Version 2.22.2
Genome Detective Platform

NGS Details (ERR138007_norovirus_amplicon_example): Human immunodeficiency virus 1

Assembly

8870 (1 contig(s))
19.1
1490
3175.25 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Human immunodeficiency virus 1 (Taxonomy ID: 11676)
86.8403
82.5363
9
10

Alignment

12819.0 (NT) + 22371.0 (AA) = 35190.0
80.125
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT41891096.6%1281973.4%8808 (99.1%)7668 (86.2%)22/62
Mutations:
47A>G 96C>T 152C>A 161A>G 213G>T 214delG 224G>A 227C>A 228T>A 258C>T 261G>A 278G>A 280delG 305_306delAT 317G>A 369G>A 378C>G 379G>C 380A>T 404A>G 424A>G 426T>C 435A>C 467C>T 471G>C 474A>G 479T>A 485G>T 486T>C 507A>C 510C>A 516C>A 518G>A 525C>T 557A>G 560T>C 562G>A 579G>A 585A>G 586C>T 595G>A 599G>A 607G>A 609A>G 615A>G 632A>G 641C>G 645A>C 656G>A 666A>G 669A>C 670A>G 672A>C 677A>G 678G>A 689A>G 690G>A 692A>T 698C>A 700C>A 704A>G 705_716delCACAGCAATCAG 722C>T 740G>A 746C>T 747A>C 749C>T 755G>A 767T>C 771G>T 773C>T 774A>T 806A>G 809A>G 810G>A 827C>T 830C>T 839G>A 869A>G 875C>T 897C>T 902C>T 944G>C 974T>C 978G>T 980G>A 987G>A 988T>C 989G>A 992T>G 998G>A 1001T>C 1004T>C 1005G>C 1007A>C 1013C>T 1019G>A 1022A>G 1028A>T 1040C>T 1046A>T 1077G>C 1078G>A 1089A>G 1090A>G 1091T>C 1094T>C 1101A>G 1109A>G 1118T>A 1133A>C 1139G>A 1173A>G 1174C>T 1182C>T 1199A>G 1205G>A 1230C>A 1237A>T 1244T>C 1253C>T 1263T>A 1271G>A 1277A>G 1278A>G 1279A>G 1292A>C 1331T>C 1354C>G 1394A>G 1403C>T 1404G>A 1430A>G 1444T>C 1452T>A 1458A>G 1460C>A 1474G>A 1476G>A 1478C>T 1481T>C 1486G>A 1488A>G 1489A>G 1498A>G 1499G>A 1508G>A 1511T>C 1514C>T 1532G>A 1537C>T 1543G>A 1562G>A 1588A>G 1589G>A 1610T>C 1613T>C 1619G>A 1643G>A 1646C>T 1656T>A 1664A>G 1670A>C 1673G>A 1676T>C 1679T>C 1680C>A 1682T>C 1687G>A 1691A>G 1701A>T 1709A>G 1714A>C 1720G>A 1725A>G 1729C>T 1730T>C 1731G>A 1735T>A 1736A>G 1745A>C 1746_1748delACT 1751C>A 1752C>G 1756A>C 1768C>A 1771T>A 1776A>G 1780A>G 1787T>C 1790_1791insCCC 1794A>G 1804G>A 1805G>A 1828C>A 1839A>G 1840G>A 1841A>G 1849G>A 1852A>G 1903A>C 1906G>A 1908G>A 1920G>A 1968G>A 1979C>A 1980A>G 1981G>C 1996C>T 2005T>C 2007A>G 2008A>G 2023A>G 2038A>G 2063C>A 2071T>C 2083C>T 2098C>A 2104C>T 2131A>G 2155A>G 2194A>T 2198G>A 2199T>C 2206T>A 2211C>T 2212A>G 2215G>A 2224G>A 2230G>A 2311A>G 2341G>A 2353C>T 2356C>T 2362A>G 2380A>G 2386C>A 2407A>G 2431T>G 2452C>T 2459G>A 2461A>G 2464C>T 2476T>C 2485T>C 2499T>C 2500A>C 2518G>A 2519A>G 2524A>G 2527T>C 2548G>A 2579A>T 2580G>A 2602G>T 2605T>C 2612A>G 2613A>C 2615C>A 2638T>C 2665A>G 2683G>A 2704G>A 2708C>T 2710G>A 2714C>G 2722G>A 2723T>C 2727G>A 2728G>A 2735C>T 2737T>A 2740C>T 2761G>A 2770T>C 2788T>G 2818A>G 2828G>C 2829T>A 2830G>A 2831C>T 2839A>C 2842A>G 2863C>T 2878G>A 2881G>A 2885T>C 2887G>A 2908C>T 2925G>A 2926G>A 2947A>G 2951A>G 2956A>G 2968A>C 2969G>A 2972A>G 2974A>G 2980A>G 2983A>T 2984G>A 2985A>C 2996C>T 3002C>T 3010A>G 3013C>T 3016A>G 3043A>G 3045T>C 3046G>A 3058A>G 3088G>A 3091G>A 3100C>G 3142G>A 3154A>G 3162G>A 3170G>T 3171G>C 3196A>G 3205G>A 3217A>G 3221A>T 3223C>T 3224A>C 3225C>T 3247A>C 3259A>G 3264A>G 3268G>A 3275C>T 3276A>T 3280G>A 3283A>G 3292A>T 3310T>C 3346T>C 3355T>C 3358C>T 3359T>C 3364G>A 3368T>C 3376C>T 3385G>A 3387A>C 3391A>G 3431G>T 3436C>T 3439G>A 3445T>C 3449T>A 3450T>A 3473A>G 3475T>C 3492T>C 3493T>G 3497A>T 3508C>G 3511A>T 3524A>G 3542T>C 3544T>G 3545C>T 3553G>A 3562G>A 3567T>C 3595A>G 3629C>A 3631A>G 3667G>A 3691T>C 3695G>T 3718A>G 3775A>G 3787A>G 3799C>A 3802A>G 3805T>G 3814G>A 3825G>A 3826T>C 3856C>T 3857C>A 3859G>A 3863C>G 3889C>T 3916A>G 3940C>T 3946T>C 3952A>G 3962C>T 3989G>A 4006T>C 4015C>T 4021A>G 4024T>C 4025A>C 4042T>C 4057G>A 4060G>A 4063A>G 4069A>C 4072T>C 4075T>C 4078T>A 4079T>C 4084A>G 4120T>A 4131G>C 4142G>A 4147T>C 4155G>A 4159C>A 4162C>T 4174G>A 4177A>T 4181A>C 4201C>T 4207T>C 4258T>C 4268G>A 4276T>C 4279G>A 4303A>C 4321C>T 4354G>A 4376G>A 4407A>G 4428C>T 4444T>C 4469A>G 4471T>C 4475C>G 4498C>A 4525A>C 4534T>C 4543C>A 4549A>G 4555G>T 4622A>G 4642G>A 4643A>C 4665C>T 4674T>C 4677G>A 4683G>A 4684G>A 4691T>C 4693G>A 4694G>A 4717A>T 4725C>A 4726C>G 4727T>G 4735G>A 4765G>A 4767G>A 4768A>C 4769T>A 4773A>G 4774G>A 4778G>A 4793T>C 4799T>G 4804A>T 4806A>C 4827T>C 4857A>C 4859A>G 4860A>G 4861A>G 4865A>G 4871C>A 4878G>A 4888A>G 4889A>C 4892A>G 4904A>G 4907T>C 4911C>A 4913G>A 4919C>T 4925C>T 4937C>A 4943T>C 4949A>G 4952G>A 4956T>A 4967C>T 4969T>A 4971G>A 4986G>A 4988A>C 5012A>G 5027C>T 5037G>A 5049A>G 5051A>T 5062T>C 5069A>G 5084T>C 5085A>C 5086C>A 5093G>A 5094A>G 5095C>T 5099G>A 5102T>C 5128A>G 5147C>T 5167G>T 5213A>C 5214T>C 5215T>G 5225G>A 5233G>A 5246G>A 5248A>C 5251T>C 