467AAA (4972G>A) AGG486AGA (5029G>A) TTT487TTC (5032T>C)
1536100%271871.2%534 (98.3%)357 (65.7%)7/2/0/01
Protein mutations:
A9N (5109G>A 5110C>A 5111T>C) N12D (5118A>G) D13G (5122A>G 5123T>G) G14S (5124G>T 5125G>C 5126T>C) A15T (5127G>A) G17N (5133G>A 5134G>A 5135T>C) A22V (5149C>T 5150T>C) T26V (5160A>G 5161C>T 5162C>T) A33V (5182C>T) S36A (5190T>G 5192A>C) L41V (5205C>G 5207C>A) T42A (5208A>G 5210C>G) N45Q (5217A>C 5219C>A) I47V (5223A>G 5225T>A) L54N (5244T>A 5245T>A 5246A>C) N61G (5265A>G 5266A>G) S71A (5295T>G 5297G>T) V75I (5307G>A 5309C>A) L77W (5314T>G 5315A>G) N78S (5317A>G 5318T>C) L79A (5319T>G 5320T>C) E80P (5322G>C 5323A>C 5324A>C) E84D (5336A>T) A90S (5352G>T 5354A>C) S93A (5361T>G 5363T>C) V103F (5391G>T) L108I (5406C>A 5408A>C) L119I (5439C>A 5441G>C) V120I (5442G>A 5444G>A) H127N (5463C>A) L130T (5472T>A 5473T>C 5474A>T) N132G (5478A>G 5479A>G) I133L (5481A>T 5483A>G) G136S (5490G>A) I138V (5496A>G 5498A>C) V144I (5514G>A) I146V (5520A>G 5522T>A) T150Q (5532A>C 5533C>A 5534T>A) L156I (5550T>A 5552G>T) F166Y (5581T>A 5582T>C) Q171S (5595C>T 5596A>C 5597G>A) E173D (5603A>C) R175T (5608G>C 5609G>C) M176I (5612G>C) R177K (5614G>A) V179I (5619G>A) S188A (5646T>G) G190N (5652G>A 5653G>A) S191A (5655T>G 5657T>C) N213I (5722A>T 5723T>A) Y214F (5725A>T) K223R (5752A>G) T228S (5766A>T 5768A>T) L229V (5769C>G) I231V (5775A>G 5777C>T) I234V (5784A>G 5786A>T) G235E (5788G>A) L237M (5793T>A 5795A>G) V244I (5814G>A 5816A>T) I246L (5820A>T 5822A>G) D247E (5825T>A) E248K (5826G>A) Y250F (5833A>T) S252G (5838A>G 5840T>C) N254S (5845A>G) E255S (5847G>A 5848A>G 5849G>T) S256A (5850A>G 5851G>C 5852T>C) L257F (5853C>T 5855G>T) A267T (5883G>A 5885A>G) L268T (5886C>A 5887T>C 5888A>T) E271V (5896A>T) Q273L (5902A>T 5903G>A) L279S (5919C>T 5920T>C 5921C>T) T281V (5925A>G 5926C>T 5927G>C) A282N (5928G>A 5929C>A 5930G>C) S285T (5937T>A 5939G>C) R289D (5949C>G 5950G>A 5951G>C) I290V (5952A>G) N291T (5956A>C 5957T>C) Q292H (5960G>T) K293I (5962A>T 5963G>T) V294P (5964G>C 5965T>C 5966G>A) S295G (5967A>G 5969T>C) G296S (5970G>A 5972G>T) E297R (5973G>C 5974A>G 5975A>T) H299_V300del (5979_5984delCATGTT) W301Y (5986G>A 5987G>C) N302T (5989A>C 5990T>A) Q304N (5994C>A 5996G>T) V305L (5997G>T 5999C>G) T306A (6000A>G) N307S (6003A>T 6004A>C) I308Q (6006A>C 6007T>A 6008C>A) G310W (6012G>T) T311N (6016C>A) P312S (6018C>A 6019C>G) F313Y (6022T>A 6023T>C) D318E (6038T>A) V319I (6039G>A) S329V (6069T>G 6070C>T 6071T>G) L332I (6078C>A 6080C>T) F333Q (6081T>C 6082T>A 6083T>A) S337T (6094G>C) R339T (6100G>C 6101A>C) D340T (6102G>A 6103A>C 6104C>A) H341R (6105C>A 6106A>G 6107T>G) D342T (6108G>A 6109A>C 