5268C>A 5275G>T 5278A>G 5281C>A 5290A>G 5293T>A 5294C>T 5305G>A 5320delT 5333T>C 5336A>T 5352G>A 5366G>A 5371C>T 5372A>G 5384C>T 5396G>A 5397A>T 5398C>T 5403G>T 5412G>C 5424T>C 5432A>C 5437G>C 5447A>G 5448T>A 5451C>T 5461A>C 5478C>T 5479C>T 5481A>C 5482G>T 5483T>G 5484T>G 5487T>C 5490C>T 5492T>C 5496A>G 5499A>G 5501C>G 5543G>C 5548G>A 5552A>C 5556G>A 5558A>G 5567C>T 5568T>A 5576C>A 5579C>T 5581C>G 5584T>C 5599G>T 5600_5601insGTTAAGC 5602C>T 5611C>T 5612A>C 5614C>A 5615C>A 5617A>T 5619A>G 5620C>T 5621C>T 5623A>G 5624T>C 5626G>A 5630C>G 5631A>C 5636T>C 5644G>A 5653A>C 5662G>A 5677T>A 5679C>T 5684T>C 5686A>T 5687T>A 5688C>T 5704A>C 5706A>G 5707T>G 5712A>G 5725G>A 5727C>T 5734A>T 5735T>A 5737G>A 5739T>A 5743C>A 5747T>G 5748A>C 5781A>G 5784A>G 5787A>T 5788A>G 5789T>C 5791T>G 5792C>A 5793A>G 5795C>A 5797C>T 5799T>G 5801T>C 5802G>A 5804A>C 5805G>A 5806A>C 5808G>T 5813_5815delTGG 5817G>A 5818A>G 5825A>C 5826C>T 5827C>T 5828A>T 5830G>A 5831C>T 5836T>G 5841T>C 5842G>A 5845G>A 5848G>A 5856G>A 5861A>G 5869A>C 5872G>A 5878C>T 5908G>A 5920C>T 5929T>C 5948G>T 5956T>A 5958C>A 5964T>C 5974T>C 5980C>T 5989C>T 6004C>T 6010C>T 6025A>T 6026T>C 6030T>A 6037G>A 6045A>G 6046T>G 6052C>T 6059A>G 6065G>A 6079G>A 6086G>A 6087A>C 6088G>A 6130A>G 6133A>G 6153G>C 6158A>G 6160G>T 6163C>T 6165C>G 6167G>A 6169T>C 6170T>A 6172G>T 6172_6173insGCC 6174A>T 6175G>C 6180A>G 6181T>C 6184T>C 6188A>G 6189C>A 6192A>C 6195G>T 6197A>G 6198G>C 6199T>C 6201G>T 6203G>A 6204G>A 6205G>T 6206A>G 6207G>A 6208A>C 6210T>C 6211G>T 6212A>C 6214A>G 6216T>A 6220G>A 6221A>G 6223A>T 6224G>C 6225G>C 6229_6230insGCA 6233A>C 6241C>T 6252T>C 6253C>A 6255G>C 6257A>G 6260A>G 6261G>A 6262C>A 6270G>A 6275G>C 6276T>A 6279A>T 6285A>T 6287T>C 6289T>G 6293T>C 6314A>G 6318C>A 6322A>C 6323G>A 6325T>C 6328T>G 6331_6332insGAC 6333C>A 6336C>G 6337C>A 6339G>C 6340C>A 6343T>C 6345A>G 6346G>A 6347T>C 6349G>A 6351C>T 6354G>A 6359A>G 6361C>T 6368G>A 6369T>C 6382C>T 6397C>T 6399T>G 6400T>G 6403G>T 6427C>T 6430G>A 6438T>A 6451A>G 6458A>G 6460T>G 6463G>A 6465C>A 6466G>T 6471A>C 6472T>A 6475A>G 6481A>G 6482C>T 6487T>C 6489C>A 6490A>G 6499C>T 6525G>A 6526G>A 6532A>G 6538A>C 6545C>T 6548C>T 6562T>C 6573A>G 6578G>A 6586T>C 6593G>C 6594T>A 6595C>A 6599T>A 6602A>T 6604G>A 6607C>T 6613T>A 6628A>G 6631G>C 6634G>T 6637C>T 6638A>G 6639C>A 6647G>C 6649A>G 6691C>A 6692C>T 6693G>C 6695A>T 6697C>A 6698_6703delCAGAGA 6712G>A 6713A>C 6717C>T 6722G>T 6723T>A 6729T>C 6734A>G 6739_6740insATA 6743A>G 6745T>C 6748G>C 6752C>A 6754A>G 6767A>G 6773A>G 6776G>A 6779A>C 6786A>G 6787T>G 6793T>G 6797A>G 6798A>C 6800C>A 6803A>G 6806G>A 6807C>A 6808T>G 6809A>G 6810G>C 6811C>A 6814A>G 6818A>G 6820A>G 6821G>T 6822A>C 6823A>T 6824C>T 6826A>T 6829T>C 6830_6832delGGA 6833A>C 6834A>C 6839A>G 6840A>C 6849T>A 6850C>A 6856G>C 6857C>T 6858A>C 6876C>T 6884G>A 6885T>C 6888C>G 6892C>T 6894G>A 6905G>A 6906G>T 6907A>G 6910G>A 6929T>A 6932A>G 6933C>A 6934A>T 6935C>G 6947A>G 6948G>A 6949T>C 6952T>A 6953T>A 6954G>A 6955G>A 6958T>C 6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT 6989A>G 6994T>A 6996A>G 6998G>T 6999G>T 7000A>C 7002G>A 7005A>G 7009A>T 7015C>T 7024C>T 7025A>C 7040A>G 7042A>G 7055A>G 7060A>G 7064A>C 7065A>G 7079C>A 7080C>A 7087C>T 7088A>G 7089G>C 7090T>A 7094C>A 7095A>C 7099T>C 7101G>C 7102A>C 7106T>A 7107C>A 7108A>C 7123G>T 7132A>G 7148A>C 7149A>T 7150T>G 7152G>A 7153C>T 7156C>T 7158A>C 7160G>A 7162_7164delGTC 7165C>T 7183A>G 7190G>A 7197G>A 7198G>A 7238A>G 7250T>C 7276G>A 7280A>C 7281G>A 7289C>A 7299A>G 7313A>C 7322T>C 7348A>T 7366A>G 7369C>G 7375G>A 7411T>A 7420G>A 7428A>G 7433T>C 7450G>A 7471A>G 7489C>T 7492G>A 7508A>G 7549G>A 7553A>C 7561T>C 7579T>C 7589G>A 7590C>A 7597T>C 7603T>C 7604G>T 7627G>T 7630A>G 7631C>G 7640A>G 7641A>G 7642T>G 7643C>A 7647C>T 7666C>A 7668G>A 7672A>G 7673A>G 7677A>G 7685A>T 7689G>A 7690C>A 7691T>G 7692T>A 7697C>T 7700T>A 7701C>G 7702C>G 7714A>C 7720A>G 7729A>G 7753G>A 7755A>C 7759A>G 7762T>C 7775T>C 7790A>G 7796A>T 7799A>C 7801T>A 7820T>A 7847G>A 7852T>C 7868G>A 7873A>G 7885G>A 7898C>A 7906T>C 7912A>T 7915A>G 7918G>A 7930C>T 7931C>A 7938C>G 7947G>A 7969A>C 7977A>G 7988A>C 7989G>A 7992A>G 7995G>A 8006A>G 8008T>G 8009C>A 8016T>C 8023A>T 8025C>T 8029G>A 8032A>T 8036A>G 8037T>C 8047T>C 8055G>A 8076A>G 8079G>A 8092A>C 8093C>A 8095C>A 8098G>A 8103T>C 8105A>G 8119A>C 8120C>A 8121T>G 8122T>G 8123C>G 8124T>G 8126G>C 8127G>T 8128A>G 8129C>A 8131C>G 8146C>T 8156T>C 8157G>T 8159T>G 8168C>A 8169T>C 8180A>G 8200T>C 8204G>A 8215C>T 8227C>A 8243G>T 8254G>A 8265T>C 8266A>T 8267G>T 8269A>G 8273G>A 8279T>G 8292G>T 8294C>A 8330A>G 8331T>C 8336C>T 8342G>A 8370G>A 8372G>A 8373A>G 8385A>G 8388G>A 8400A>C 8409G>A 8411T>C 8412G>C 8413A>C 8414G>T 8426T>G 8427A>G 8440C>T 8441A>G 8446G>A 8451C>T 8453G>A 8458A>G 8461A>G 8462T>G 8465A>G 8471C>T 8477T>C 8486A>T 8487G>A 8488C>G 8494C>A 8495C>T 8499G>C 8503C>A 8504T>C 8506G>T 8507T>G 8516A>G 8531G>A 8534G>C 8537G>A 8540G>A 8543T>C 8554C>G 8582T>C 8585C>T 8590C>G 8603T>C 8606C>T 8640C>T 8646C>T 8652C>A 8654A>G 8656G>A 8666T>G 8682A>G 8713A>G 8739G>A 8757T>A 8759T>G 8762A>G 8770A>T 8789G>C 8795T>G 8796A>G 8799A>G 8805G>A 8814A>G 8827C>A 8829A>T 8835T>C 8844G>A 8851T>A 8852G>A 8858G>A 8864T>G 8867C>T 8868C>G 8869C>A 8870G>A 8873G>C 8875G>A 8883T>C 8885A>G 8886G>A 8892A>G 8893G>A 8901A>G 8907C>T 8909A>G