6110T>A) A344G (6115C>G) C345S (6118G>C 6119C>G) C345_R346insT (6119_6120insACC) S347G (6123A>G 6125T>C) D349K (6129G>A 6131T>A) V351T (6135G>A 6136T>C) I352V (6138A>G 6140T>G) A353Y (6141G>T 6142C>A 6143A>C) N355G (6147A>G 6148A>G 6149C>G) K358D (6156A>G 6158A>C) T360S (6162A>T 6164C>T) A365R (6177G>A 6178C>G 6179T>A) I366V (6180A>G 6182A>T) I368F (6186A>T) G369A (6190G>C) W371D (6195T>G 6196G>A 6197G>C) E372T (6198G>A 6199A>C) E373D (6203A>C) D374N (6204G>A 6206C>T) V376F (6210G>T 6212G>T) H377E (6213C>G 6215C>A) I378T (6217T>C 6218C>T) P381N (6225C>A 6226C>A 6227T>C) L389V (6249T>G 6251G>T) F390I (6252T>A 6254T>C) E391Q (6255G>C 6257A>G) G394S (6264G>A) F395T (6267T>A 6268T>C) N396T (6271A>C) N396_Q397insPRNEPQ (6272_6273insCCCCGAAATGAACCCCAA) T399V (6279A>G 6280C>T 6281A>G) N402S (6289A>G) A406R (6300G>A 6301C>G 6302C>A) L407N (6303T>A 6304T>A 6305A>C) T408I (6307C>T 6308A>T) L409H (6310T>A) M411V (6315A>G) G412H (6318G>C 6319G>A 6320A>C) P416A (6330C>G) I426L (6360A>C 6362T>C) H432T (6378C>A 6379A>C 6380C>T) I433M (6383T>G) L435G (6387C>G 6388T>G 6389T>A) K436C (6390A>T 6391A>G 6392A>C) G437S (6393G>A 6395A>C) V439Y (6399G>T 6400T>A 6401G>C) A440P (6402G>C 6404G>C) D441N (6405G>A) P442M (6408C>A 6409C>T 6410A>G) V443D (6412T>A 6413T>C) I444L (6414A>T 6416T>G) I453V (6441A>G 6443C>G) H455Y (6447C>T) L456F (6450C>T 6452T>C) S460A (6462T>G 6464G>A) S463A (6471T>G) I470L (6492A>C 6494T>A) T473V (6501A>G 6502C>T 6503A>G) A484C (6534G>T 6535C>G 6536A>T) R488K (6547G>A 6548G>A) I492V (6558A>G 6560C>T) N496H (6570A>C 6572T>C) S499Q (6579A>C 6580G>A 6581C>A) R500H (6582A>C 6583G>A 6584A>T) P501D (6585C>G 6586C>A 6587G>T) I502L (6588A>T 6590T>G) V504I (6594G>A 6596A>C) A506P (6600G>C 6602T>C) S521T (6645T>A 6647T>A) T527N (6664C>A) N529T (6670A>C 6671T>G) V534A (6685T>C 6686G>A) Q535L (6687C>T 6688A>T 6689G>A)
Codon mutations:
GCT9AAC (5109G>A 5110C>A 5111T>C) AAT12GAT (5118A>G) GAT13GGG (5122A>G 5123T>G) GGT14TCC (5124G>T 5125G>C 5126T>C) GCA15ACA (5127G>A) GGT17AAC (5133G>A 5134G>A 5135T>C) GTA19GTC (5141A>C) GCT22GTC (5149C>T 5150T>C) AAC23AAT (5153C>T) ACC26GTT (5160A>G 5161C>T 5162C>T) GCA28GCT (5168A>T) CTT29TTG (5169C>T 5171T>G) GAA30GAG (5174A>G) CCG31CCC (5177G>C) GTG32GTA (5180G>A) GCT33GTT (5182C>T) GGG34GGT (5186G>T) GCT35GCC (5189T>C) TCA36GCC (5190T>G 5192A>C) ATA37ATT (5195A>T) GCC38GCG (5198C>G) GCC39GCA (5201C>A) CCA40CCT (5204A>T) CTC41GTA (5205C>G 5207C>A) ACC42GCG (5208A>G 5210C>G) AAC45CAA (5217A>C 5219C>A) ATT47GTA (5223A>G 5225T>A) ATA48ATT (5228A>T) TTA54AAC (5244T>A 5245T>A 5246A>C) GTG57GTA (5255G>A) CAG58CAA (5258G>A) GCT59GCC (5261T>C) CCC60CCT (5264C>T) AAT61GGT (5265A>G 5266A>G) TTC64TTT (5276C>T) ACG65ACA (5279G>A) GTT66GTA (5282T>A) TCA67TCC (5285A>C) CCC68CCT (5288C>T) CGC69AGA (5289C>A 5291C>A) TCG71GCT (5295T>G 5297G>T) CCC72CCA (5300C>A) GGG73GGT (5303G>T) GTC75ATA (5307G>A 5309C>A) TTA77TGG (5314T>G 5315A>G) AAT78AGC (5317A>G 5318T>C) TTG79GCG (5319T>G 5320T>C) GAA80CCC (5322G>C 5323A>C 5324A>C) CCC83CCT (5333C>T) GAA84GAT (5336A>T) CTA85TTG (5337C>T 5339A>G) CCA87CCT (5345A>T) CTA89CTT (5351A>T) GCA90TCC (5352G>T 5354A>C) CAC91CAT (5357C>T) CTC92TTG (5358C>T 5360C>G) TCT93GCC (5361T>G 5363T>C) TAT96TAC (5372T>C) GCG100GCA (5384G>A) GGG102GGT (5390G>T) GTT103TTT (5391G>T) GAG104GAA (5396G>A) CAA106CAG (5402A>G) CTA108ATC (5406C>A 5408A>C) CTG109CTC (5411G>C) GCT110GCG (5414T>G) AAT112AAC (5420T>C) ACA115ACC (5429A>C) GCT116GCC (5432T>C) GGA117GGG (5435A>G) CTG119ATC (5439C>A 5441G>C) GTG120ATA (5442G>A 5444G>A) GCC122GCA (5450C>A) GTT124GTC (5456T>C) CCC125CCA (5459C>A) CCT126CCA (5462T>A) CAT127AAT (5463C>A) TTT128TTC (5468T>C) TTA130ACT (5472T>A 5473T>C 5474A>T) AAT132GGT (5478A>G 5479A>G) ATA133TTG (5481A>T 5483A>G) CCT135CCC (5489T>C) GGC136AGC (5490G>A) ATA138GTC (5496A>G 5498A>C) CCT142CCC (5510T>C) CAT143CAC (5513T>C) GTA144ATA (5514G>A) ATT145ATA (5519T>A) ATT146GTA (5520A>G 5522T>A) ACT150CAA (5532A>C 5533C>A 5534T>A) TTA151TTG (5537A>G) CCA153CCT (5543A>T) GTT154GTG (5546T>G) TTG156ATT (5550T>A 5552G>T) CTT158TTA (5556C>T 5558T>A) CCT159CCC (5561T>C) GTT161GTC (5567T>C) TTT166TAC (5581T>A 5582T>C) CAG170CAA (5594G>A) CAG171TCA (5595C>T 5596A>C 5597G>A) GAA173GAC (5603A>C) CCG174CCC (5606G>C) AGG175ACC (5608G>C 5609G>C) ATG176ATC (5612G>C) AGA177AAA (5614G>A) CTT178TTG (5616C>T 5618T>G) GTA179ATA (5619G>A) CTT182TTG (5628C>T 5630T>G) TAT183TAC (5633T>C) ACT184ACA (5636T>A) CCT185CCA (5639T>A) AGA187AGG (5645A>G) TCT188GCT (5646T>G) GGT190AAT (5652G>A 5653G>A) TCT191GCC (5655T>G 5657T>C) GGT192GGG (5660T>G) GAT193GAC (5663T>C) GTA195GTC (5669A>C) ACT197ACA (5675T>A) GTC198GTT (5678C>T) TCC199TCT (5681C>T) TGC200TGT (5684C>T) AGG201CGA (5685A>C 5687G>A) GTG202GTT (5690G>T) CTT203CTC (5693T>C) ACC204ACG (5696C>G) CGA205AGA (5697C>A) CCT206CCA (5702T>A) CCT208CCC (5708T>C) TTT212TTC (5720T>C) AAT213ATA (5722A>T 5723T>A) TAT214TTT (5725A>T) GTC216GTG (5732C>G) CCC217CCA (5735C>A) CCT218CCC (5738T>C) ACT219ACA (5741T>A) TCT222TCA (5750T>A) AAA223AGA (5752A>G) ACC224ACT (5756C>T) CCC226CCA (5762C>A) ACA228TCT (5766A>T 5768A>T) CTC229GTC (5769C>G) CCT230CCA (5774T>A) ATC231GTT (5775A>G 5777C>T) TTG232TTA (5780G>A) ATA234GTT (5784A>G 5786A>T) GGG235GAG (5788G>A) TTA237ATG (5793T>A 5795A>G) AAC239AAT (5801C>T) TCC240TCA (5804C>A) CCT243CCC (5813T>C) GTA244ATT (5814G>A 5816A>T) ATA246TTG (5820A>T 5822A>G) GAT247GAA (5825T>A) GAG248AAG (5826G>A) CTC249TTG (5829C>T 5831C>G) TAC250TTC (5833A>T) ACC251ACG (5837C>G) AGT252GGC (5838A>G 5840T>C) AAT254AGT (5845A>G) GAG255AGT (5847G>A 5848A>G 5849G>T) AGT256GCC (5850A>G 5851G>C 5852T>C) CTG257TTT (5853C>T 5855G>T) GTG258GTT (5858G>T) GTG259GTT (5861G>T) CCC261CCA (5867C>A) CAG262CAA (5870G>A) GGG264GGC (5876G>C) AGA265AGG (5879A>G) GCA267ACG (5883G>A 5885A>G) CTA268ACT (5886C>A 5887T>C 5888A>T) GGG270GGC (5894G>C) GAG271GTG (5896A>T) CTG272CTC (5900G>C) CAG273CTA (5902A>T 5903G>A) GGC274GGT (5906C>T) ACG275ACT (5909G>T) ACT276ACC (5912T>C) CAG277CAA (5915G>A) CTC278CTG (5918C>G) CTC279TCT (5919C>T 5920T>C 5921C>T) ACG281GTC (5925A>G 5926C>T 5927G>C) GCG282AAC (5928G>A 5929C>A 5930G>C) TCG285ACC (5937T>A 5939G>C) AGG287AGA (5945G>A) GGC288GGG (5948C>G) CGG289GAC (5949C>G 5950G>A 5951G>C) ATC290GTC (5952A>G) AAT291ACC (5956A>C 5957T>C) CAG292CAT (5960G>T) AAG293ATT (5962A>T 5963G>T) GTG294CCA (5964G>C 5965T>C 5966G>A) AGT295GGC (5967A>G 5969T>C) GGG296AGT (5970G>A 5972G>T) GAA297CGT (5973G>C 5974A>G 5975A>T) CAT299_GTT300del (5979_5984delCATGTT) TGG301TAC (5986G>A 5987G>C) AAT302ACA (5989A>C 5990T>A) CAG304AAT (5994C>A 5996G>T) GTC305TTG (5997G>T 5999C>G) ACC306GCC (6000A>G) AAC307TCC (6003A>T 6004A>C) ATC308CAA (6006A>C 6007T>A 6008C>A) AAC309AAT (6011C>T) GGG310TGG (6012G>T) ACC311AAC (6016C>A) CCT312AGT (6018C>A 6019C>G) TTT313TAC (6022T>A 6023T>C) GAG317GAA (6035G>A) GAT318GAA (6038T>A) GTC319ATC (6039G>A) CCG320CCA (6044G>A) GCT321GCC (6047T>C) GGC324GGA (6056C>A) TCT329GTG (6069T>G 6070C>T 6071T>G) GGC330GGG (6074C>G) CTC332ATT (6078C>A 6080C>T) TTT333CAA (6081T>C 6082T>A 6083T>A) GTA335GTG (6089A>G) CTA336CTC (6092A>C) AGC337ACC (6094G>C) CAG338CAA (6098G>A) AGA339ACC (6100G>C 6101A>C) GAC340ACA (6102G>A 6103A>C 6104C>A) CAT341AGG (6105C>A 6106A>G 6107T>G) GAT342ACA (6108G>A 6109A>C 6110T>A) GCC344GGC (6115C>G) TGC345TCG (6118G>C 6119C>G) TGC345_AGG346insACC (6119_6120insACC) AGG346CGC (6120A>C 6122G>C) AGT347GGC (6123A>G 6125T>C) CAT348CAC (6128T>C) GAT349AAA (6129G>A 6131T>A) GCA350GCT (6134A>T) GTA351ACA (6135G>A 6136T>C) ATT352GTG (6138A>G 6140T>G) GCA353TAC (6141G>T 6142C>A 6143A>C) ACC354ACT (6146C>T) AAC355GGG (6147A>G 6148A>G 6149C>G) TCT356AGC (6150T>A 6151C>G 6152T>C) AAA358GAC (6156A>G 6158A>C) ACC360TCT (6162A>T 6164C>T) TTG363CTG (6171T>C) GGC364GGT (6176C>T) GCT365AGA (6177G>A 6178C>G 6179T>A) ATA366GTT (6180A>G 6182A>T) ATT368TTT (6186A>T) GGC369GCC (6190G>C) ACA370ACT (6194A>T) TGG371GAC (6195T>G 6196G>A 6197G>C) GAA372ACA (6198G>A 6199A>C) GAA373GAC (6203A>C) GAC374AAT (6204G>A 6206C>T) GTG376TTT (6210G>T 6212G>T) CAC377GAA (6213C>G 6215C>A) ATC378ACT (6217T>C 6218C>T) CCT381AAC (6225C>A 6226C>A 6227T>C) ACT382ACA (6230T>A) TTT384TTC (6236T>C) ACT385ACC (6239T>C) GTT387GTC (6245T>C) GGC388GGT (6248C>T) TTG389GTT (6249T>G 6251G>T) TTT390ATC (6252T>A 6254T>C) GAA391CAG (6255G>C 6257A>G) GGA393GGT (6263A>T) GGT394AGT (6264G>A) TTC395ACC (6267T>A 6268T>C) AAC396ACC (6271A>C) AAC396_CAG397insCCCCGAAATGAACCCCAA (6272_6273insCCCCGAAATGAACCCCAA) CAG397CAA (6275G>A) ACA399GTG (6279A>G 6280C>T 6281A>G) CCC401CCA (6287C>A) AAT402AGT (6289A>G) TAT403TAC (6293T>C) TCT404TCA (6296T>A) GGA405GGC (6299A>C) GCC406AGA (6300G>A 6301C>G 6302C>A) TTA407AAC (6303T>A 6304T>A 6305A>C) ACA408ATT (6307C>T 6308A>T) CTT409CAT (6310T>A) ATG411GTG (6315A>G) GGA412CAC (6318G>C 6319G>A 6320A>C) TTG413CTG (6321T>C) CCT415CCC (6329T>C) CCT416GCT (6330C>G) GTG417GTA (6335G>A) ACC420ACT (6344C>T) CCT422CCG (6350T>G) GGT423GGC (6353T>C) GAA424GAG (6356A>G) CAA425CAG (6359A>G) ATT426CTC (6360A>C 6362T>C) CTT427CTC (6365T>C) TTT429TTC (6371T>C) TCC431TCT (6377C>T) CAC432ACT (6378C>A 6379A>C 6380C>T) ATT433ATG (6383T>G) CCT434CCC (6386T>C) CTT435GGA (6387C>G 6388T>G 6389T>A) AAA436TGC (6390A>T 6391A>G 6392A>C) GGA437AGC (6393G>A 6395A>C) GGT438GGG (6398T>G) GTG439TAC (6399G>T 6400T>A 6401G>C) GCG440CCC (6402G>C 6404G>C) GAC441AAC (6405G>A) CCA442ATG (6408C>A 6409C>T 6410A>G) GTT443GAC (6412T>A 6413T>C) ATT444TTG (6414A>T 6416T>G) GAT445GAC (6419T>C) CTC447CTG (6425C>G) TTG448CTC (6426T>C 6428G>C) CCT449CCC (6431T>C) CAA450CAG (6434A>G) ATC453GTG (6441A>G 6443C>G) CAT455TAT (6447C>T) CTT456TTC (6450C>T 6452T>C) CAA458CAG (6458A>G) TCG460GCA (6462T>G 6464G>A) CCC462CCA (6470C>A) TCA463GCA (6471T>G) TCA465TCT (6479A>T) GTA467GTG (6485A>G) GCA468GCT (6488A>T) ATT470CTA (6492A>C 6494T>A) AGG471AGA (6497G>A) ACA473GTG (6501A>G 6502C>T 6503A>G) CCA475CCG (6509A>G) GGA478GGT (6518A>T) CGT479AGG (6519C>A 6521T>G) CTA481TTG (6525C>T 6527A>G) GAA483GAG (6533A>G) GCA484TGT (6534G>T 6535C>G 6536A>T) AAA485AAG (6539A>G) TTA486CTT (6540T>C 6542A>T) CAC487CAT (6545C>T) AGG488AAA (6547G>A 6548G>A) AGT489TCA (6549A>T 6550G>C 6551T>A) GGT490GGC (6554T>C) TAC491TAT (6557C>T) ATC492GTT (6558A>G 6560C>T) GCC495GCT (6569C>T) AAT496CAC (6570A>C 6572T>C) GGT498GGC (6578T>C) AGC499CAA (6579A>C 6580G>A 6581C>A) AGA500CAT (6582A>C 6583G>A 6584A>T) CCG501GAT (6585C>G 6586C>A 6587G>T) ATT502TTG (6588A>T 6590T>G) GTG503GTT (6593G>T) GTA504ATC (6594G>A 6596A>C) CCA505CCC (6599A>C) GCT506CCC (6600G>C 6602T>C) TAC509TAT (6611C>T) TTC510TTT (6614C>T) AGG511AGA (6617G>A) GAC513GAT (6623C>T) TCT514TCC (6626T>C) GTT516GTC (6632T>C) AAT517AAC (6635T>C) CAA518CAG (6638A>G) TAT520TAC (6644T>C) TCT521ACA (6645T>A 6647T>A) ACT527AAT (6664C>A) GGA528GGG (6668A>G) AAT529ACG (6670A>C 6671T>G) CGC531CGT (6677C>T) AGG533CGT (6681A>C 6683G>T) GTG534GCA (6685T>C 6686G>A) CAG535TTA (6687C>T 6688A>T 6689G>A)
1260100%98359.1%258 (95.2%)152 (56.1%)11/2/0/01
Protein mutations:
I6F (6707A>T 6709A>T) G11S (6722G>T 6723G>C) I13V (6728A>G 6730A>C) V14L (6731G>C 6733C>T) T15G (6734A>G 6735C>G) N16S (6737A>T 6738A>C) I18L (6743A>C) V22I (6755G>A 6757G>C) N27G (6770A>G 6771A>G 6772T>G) D34E (6793C>A) K39R (6807A>G 6808G>A) Q40K (6809C>A) Q40_L41insLQQASFQFSSN (6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT) N47Q (6830A>C 6832C>A) V57I (6860G>A 6862C>T) Q58E (6863C>G) Q62K (6875C>A) A65Q (6884G>C 6885C>A 6886T>G) D66E (6889T>A) I68M (6895T>G) A69R (6896G>A 6897C>G) I70V (6899A>G 6901C>T) R71K (6903G>A) G73A (6909G>C 6910G>A) V74M (6911G>A) T76L (6917A>C 6918C>T 6919C>A) A77E (6921C>A) P82E (6935C>G 6936C>A 6937C>G) V90I (6959G>A 6961T>C) Q96K (6977C>A 6979G>A) V97T (6980G>A 6981T>C) N101S (6993A>G 6994T>C) G109D (7017G>A 7018A>T) T111R (7023C>G) K112T (7026A>C 7027A>T) T115Y (7034A>T 7035C>A) F116N (7037T>A 7038T>A 7039C>T) S117A (7040T>G 7042C>A) G119R (7046G>C 7048A>C) T121S (7052A>T) N122T (7056A>C 7057T>C) V123P (7058G>C 7059T>C 7060T>C) S124Q (7061T>C 7062C>A 7063T>A) H125P (7065A>C 7066T>C) A126S (7067G>T 7069C>G) R127G (7070A>G 7072A>G) T128A (7073A>G 7075T>A) V129L (7076G>C 7078C>A) D130P (7079G>C 7080A>C 7081C>A) L131G (7082C>G 7083T>G 7084G>A) T132R (7086C>G 7087C>A) K133A (7088A>G 7089A>C 7090G>T) K134N (7093G>T) T135L (7094A>C 7095C>T 7096A>T) S136R (7097T>A 7098C>G 7099A>G) P139V (7106C>G 7107C>T 7108A>C) A140P (7109G>C 7111T>C) P141A (7112C>G 7114T>C) A142R (7115G>C 7116C>G) P143G (7118C>G 7119C>G) V144S (7121G>T 7122T>C 7123T>C) R146S (7129A>C) P147T (7130C>A 7132T>G) S148F (7133A>T 7134G>T) V150N (7139G>A 7140T>A) A151S (7142G>T 7144C>T) T153I (7149C>T 7150A>T) V154A (7152T>C 7153C>T) S155T (7154T>A 7156C>T) T156S (7157A>T 7159C>T) R157V (7160C>G 7161G>T 7162C>G) S158Y (7164C>A 7165A>T) T159S (7166A>T 7168C>A) L160N (7169T>A 7170T>A 7171G>T) I161Q (7172A>C 7173T>A 7174T>A) S162T (7176G>C) G163T (7178G>A 7179G>C 7180G>C) S165T (7184T>A 7186C>G) N166R (7188A>G 7189T>A) P167L (7191C>T) S168G (7193T>G 7194C>G) L170T (7199T>A 7200T>C) R172G (7205A>G 7207G>T) S174G (7211T>G 7212C>G) S175T (7214T>A 7216T>C) Q180L (7230A>T 7231A>C) T182_S183del (7235_7240delACCTCC) S185T (7244T>A) S186A (7247T>G 7249T>A) S189R (7258T>G) E190S (7259G>A 7260A>G 7261G>C) R193E (7268C>G 7269G>A 7270C>G) S194D (7271A>G 7272G>A 7273C>T) A198N (7283G>A 7284C>A 7285A>T) E200S (7289G>T 7290A>C 7291G>A) Y202F (7296A>T) L207H (7311T>A 7312A>T) R208N (7313C>A 7314G>A) T209I (7317C>T 7318A>C) A210S (7319G>T 7321C>G) Y211F (7323A>T) A219S (7346G>T 7348T>C) N222Q (7355A>C 7357T>A) S238G (7403T>G 7404C>G 7405T>C) H243R (7419A>G) L251I (7442C>A 7444C>T) R253K (7448C>A 7449G>A) Q258R (7464A>G 7465A>G)
Codon mutations:
TTT5TTC (6706T>C) ATA6TTT (6707A>T 6709A>T) GCG7GCT (6712G>T) GGG8GGA (6715G>A) CTT9TTG (6716C>T 6718T>G) GCT10GCA (6721T>A) GGT11TCT (6722G>T 6723G>C) ATA13GTC (6728A>G 6730A>C) GTC14CTT (6731G>C 6733C>T) ACC15GGC (6734A>G 6735C>G) AAT16TCT (6737A>T 6738A>C) GGC17GGA (6742C>A) ATT18CTT (6743A>C) GGC19GGT (6748C>T) TCA20TCC (6751A>C) CTT21CTA (6754T>A) GTG22ATC (6755G>A 6757G>C) AAC23AAT (6760C>T) AAT27GGG (6770A>G 6771A>G 6772T>G) GCA28GCC (6775A>C) ATA29ATC (6778A>C) GTA33GTT (6790A>T) GAC34GAA (6793C>A) AAC37AAT (6802C>T) AAG39AGA (6807A>G 6808G>A) CAA40AAA (6809C>A) CAA40_CTA41insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT (6811_6812insTTGCAACAAGCTTCCTTCCAATTTAGTAGCAAT) CAG42CAA (6817G>A) TCT45TCC (6826T>C) TTC46TTT (6829C>T) AAC47CAA (6830A>C 6832C>A) GAT49GAC (6838T>C) CTG53CTC (6850G>C) GCT55GCA (6856T>A) GTC57ATT (6860G>A 6862C>T) CAG58GAG (6863C>G) CAG62AAG (6875C>A) CTG63TTG (6878C>T) CAG64CAA (6883G>A) GCT65CAG (6884G>C 6885C>A 6886T>G) GAT66GAA (6889T>A) ATT68ATG (6895T>G) GCA69AGA (6896G>A 6897C>G) ATC70GTT (6899A>G 6901C>T) AGA71AAA (6903G>A) GGG73GCA (6909G>C 6910G>A) GTG74ATG (6911G>A) TTG75CTC (6914T>C 6916G>C) ACC76CTA (6917A>C 6918C>T 6919C>A) GCG77GAG (6921C>A) GGC78GGT (6925C>T) GGC79GGA (6928C>A) TCC81TCT (6934C>T) CCC82GAG (6935C>G 6936C>A 6937C>G) ACT83ACA (6940T>A) GCA86GCC (6949A>C) AGA87CGT (6950A>C 6952A>T) GTT90ATC (6959G>A 6961T>C) AAT91AAC (6964T>C) GCA92GCC (6967A>C) CCT93CCC (6970T>C) ACT95ACA (6976T>A) CAG96AAA (6977C>A 6979G>A) GTT97ACT (6980G>A 6981T>C) TTA98TTG (6985A>G) AAT101AGC (6993A>G 6994T>C) ACC103ACA (7000C>A) AGA104AGG (7003A>G) TAT105TAC (7006T>C) GCC107GCT (7012C>T) GGA109GAT (7017G>A 7018A>T) GCC110GCT (7021C>T) ACG111AGG (7023C>G) AAA112ACT (7026A>C 7027A>T) ACC113ACA (7030C>A) ACT114ACA (7033T>A) ACT115TAT (7034A>T 7035C>A) TTC116AAT (7037T>A 7038T>A 7039C>T) TCC117GCA (7040T>G 7042C>A) GGT118GGC (7045T>C) GGA119CGC (7046G>C 7048A>C) TTC120TTT (7051C>T) ACC121TCC (7052A>T) AAT122ACC (7056A>C 7057T>C) GTT123CCC (7058G>C 7059T>C 7060T>C) TCT124CAA (7061T>C 7062C>A 7063T>A) CAT125CCC (7065A>C 7066T>C) GCC126TCG (7067G>T 7069C>G) AGA127GGG (7070A>G 7072A>G) ACT128GCA (7073A>G 7075T>A) GTC129CTA (7076G>C 7078C>A) GAC130CCA (7079G>C 7080A>C 7081C>A) CTG131GGA (7082C>G 7083T>G 7084G>A) ACC132AGA (7086C>G 7087C>A) AAG133GCT (7088A>G 7089A>C 7090G>T) AAG134AAT (7093G>T) ACA135CTT (7094A>C 7095C>T 7096A>T) TCA136AGG (7097T>A 7098C>G 7099A>G) GCC137GCT (7102C>T) ACA138ACT (7105A>T) CCA139GTC (7106C>G 7107C>T 7108A>C) GCT140CCC (7109G>C 7111T>C) CCT141GCC (7112C>G 7114T>C) GCG142CGG (7115G>C 7116C>G) CCT143GGT (7118C>G 7119C>G) GTT144TCC (7121G>T 7122T>C 7123T>C) AGA146AGC (7129A>C) CCT147ACG (7130C>A 7132T>G) AGC148TTC (7133A>T 7134G>T) GTC150AAC (7139G>A 7140T>A) GCC151TCT (7142G>T 7144C>T) ACA153ATT (7149C>T 7150A>T) GTC154GCT (7152T>C 7153C>T) TCC155ACT (7154T>A 7156C>T) ACC156TCT (7157A>T 7159C>T) CGC157GTG (7160C>G 7161G>T 7162C>G) TCA158TAT (7164C>A 7165A>T) ACC159TCA (7166A>T 7168C>A) TTG160AAT (7169T>A 7170T>A 7171G>T) ATT161CAA (7172A>C 7173T>A 7174T>A) AGC162ACC (7176G>C) GGG163ACC (7178G>A 7179G>C 7180G>C) TCT164TCA (7183T>A) TCC165ACG (7184T>A 7186C>G) AAT166AGA (7188A>G 7189T>A) CCT167CTT (7191C>T) TCT168GGT (7193T>G 7194C>G) TTA170ACA (7199T>A 7200T>C) AGG172GGT (7205A>G 7207G>T) AGT173TCT (7208A>T 7209G>C) TCT174GGT (7211T>G 7212C>G) TCT175ACC (7214T>A 7216T>C) GTT177GTC (7222T>C) TCT178TCG (7225T>G) TCT179AGC (7226T>A 7227C>G 7228T>C) CAA180CTC (7230A>T 7231A>C) CCC181CCG (7234C>G) ACC182_TCC183del (7235_7240delACCTCC) TCC184TCA (7243C>A) TCT185ACT (7244T>A) TCT186GCA (7247T>G 7249T>A) CGG187AGG (7250C>A) ACC188ACT (7255C>T) AGT189AGG (7258T>G) GAG190AGC (7259G>A 7260A>G 7261G>C) GTG192GTT (7267G>T) CGC193GAG (7268C>G 7269G>A 7270C>G) AGC194GAT (7271A>G 7272G>A 7273C>T) AAC196AAT (7279C>T) GCA198AAT (7283G>A 7284C>A 7285A>T) CTG199TTG (7286C>T) GAG200TCA (7289G>T 7290A>C 7291G>A) TAC202TTC (7296A>T) GGA205GGG (7306A>G) GCG206GCC (7309G>C) CTA207CAT (7311T>A 7312A>T) CGC208AAC (7313C>A 7314G>A) ACA209ATC (7317C>T 7318A>C) GCC210TCG (7319G>T 7321C>G) TAT211TTT (7323A>T) GTG212GTC (7327G>C) ACG213ACC (7330G>C) CCT214CCA (7333T>A) CCC215CCA (7336C>A) AGT217AGC (7342T>C) GCT219TCC (7346G>T 7348T>C) AGT221AGC (7354T>C) AAT222CAA (7355A>C 7357T>A) CCA229CCC (7378A>C) GAG231GAA (7384G>A) ACA237ACT (7402A>T) TCT238GGC (7403T>G 7404C>G 7405T>C) GCA239GCT (7408A>T) TTT240TTC (7411T>C) ACC242ACG (7417C>G) CAC243CGC (7419A>G) AGA244AGG (7423A>G) CAA245CAG (7426A>G) CCG246CCT (7429G>T) CTA247CTC (7432A>C) CAT250CAC (7441T>C) CTC251ATT (7442C>A 7444C>T) CGT252CGC (7447T>C) CGG253AAG (7448C>A 7449G>A) AGA254CGA (7451A>C) CAA258CGG (7464A>G 7465A>G) GTT259GTG (7468T>G) TAG260TAA (7471G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43