CDS
11436100%924792.1%1431 (99.6%)1287 (89.6%)1/5/0/01
Protein mutations:
E12K (369G>A) R15A (378C>G 379G>C 380A>T) K30R (424A>G) I34L (435A>C) V46L (471G>C) N47D (474A>G) Q59K (510C>A) L61I (516C>A 518G>A) R76K (562G>A) V82I (579G>A) T84V (585A>G 586C>T) C87Y (595G>A) R91K (607G>A) I92V (609A>G) I94V (615A>G) D102E (641C>G) I104L (645A>C) S111G (666A>G) K112R (669A>C 670A>G) K113Q (672A>C) A115T (678G>A) A119T (690G>A 692A>T) D121E (698C>A) T122K (700C>A) H124_Q127del (705_716delCACAGCAATCAG) I138L (747A>C 749C>T) A146S (771G>T 773C>T) I147L (774A>T) V159I (810G>A) E203D (944G>C) V215L (978G>T 980G>A) V218T (987G>A 988T>C 989G>A) H219Q (992T>G) A224P (1005G>C 1007A>C) M228I (1019G>A) G248Q (1077G>C 1078G>A) N252G (1089A>G 1090A>G 1091T>C) I256V (1101A>G) T280V (1173A>G 1174C>T) Y301F (1237A>T) S310T (1263T>A) N315G (1278A>G 1279A>G) E319D (1292A>C) A340G (1354C>G) G357S (1404G>A) V370A (1444T>C) S373T (1452T>A) T375A (1458A>G 1460C>A) R380K (1474G>A) G381S (1476G>A 1478C>T) R384K (1486G>A) N385G (1488A>G 1489A>G) K388R (1498A>G 1499G>A) T401I (1537C>T) R403K (1543G>A) K418R (1588A>G 1589G>A) D437N (1643G>A) L441Q (1656T>A) K444E (1664A>G) E447K (1673G>A) F448L (1676T>C) S449H (1679T>C 1680C>A) S450P (1682T>C) T453A (1691A>G) N456I (1701A>T) T459A (1709A>G) R460S (1714A>C) Q464R (1725A>G) W466Q (1730T>C 1731G>A) R468G (1736A>G) N471del (1745A>C 1746_1748delACT) S472P (1746_1748delACT) P473S (1751C>A 1752C>G) D479E (1771T>A) Q481R (1776A>G) S485P (1787T>C) S485_F486insS (1790_1791insCCC) F486L (1790_1791insCCC) N487S (1794A>G) V491I (1805G>A) K502R (1839A>G 1840G>A) I503V (1841A>G) E523D (1903A>C) M524I (1906G>A) S525N (1908G>A) R529K (1920G>A) R545K (1968G>A) Q549S (1979C>A 1980A>G 1981G>C) K558R (2007A>G 2008A>G) L577M (2063C>A) V622T (2198G>A 2199T>C) T626M (2211C>T 2212A>G) E709K (2459G>A 2461A>G) I722T (2499T>C 2500A>C) I729V (2519A>G) S749Y (2579A>T 2580G>A) E756D (2602G>T) K760A (2612A>G 2613A>C) Q761K (2615C>A) Q794E (2714C>G) R798K (2727G>A 2728G>A) V832Q (2828G>C 2829T>A 2830G>A) E835D (2839A>C) R864K (2925G>A 2926G>A) T873A (2951A>G) E878D (2968A>C) V879I (2969G>A) I880V (2972A>G 2974A>G) E884T (2984G>A 2985A>C) V904A (3045T>C 3046G>A) R943K (3162G>A) G946S (3170G>T 3171G>C) T963S (3221A>T 3223C>T) T964L (3224A>C 3225C>T) K977R (3264A>G) Q981L (3275C>T 3276A>T) E986D (3292A>T) K1018T (3387A>C) A1033S (3431G>T) L1039K (3449T>A 3450T>A) N1047D (3473A>G 3475T>C) V1053A (3492T>C 3493T>G) T1055S (3497A>T) D1058E (3508C>G) T1064A (3524A>G) Y1070Q (3542T>C 3544T>G) L1078S (3567T>C) Q1099K (3629C>A 3631A>G) A1121S (3695G>T) D1157E (3805T>G) S1164N (3825G>A 3826T>C) L1175I (3857C>A 3859G>A) P1177A (3863C>G) V1219I (3989G>A) I1231L (4025A>C) S1266T (4131G>C) G1270S (4142G>A) R1274K (4155G>A) K1283Q (4181A>C) V1312I (4268G>A) V1348I (4376G>A) K1358R (4407A>G) T1365I (4428C>T) N1379D (4469A>G 4471T>C) L1381V (4475C>G) D1403E (4543C>A) S1430G (4622A>G)
Codon mutations:
GAA12AAA (369G>A) CGA15GCT (378C>G 379G>C 380A>T) CCA23CCG (404A>G) AAA30AGA (424A>G) TTA31CTA (426T>C) ATA34CTA (435A>C) TTC44TTT (467C>T) GTT46CTT (471G>C) AAT47GAT (474A>G) CCT48CCA (479T>A) CTG50CTT (485G>T) TTA51CTA (486T>C) AGA58CGA (507A>C) CAA59AAA (510C>A) CTG61ATA (516C>A 518G>A) CTA64TTA (525C>T) GAA74GAG (557A>G) CTT75CTC (560T>C) AGA76AAA (562G>A) GTA82ATA (579G>A) ACC84GTC (585A>G 586C>T) TGT87TAT (595G>A) GTG88GTA (599G>A) AGG91AAG (607G>A) ATA92GTA (609A>G) ATA94GTA (615A>G) GAA99GAG (632A>G) GAC102GAG (641C>G) ATA104CTA (645A>C) GAG107GAA (656G>A) AGT111GGT (666A>G) AAG112CGG (669A>C 670A>G) AAA113CAA (672A>C) AAA114AAG (677A>G) GCA115ACA (678G>A) GCA118GCG (689A>G) GCA119ACT (690G>A 692A>T) GAC121GAA (698C>A) ACA122AAA (700C>A) GGA123GGG (704A>G) CAC124_CAG127del (705_716delCACAGCAATCAG) AGC129AGT (722C>T) GTG135GTA (740G>A) AAC137AAT (746C>T) ATC138CTT (747A>C 749C>T) GGG140GGA (755G>A) CAT144CAC (767T>C) GCC146TCT (771G>T 773C>T) ATA147TTA (774A>T) AAA157AAG (806A>G) GTA158GTG (809A>G) GTA159ATA (810G>A) TTC164TTT (827C>T) AGC165AGT (830C>T) GTG168GTA (839G>A) GGA178GGG (869A>G) ACC180ACT (875C>T) CTA188TTA (897C>T) AAC189AAT (902C>T) GAG203GAC (944G>C) GAT213GAC (974T>C) GTG215TTA (978G>T 980G>A) GTG218ACA (987G>A 988T>C 989G>A) CAT219CAG (992T>G) GGG221GGA (998G>A) CCT222CCC (1001T>C) ATT223ATC (1004T>C) GCA224CCC (1005G>C 1007A>C) GGC226GGT (1013C>T) ATG228ATA (1019G>A) AGA229AGG (1022A>G) CCA231CCT (1028A>T) GAC235GAT (1040C>T) GCA237GCT (1046A>T) GGA248CAA (1077G>C 1078G>A) AAT252GGC (1089A>G 1090A>G 1091T>C) AAT253AAC (1094T>C) ATC256GTC (1101A>G) GTA258GTG (1109A>G) ATT261ATA (1118T>A) ATA266ATC (1133A>C) CTG268CTA (1139G>A) ACC280GTC (1173A>G 1174C>T) CTG283TTG (1182C>T) GGA288GGG (1199A>G) AAG290AAA (1205G>A) CGG299AGG (1230C>A) TAT301TTT (1237A>T) ACT303ACC (1244T>C) GCC306GCT (1253C>T) TCA310ACA (1263T>A) GAG312GAA (1271G>A) AAA314AAG (1277A>G) AAT315GGT (1278A>G 1279A>G) GAA319GAC (1292A>C) ACT332ACC (1331T>C) GCG340GGG (1354C>G) GTA353GTG (1394A>G) CCC356CCT (1403C>T) GGC357AGC (1404G>A) GAA365GAG (1430A>G) GTA370GCA (1444T>C) TCA373ACA (1452T>A) ACC375GCA (1458A>G 1460C>A) AGA380AAA (1474G>A) GGC381AGT (1476G>A 1478C>T) AAT382AAC (1481T>C) AGG384AAG (1486G>A) AAC385GGC (1488A>G 1489A>G) AAG388AGA (1498A>G 1499G>A) AAG391AAA (1508G>A) TGT392TGC (1511T>C) TTC393TTT (1514C>T) GGG399GGA (1532G>A) ACA401ATA (1537C>T) AGA403AAA (1543G>A) AGG409AGA (1562G>A) AAG418AGA (1588A>G 1589G>A) GAT425GAC (1610T>C) TGT426TGC (1613T>C) GAG428GAA (1619G>A) GAT437AAT (1643G>A) CTG438TTG (1646C>T) CTA441CAA (1656T>A) AAG444GAG (1664A>G) AGG446CGG (1670A>C) GAA447AAA (1673G>A) TTT448CTT (1676T>C) TCT449CAT (1679T>C 1680C>A) TCA450CCA (1682T>C) GAG451GAA (1687G>A) ACC453GCC (1691A>G) AAC456ATC (1701A>T) ACC459GCC (1709A>G) AGA460AGC (1714A>C) GAG462GAA (1720G>A) CAG464CGG (1725A>G) GTC465GTT (1729C>T) TGG466CAG (1730T>C 1731G>A) GGT467GGA (1735T>A) AGA468GGA (1736A>G) AAC471del (1745A>C 1746_1748delACT) TCC472CCC (1746_1748delACT) CCC473AGC (1751C>A 1752C>G) TCA474TCC (1756A>C) GCC478GCA (1768C>A) GAT479GAA (1771T>A) CAA481CGA (1776A>G) GGA482GGG (1780A>G) TCC485CCC (1787T>C) TCC485_TTT486insTCC (1790_1791insCCC) TTT486CTT (1790_1791insCCC) AAC487AGC (1794A>G) CAG490CAA (1804G>A) GTC491ATC (1805G>A) CTC498CTA (1828C>A) AAG502AGA (1839A>G 1840G>A) ATA503GTA (1841A>G) GGG505GGA (1849G>A) CAA506CAG (1852A>G) GAA523GAC (1903A>C) ATG524ATA (1906G>A) AGT525AAT (1908G>A) AGA529AAA (1920G>A) AGA545AAA (1968G>A) CAG549AGC (1979C>A 1980A>G 1981G>C) ATC554ATT (1996C>T) CAT557CAC (2005T>C) AAA558AGG (2007A>G 2008A>G) GTA563GTG (2023A>G) ACA568ACG (2038A>G) CTG577ATG (2063C>A) ACT579ACC (2071T>C) TGC583TGT (2083C>T) CCC588CCA (2098C>A) AGC590AGT (2104C>T) TTA599TTG (2131A>G) AAA607AAG (2155A>G) GCA620GCT (2194A>T) GTA622ACA (2198G>A 2199T>C) ATT624ATA (2206T>A) ACA626ATG (2211C>T 2212A>G) GAG627GAA (2215G>A) AAG630AAA (2224G>A) GGG632GGA (2230G>A) AGA659AGG (2311A>G) AAG669AAA (2341G>A) GAC673GAT (2353C>T) TTC674TTT (2356C>T) GAA676GAG (2362A>G) CCA682CCG (2380A>G) CCC684CCA (2386C>A) AAA691AAG (2407A>G) GGT699GGG (2431T>G) CCC706CCT (2452C>T) GAA709AAG (2459G>A 2461A>G) GAC710GAT (2464C>T) TAT714TAC (2476T>C) TTT717TTC (2485T>C) ATA722ACC (2499T>C 2500A>C) GGG728GGA (2518G>A) ATT729GTT (2519A>G) AGA730AGG (2524A>G) TAT731TAC (2527T>C) CAG738CAA (2548G>A) AGT749TAT (2579A>T 2580G>A) GAG756GAT (2602G>T) CCT757CCC (2605T>C) AAA760GCA (2612A>G 2613A>C) CAA761AAA (2615C>A) TAT768TAC (2638T>C) GGA777GGG (2665A>G) GGG783GGA (2683G>A) GAG790GAA (2704G>A) CTG792TTA (2708C>T 2710G>A) CAA794GAA (2714C>G) CTG796CTA (2722G>A) TTG797CTG (2723T>C) AGG798AAA (2727G>A 2728G>A) CTT801TTA (2735C>T 2737T>A) ACC802ACT (2740C>T) CAG809CAA (2761G>A) CCT812CCC (2770T>C) GGT818GGG (2788T>G) GTA828GTG (2818A>G) GTG832CAA (2828G>C 2829T>A 2830G>A) CTG833TTG (2831C>T) GAA835GAC (2839A>C) AAA836AAG (2842A>G) GAC843GAT (2863C>T) GTG848GTA (2878G>A) GGG849GGA (2881G>A) TTG851CTA (2885T>C 2887G>A) TAC858TAT (2908C>T) AGG864AAA (2925G>A 2926G>A) AGA871AGG (2947A>G) ACC873GCC (2951A>G) AAA874AAG (2956A>G) GAA878GAC (2968A>C) GTA879ATA (2969G>A) ATA880GTG (2972A>G 2974A>G) CTA882CTG (2980A>G) ACA883ACT (2983A>T) GAA884ACA (2984G>A 2985A>C) CTA888TTA (2996C>T) CTG890TTG (3002C>T) GAA892GAG (3010A>G) AAC893AAT (3013C>T) AGA894AGG (3016A>G) GGA903GGG (3043A>G) GTG904GCA (3045T>C 3046G>A) CCA908CCG (3058A>G) AAG918AAA (3088G>A) CAG919CAA (3091G>A) GGC922GGG (3100C>G) CTG936CTA (3142G>A) AAA940AAG (3154A>G) AGA943AAA (3162G>A) GGT946TCT (3170G>T 3171G>C) CAA954CAG (3196A>G) GAG957GAA (3205G>A) AAA961AAG (3217A>G) ACC963TCT (3221A>T 3223C>T) ACA964CTA (3224A>C 3225C>T) GGA971GGC (3247A>C) AAA975AAG (3259A>G) AAA977AGA (3264A>G) CTG978CTA (3268G>A) CAA981TTA (3275C>T 3276A>T) AAG982AAA (3280G>A) GAA983GAG (3283A>G) GAA986GAT (3292A>T) TAT992TAC (3310T>C) GTT1004GTC (3346T>C) CCT1007CCC (3355T>C) CCC1008CCT (3358C>T) TTA1009CTA (3359T>C) GTG1010GTA (3364G>A) TTA1012CTA (3368T>C) TAC1014TAT (3376C>T) GAG1017GAA (3385G>A) AAA1018ACA (3387A>C) GAA1019GAG (3391A>G) GCT1033TCT (3431G>T) AAC1034AAT (3436C>T) AGG1035AGA (3439G>A) ACT1037ACC (3445T>C) TTA1039AAA (3449T>A 3450T>A) AAT1047GAC (3473A>G 3475T>C) GTT1053GCG (3492T>C 3493T>G) ACC1055TCC (3497A>T) GAC1058GAG (3508C>G) ACA1059ACT (3511A>T) ACT1064GCT (3524A>G) TAT1070CAG (3542T>C 3544T>G) CTA1071TTA (3545C>T) TTG1073TTA (3553G>A) TCG1076TCA (3562G>A) TTA1078TCA (3567T>C) CAA1087CAG (3595A>G) CAA1099AAG (3629C>A 3631A>G) CAG1111CAA (3667G>A) TAT1119TAC (3691T>C) GCA1121TCA (3695G>T) GGA1128GGG (3718A>G) CTA1147CTG (3775A>G) GGA1151GGG (3787A>G) GCC1155GCA (3799C>A) CAA1156CAG (3802A>G) GAT1157GAG (3805T>G) GAG1160GAA (3814G>A) AGT1164AAC (3825G>A 3826T>C) AAC1174AAT (3856C>T) CTG1175ATA (3857C>A 3859G>A) CCT1177GCT (3863C>G) GCC1185GCT (3889C>T) GGA1194GGG (3916A>G) GAC1202GAT (3940C>T) AGT1204AGC (3946T>C) GGA1206GGG (3952A>G) CTA1210TTA (3962C>T) GTT1219ATT (3989G>A) GTT1224GTC (4006T>C) GCC1227GCT (4015C>T) GGA1229GGG (4021A>G) TAT1230TAC (4024T>C) ATA1231CTA (4025A>C) ATT1236ATC (4042T>C) GGG1241GGA (4057G>A) CAG1242CAA (4060G>A) GAA1243GAG (4063A>G) GCA1245GCC (4069A>C) TAT1246TAC (4072T>C) TTT1247TTC (4075T>C) CTT1248CTA (4078T>A) TTA1249CTA (4079T>C) AAA1250AAG (4084A>G) ACT1262ACA (4120T>A) AGC1266ACC (4131G>C) GGT1270AGT (4142G>A) GCT1271GCC (4147T>C) AGG1274AAG (4155G>A) GCC1275GCA (4159C>A) GCC1276GCT (4162C>T) GCG1280GCA (4174G>A) GGA1281GGT (4177A>T) AAG1283CAG (4181A>C) CCC1289CCT (4201C>T) AAT1291AAC (4207T>C) ATT1308ATC (4258T>C) GTA1312ATA (4268G>A) GAT1314GAC (4276T>C) CAG1315CAA (4279G>A) GTA1323GTC (4303A>C) ATC1329ATT (4321C>T) GGG1340GGA (4354G>A) GTA1348ATA (4376G>A) AAA1358AGA (4407A>G) ACA1365ATA (4428C>T) TTT1370TTC (4444T>C) AAT1379GAC (4469A>G 4471T>C) CTT1381GTT (4475C>G) CTC1388CTA (4498C>A) GTA1397GTC (4525A>C) GAT1400GAC (4534T>C) GAC1403GAA (4543C>A) AAA1405AAG (4549A>G) GTG1407GTT (4555G>T) AGT1430GGT (4622A>G) TAG1436TAA (4642G>A)
1501100%302787.4%496 (98.8%)422 (84.1%)1/5/0/02
Protein mutations:
E12K (369G>A) R15A (378C>G 379G>C 380A>T) K30R (424A>G) I34L (435A>C) V46L (471G>C) N47D (474A>G) Q59K (510C>A) L61I (516C>A 518G>A) R76K (562G>A) V82I (579G>A) T84V (585A>G 586C>T) C87Y (595G>A) R91K (607G>A) I92V (609A>G) I94V (615A>G) D102E (641C>G) I104L (645A>C) S111G (666A>G) K112R (669A>C 670A>G) K113Q (672A>C) A115T (678G>A) A119T (690G>A 692A>T) D121E (698C>A) T122K (700C>A) H124_Q127del (705_716delCACAGCAATCAG) I138L (747A>C 749C>T) A146S (771G>T 773C>T) I147L (774A>T) V159I (810G>A) E203D (944G>C) V215L (978G>T 980G>A) V218T (987G>A 988T>C 989G>A) H219Q (992T>G) A224P (1005G>C 1007A>C) M228I (1019G>A) G248Q (1077G>C 1078G>A) N252G (1089A>G 1090A>G 1091T>C) I256V (1101A>G) T280V (1173A>G 1174C>T) Y301F (1237A>T) S310T (1263T>A) N315G (1278A>G 1279A>G) E319D (1292A>C) A340G (1354C>G) G357S (1404G>A) V370A (1444T>C) S373T (1452T>A) T375A (1458A>G 1460C>A) R380K (1474G>A) G381S (1476G>A 1478C>T) R384K (1486G>A) N385G (1488A>G 1489A>G) K388R (1498A>G 1499G>A) T401I (1537C>T) R403K (1543G>A) K418R (1588A>G 1589G>A) Y441N (1656T>A) L449I (1680C>A 1682T>C) S451N (1687G>A) T456S (1701A>T) E460A (1714A>C) S462N (1720G>A) R464G (1725A>G) S465F (1729C>T 1730T>C) G466R (1731G>A) V467E (1735T>A 1736A>G) T471del (1746_1748delACT) P473A (1752C>G) Q474P (1756A>C) P478Q (1768C>A) I479K (1771T>A) K481E (1776A>G) E482G (1780A>G) P485_L486insP (1790_1791insCCC) T487A (1794A>G) R490K (1804G>A 1805G>A) S498* (1828C>A)
Codon mutations:
GAA12AAA (369G>A) CGA15GCT (378C>G 379G>C 380A>T) CCA23CCG (404A>G) AAA30AGA (424A>G) TTA31CTA (426T>C) ATA34CTA (435A>C) TTC44TTT (467C>T) GTT46CTT (471G>C) AAT47GAT (474A>G) CCT48CCA (479T>A) CTG50CTT (485G>T) TTA51CTA (486T>C) AGA58CGA (507A>C) CAA59AAA (510C>A) CTG61ATA (516C>A 518G>A) CTA64TTA (525C>T) GAA74GAG (557A>G) CTT75CTC (560T>C) AGA76AAA (562G>A) GTA82ATA (579G>A) ACC84GTC (585A>G 586C>T) TGT87TAT (595G>A) GTG88GTA (599G>A) AGG91AAG (607G>A) ATA92GTA (609A>G) ATA94GTA (615A>G) GAA99GAG (632A>G) GAC102GAG (641C>G) ATA104CTA (645A>C) GAG107GAA (656G>A) AGT111GGT (666A>G) AAG112CGG (669A>C 670A>G) AAA113CAA (672A>C) AAA114AAG (677A>G) GCA115ACA (678G>A) GCA118GCG (689A>G) GCA119ACT (690G>A 692A>T) GAC121GAA (698C>A) ACA122AAA (700C>A) GGA123GGG (704A>G) CAC124_CAG127del (705_716delCACAGCAATCAG) AGC129AGT (722C>T) GTG135GTA (740G>A) AAC137AAT (746C>T) ATC138CTT (747A>C 749C>T) GGG140GGA (755G>A) CAT144CAC (767T>C) GCC146TCT (771G>T 773C>T) ATA147TTA (774A>T) AAA157AAG (806A>G) GTA158GTG (809A>G) GTA159ATA (810G>A) TTC164TTT (827C>T) AGC165AGT (830C>T) GTG168GTA (839G>A) GGA178GGG (869A>G) ACC180ACT (875C>T) CTA188TTA (897C>T) AAC189AAT (902C>T) GAG203GAC (944G>C) GAT213GAC (974T>C) GTG215TTA (978G>T 980G>A) GTG218ACA (987G>A 988T>C 989G>A) CAT219CAG (992T>G) GGG221GGA (998G>A) CCT222CCC (1001T>C) ATT223ATC (1004T>C) GCA224CCC (1005G>C 1007A>C) GGC226GGT (1013C>T) ATG228ATA (1019G>A) AGA229AGG (1022A>G) CCA231CCT (1028A>T) GAC235GAT (1040C>T) GCA237GCT (1046A>T) GGA248CAA (1077G>C 1078G>A) AAT252GGC (1089A>G 1090A>G 1091T>C) AAT253AAC (1094T>C) ATC256GTC (1101A>G) GTA258GTG (1109A>G) ATT261ATA (1118T>A) ATA266ATC (1133A>C) CTG268CTA (1139G>A) ACC280GTC (1173A>G 1174C>T) CTG283TTG (1182C>T) GGA288GGG (1199A>G) AAG290AAA (1205G>A) CGG299AGG (1230C>A) TAT301TTT (1237A>T) ACT303ACC (1244T>C) GCC306GCT (1253C>T) TCA310ACA (1263T>A) GAG312GAA (1271G>A) AAA314AAG (1277A>G) AAT315GGT (1278A>G 1279A>G) GAA319GAC (1292A>C) ACT332ACC (1331T>C) GCG340GGG (1354C>G) GTA353GTG (1394A>G) CCC356CCT (1403C>T) GGC357AGC (1404G>A) GAA365GAG (1430A>G) GTA370GCA (1444T>C) TCA373ACA (1452T>A) ACC375GCA (1458A>G 1460C>A) AGA380AAA (1474G>A) GGC381AGT (1476G>A 1478C>T) AAT382AAC (1481T>C) AGG384AAG (1486G>A) AAC385GGC (1488A>G 1489A>G) AAG388AGA (1498A>G 1499G>A) AAG391AAA (1508G>A) TGT392TGC (1511T>C) TTC393TTT (1514C>T) GGG399GGA (1532G>A) ACA401ATA (1537C>T) AGA403AAA (1543G>A) AGG409AGA (1562G>A) AAG418AGA (1588A>G 1589G>A) GAT425GAC (1610T>C) TGT426TGC (1613T>C) GAG428GAA (1619G>A) AAG436AAA (1643G>A) ATC437ATT (1646C>T) TAC441AAC (1656T>A) GGA443GGG (1664A>G) CCA445CCC (1670A>C) GGG446GGA (1673G>A) AAT447AAC (1676T>C) TTT448TTC (1679T>C) CTT449ATC (1680C>A 1682T>C) AGC451AAC (1687G>A) AGA452AGG (1691A>G) ACA456TCA (1701A>T) CCA458CCG (1709A>G) GAA460GCA (1714A>C) AGC462AAC (1720G>A) AGG464GGG (1725A>G) TCT465TTC (1729C>T 1730T>C) GGG466AGG (1731G>A) GTA467GAG (1735T>A 1736A>G) ACA470ACC (1745A>C) ACT471del (1746_1748delACT) CCC472CCA (1751C>A) CCT473GCT (1752C>G) CAG474CCG (1756A>C) CCG478CAG (1768C>A) ATA479AAA (1771T>A) AAG481GAG (1776A>G) GAA482GGA (1780A>G) TAT484TAC (1787T>C) CCT485_TTA486insCCC (1790_1791insCCC) ACT487GCT (1794A>G) AGG490AAA (1804G>A 1805G>A) TCG498TAG (1828C>A)
1193100%126686.4%193 (100%)162 (83.9%)0/0/0/01
Protein mutations:
R19N (4642G>A 4643A>C) H27Y (4665C>T) Y30H (4674T>C) V31I (4677G>A) G33K (4683G>A 4684G>A) R36K (4693G>A 4694G>A) Y44F (4717A>T) P47R (4725C>A 4726C>G 4727T>G) R50K (4735G>A) G60E (4765G>A) D61T (4767G>A 4768A>C 4769T>A) R63E (4773A>G 4774G>A) H73L (4804A>T) T74P (4806A>C) K91Q (4857A>C 4859A>G) K92G (4860A>G 4861A>G) S95R (4871C>A) V98I (4878G>A) E101G (4888A>G 4889A>C) L109I (4911C>A 4913G>A) D117E (4937C>A) L124I (4956T>A) I128K (4969T>A) V129I (4971G>A) E134N (4986G>A 4988A>C) A151T (5037G>A) T155A (5049A>G 5051A>T) I159T (5062T>C) T167Q (5085A>C 5086C>A) T170V (5094A>G 5095C>T) K181R (5128A>G)
Codon mutations:
CAA12CAG (4622A>G) AGA19AAC (4642G>A 4643A>C) CAC27TAC (4665C>T) TAT30CAT (4674T>C) GTT31ATT (4677G>A) GGG33AAG (4683G>A 4684G>A) GCT35GCC (4691T>C) AGG36AAA (4693G>A 4694G>A) TAT44TTT (4717A>T) CCT47AGG (4725C>A 4726C>G 4727T>G) AGA50AAA (4735G>A) GGG60GAG (4765G>A) GAT61ACA (4767G>A 4768A>C 4769T>A) AGA63GAA (4773A>G 4774G>A) TTG64TTA (4778G>A) TAT69TAC (4793T>C) GGT71GGG (4799T>G) CAT73CTT (4804A>T) ACA74CCA (4806A>C) TTG81CTG (4827T>C) AAA91CAG (4857A>C 4859A>G) AAG92GGG (4860A>G 4861A>G) AGA93AGG (4865A>G) AGC95AGA (4871C>A) GTA98ATA (4878G>A) GAA101GGC (4888A>G 4889A>C) CTA102CTG (4892A>G) CTA106CTG (4904A>G) ATT107ATC (4907T>C) CTG109ATA (4911C>A 4913G>A) TAC111TAT (4919C>T) GAC113GAT (4925C>T) GAC117GAA (4937C>A) GCT119GCC (4943T>C) AGA121AGG (4949A>G) AAG122AAA (4952G>A) TTA124ATA (4956T>A) CAC127CAT (4967C>T) ATA128AAA (4969T>A) GTT129ATT (4971G>A) GAA134AAC (4986G>A 4988A>C) GTA142GTG (5012A>G) TAC147TAT (5027C>T) GCA151ACA (5037G>A) ACA155GCT (5049A>G 5051A>T) ATA159ACA (5062T>C) CCA161CCG (5069A>G) GTT166GTC (5084T>C) ACG167CAG (5085A>C 5086C>A) CTG169CTA (5093G>A) ACA170GTA (5094A>G 5095C>T) GAG171GAA (5099G>A) GAT172GAC (5102T>C) AAG181AGG (5128A>G) CAC187CAT (5147C>T)
197100%68693.1%97 (100%)89 (91.8%)0/0/0/01
Protein mutations:
H15Y (5147C>T) E21D (5167G>T) I37P (5213A>C 5214T>C 5215T>G) G41S (5225G>A) E48N (5246G>A 5248A>C) A55E (5268C>A) V83I (5352G>A) A89V (5371C>T 5372A>G)
Codon mutations:
CAA8CAG (5128A>G) CAC15TAC (5147C>T) GAG21GAT (5167G>T) ATT37CCG (5213A>C 5214T>C 5215T>G) GGC41AGC (5225G>A) GGG43GGA (5233G>A) GAA48AAC (5246G>A 5248A>C) ACT49ACC (5251T>C) GCA55GAA (5268C>A) GTG57GTT (5275G>T) GAA58GAG (5278A>G) GCC59GCA (5281C>A) AGA62AGG (5290A>G) ATT63ATA (5293T>A) CTG64TTG (5294C>T) CTG67CTA (5305G>A) TGT76TGC (5333T>C) CGA77CGT (5336A>T) GTT83ATT (5352G>A) AGG87AGA (5366G>A) GCA89GTG (5371C>T 5372A>G) GCC93GCT (5384C>T) TAG97TAA (5396G>A)
187100%52775.4%87 (100%)62 (71.3%)0/0/0/00
Protein mutations:
P3L (5384C>T) R7N (5396G>A 5397A>T) E9D (5403G>T) K12N (5412G>C) K19T (5432A>C) A21P (5437G>C) N24R (5447A>G 5448T>A) K29Q (5461A>C) Q35Y (5479C>T 5481A>C) V36W (5482G>T 5483T>G 5484T>G) I39T (5492T>C) A42G (5501C>G) R56P (5543G>C) A58T (5548G>A) H59P (5552A>C) N61S (5558A>G) T64I (5567C>T 5568T>A) A67D (5576C>A) S68F (5579C>T) L69V (5581C>G) S70P (5584T>C) T74I (7930C>T 7931C>A) P77A (7938C>G) D80N (7947G>A) *87S (7969A>C)
Codon mutations:
CCA3CTA (5384C>T) AGA7AAT (5396G>A 5397A>T) CTA8TTA (5398C>T) GAG9GAT (5403G>T) AAG12AAC (5412G>C) AGT16AGC (5424T>C) AAA19ACA (5432A>C) GCT21CCT (5437G>C) AAT24AGA (5447A>G 5448T>A) TGC25TGT (5451C>T) AAG29CAG (5461A>C) TGC34TGT (5478C>T) CAA35TAC (5479C>T 5481A>C) GTT36TGG (5482G>T 5483T>G 5484T>G) TGT37TGC (5487T>C) TTC38TTT (5490C>T) ATA39ACA (5492T>C) ACA40ACG (5496A>G) AAA41AAG (5499A>G) GCC42GGC (5501C>G) CGA56CCA (5543G>C) GCT58ACT (5548G>A) CAT59CCT (5552A>C) CAG60CAA (5556G>A) AAC61AGC (5558A>G) ACT64ATA (5567C>T 5568T>A) GCT67GAT (5576C>A) TCT68TTT (5579C>T) CTA69GTA (5581C>G) TCA70CCA (5584T>C) ACC74ATA (7930C>T 7931C>A) CCC77GCC (7938C>G) GAC80AAC (7947G>A) TAG87TCG (7969A>C)
1117100%61074.9%117 (100%)87 (74.4%)0/0/0/01
Protein mutations:
E10Q (5543G>C) I13L (5552A>C) R14K (5556G>A) T15A (5558A>G) L18Y (5567C>T 5568T>A) L21I (5576C>A) P28Y (7930C>T 7931C>A) N30K (7938C>G) E47A (7988A>C 7989G>A) H53R (8006A>G) S54E (8008T>G 8009C>A) I59F (8023A>T 8025C>T) G61S (8029G>A) T62S (8032A>T) Y63C (8036A>G 8037T>C) S67P (8047T>C) T82H (8092A>C 8093C>A) L83I (8095C>A) D84N (8098G>A) N86S (8105A>G) T91Q (8119A>C 8120C>A 8121T>G) S92G (8122T>G 8123C>G 8124T>G) G93A (8126G>C 8127G>T) T94E (8128A>G 8129C>A) Q95E (8131C>G) P100S (8146C>T) L103S (8156T>C 8157G>T) V104G (8159T>G) P107H (8168C>A 8169T>C) E111G (8180A>G)
Codon mutations:
GAA10CAA (5543G>C) GAG11GAA (5548G>A) ATC13CTC (5552A>C) AGA14AAA (5556G>A) ACA15GCA (5558A>G) CTC18TAC (5567C>T 5568T>A) CTT21ATT (5576C>A) CTC22TTG (5579C>T 5581C>G) TAT23TAC (5584T>C) CCT28TAT (7930C>T 7931C>A) AAC30AAG (7938C>G) GGG33GGA (7947G>A) AGA41CGA (7969A>C) AGA43AGG (7977A>G) GAG47GCA (7988A>C 7989G>A) AGA48AGG (7992A>G) CAG49CAA (7995G>A) CAT53CGT (8006A>G) TCG54GAG (8008T>G 8009C>A) AGT56AGC (8016T>C) ATC59TTT (8023A>T 8025C>T) GGC61AGC (8029G>A) ACT62TCT (8032A>T) TAT63TGC (8036A>G 8037T>C) TCT67CCT (8047T>C) GAG69GAA (8055G>A) CCA76CCG (8076A>G) CCG77CCA (8079G>A) ACT82CAT (8092A>C 8093C>A) CTT83ATT (8095C>A) GAT84AAT (8098G>A) TGT85TGC (8103T>C) AAC86AGC (8105A>G) ACT91CAG (8119A>C 8120C>A 8121T>G) TCT92GGG (8122T>G 8123C>G 8124T>G) GGG93GCT (8126G>C 8127G>T) ACG94GAG (8128A>G 8129C>A) CAG95GAG (8131C>G) CCT100TCT (8146C>T) TTG103TCT (8156T>C 8157G>T) GTG104GGG (8159T>G) CCT107CAC (8168C>A 8169T>C) GAG111GGG (8180A>G)
183100%31458.1%82 (98.8%)46 (55.4%)0/1/0/01
Protein mutations:
Q2S (5611C>T 5612A>C) P3N (5614C>A 5615C>A) I4L (5617A>T 5619A>G) P5L (5620C>T 5621C>T) I6A (5623A>G 5624T>C) V7I (5626G>A) A8G (5630C>G 5631A>C) V10A (5636T>C) V13I (5644G>A) I16L (5653A>C) A19T (5662G>A) S24T (5677T>A 5679C>T) V26A (5684T>C) I27Y (5686A>T 5687T>A 5688C>T) I33L (5704A>C 5706A>G) L34V (5707T>G) D40N (5725G>A 5727C>T) I43Y (5734A>T 5735T>A) D44K (5737G>A 5739T>A) L46I (5743C>A) I47S (5747T>G 5748A>C) E60D (5787A>T) I61A (5788A>G 5789T>C) S62E (5791T>G 5792C>A 5793A>G) A63E (5795C>A) V65A (5801T>C 5802G>A) E66A (5804A>C 5805G>A) M67L (5806A>C 5808G>T) V69del (5813_5815delTGG) M71V (5818A>G) H73P (5825A>C 5826C>T) H74F (5827C>T 5828A>T) A75I (5830G>A 5831C>T) W77G (5836T>G) V79I (5842G>A) D80N (5845G>A) D81N (5848G>A)
Codon mutations:
CAA2TCA (5611C>T 5612A>C) CCT3AAT (5614C>A 5615C>A) ATA4TTG (5617A>T 5619A>G) CCA5TTA (5620C>T 5621C>T) ATA6GCA (5623A>G 5624T>C) GTA7ATA (5626G>A) GCA8GGC (5630C>G 5631A>C) GTA10GCA (5636T>C) GTA13ATA (5644G>A) ATA16CTA (5653A>C) GCA19ACA (5662G>A) TCC24ACT (5677T>A 5679C>T) GTA26GCA (5684T>C) ATC27TAT (5686A>T 5687T>A 5688C>T) ATA33CTG (5704A>C 5706A>G) TTA34GTA (5707T>G) AGA35AGG (5712A>G) GAC40AAT (5725G>A 5727C>T) ATT43TAT (5734A>T 5735T>A) GAT44AAA (5737G>A 5739T>A) CTA46ATA (5743C>A) ATA47AGC (5747T>G 5748A>C) GAA58GAG (5781A>G) GGA59GGG (5784A>G) GAA60GAT (5787A>T) ATA61GCA (5788A>G 5789T>C) TCA62GAG (5791T>G 5792C>A 5793A>G) GCA63GAA (5795C>A) CTT64TTG (5797C>T 5799T>G) GTG65GCA (5801T>C 5802G>A) GAG66GCA (5804A>C 5805G>A) ATG67CTT (5806A>C 5808G>T) GTG69del (5813_5815delTGG) GAG70GAA (5813_5815delTGG 5817G>A) ATG71GTG (5818A>G) CAC73CCT (5825A>C 5826C>T) CAT74TTT (5827C>T 5828A>T) GCT75ATT (5830G>A 5831C>T) TGG77GGG (5836T>G) GAT78GAC (5841T>C) GTT79ATT (5842G>A) GAT80AAT (5845G>A) GAT81AAT (5848G>A) TAG83TAA (5856G>A)
1857100%461776.9%843 (97.9%)632 (73.4%)4/14/0/01
Protein mutations:
K4R (5781A>G) E5G (5784A>G) K6M (5787A>T 5788A>G) Y7Q (5789T>C 5791T>G) Q8R (5792C>A 5793A>G) H9N (5795C>A 5797C>T) L10W (5799T>G) W11Q (5801T>C 5802G>A) R12H (5804A>C 5805G>A 5806A>C) W13L (5808G>T) W15del (5813_5815delTGG) R16K (5817G>A 5818A>G) T19L (5825A>C 5826C>T 5827C>T) M20L (5828A>T 5830G>A) L21F (5831C>T) M24T (5841T>C 5842G>A) M26I (5848G>A) S29N (5856G>A) T31A (5861A>G) K33N (5869A>C) A60S (5948G>T) D62E (5956T>A) T63K (5958C>A) V65A (5964T>C) V87E (6030T>A) N92R (6045A>G 6046T>G) K97E (6059A>G) D99N (6065G>A) E106T (6086G>A 6087A>C 6088G>A) S128T (6153G>C) K130D (6158A>G 6160G>T) T132S (6165C>G) D133N (6167G>A 6169T>C) L134I (6170T>A 6172G>T) L134_K135insA (6172_6173insGCC) K135I (6174A>T 6175G>C) D137G (6180A>G 6181T>C) T140D (6188A>G 6189C>A) N141T (6192A>C) S142I (6195G>T) S143A (6197A>G 6198G>C 6199T>C) S144I (6201G>T) G145N (6203G>A 6204G>A 6205G>T) R146D (6206A>G 6207G>A 6208A>C) M147T (6210T>C 6211G>T) I148L (6212A>C 6214A>G) M149K (6216T>A) K151D (6221A>G 6223A>T) G152P (6224G>C 6225G>C) E153_I154insA (6229_6230insGCA) K155Q (6233A>C) I161T (6252T>C 6253C>A) S162T (6255G>C) T163A (6257A>G) S164E (6260A>G 6261G>A 6262C>A) G167D (6270G>A) V169Q (6275G>C 6276T>A) Q170L (6279A>T) E172V (6285A>T) Y173Q (6287T>C 6289T>G) F175L (6293T>C) I182V (6314A>G) P183Q (6318C>A) D185N (6323G>A 6325T>C) N186K (6328T>G) D187_T188insD (6331_6332insGAC) T188N (6333C>A) T189R (6336C>G 6337C>A) S190T (6339G>C 6340C>A) K192R (6345A>G 6346G>A) T194I (6351C>T) S195N (6354G>A) N197D (6359A>G 6361C>T) V200T (6368G>A 6369T>C) F210W (6399T>G 6400T>G) E211D (6403G>T) F223Y (6438T>A) N230E (6458A>G 6460T>G) T232N (6465C>A 6466G>T) N234T (6471A>C 6472T>A) P238S (6482C>T) T240K (6489C>A 6490A>G) R252K (6525G>A 6526G>A) E268G (6573A>G) V270I (6578G>A) V275Q (6593G>C 6594T>A 6595C>A) F277I (6599T>A) T278S (6602A>T 6604G>A) Q287H (6631G>C) T290E (6638A>G 6639C>A) E293Q (6647G>C 6649A>G) R308S (6692C>T 6693G>C) I309L (6695A>T 6697C>A) Q310_R311del (6698_6703delCAGAGA) A316V (6717C>T) V318Y (6722G>T 6723T>A) I320T (6729T>C) K322E (6734A>G) I323_G324insI (6739_6740insATA) N325D (6743A>G 6745T>C) M326I (6748G>C) Q328K (6752C>A 6754A>G) I333V (6767A>G) R335G (6773A>G) A336T (6776G>A) K337Q (6779A>C) N339R (6786A>G 6787T>G) K343A (6797A>G 6798A>C) Q344K (6800C>A) I345V (6803A>G) A346K (6806G>A 6807C>A 6808T>G) S347A (6809A>G 6810G>C 6811C>A) R350G (6818A>G 6820A>G) E351S (6821G>T 6822A>C 6823A>T) Q352Y (6824C>T 6826A>T) G354del (6830_6832delGGA) N355P (6833A>C 6834A>C) K357A (6839A>G 6840A>C) I360K (6849T>A 6850C>A) K362N (6856G>C) Q363S (6857C>T 6858A>C) P369L (6876C>T) V372T (6884G>A 6885T>C) T373R (6888C>G) S375N (6894G>A) G379M (6905G>A 6906G>T 6907A>G) S387T (6929T>A) T388D (6932A>G 6933C>A 6934A>T) Q389E (6935C>G) S393D (6947A>G 6948G>A 6949T>C) W395K (6953T>A 6954G>A 6955G>A) S398_N406del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) N407D (6989A>G) E409G (6996A>G) G410F (6998G>T 6999G>T 7000A>C) S411N (7002G>A) D412G (7005A>G) I424V (7040A>G 7042A>G) K429E (7055A>G) K432R (7064A>C 7065A>G) P437N (7079C>A 7080C>A) S440A (7088A>G 7089G>C 7090T>A) Q442T (7094C>A 7095A>C) R444T (7101G>C 7102A>C) S446N (7106T>A 7107C>A 7108A>C) N460L (7148A>C 7149A>T 7150T>G) S461N (7152G>A 7153C>T) N463T (7158A>C) E464del (7160G>A 7162_7164delGTC) S465N (7162_7164delGTC 7165C>T) D474N (7190G>A) R476K (7197G>A 7198G>A) K490E (7238A>G) R504Q (7280A>C 7281G>A) Q507K (7289C>A) K510R (7299A>G) I515L (7313A>C) M535I (7375G>A) N553S (7428A>G) I580V (7508A>G) I595L (7553A>C) A607N (7589G>A 7590C>A) A612S (7604G>T) Q621E (7631C>G) N624G (7640A>G 7641A>G 7642T>G) H625N (7643C>A) T626M (7647C>T) D632E (7666C>A) R633K (7668G>A) I635V (7673A>G) N636S (7677A>G) T639S (7685A>T) S640K (7689G>A 7690C>A) L641E (7691T>G 7692T>A) H643Y (7697C>T) S644R (7700T>A 7701C>G 7702C>G) E648D (7714A>C) E662A (7755A>C) N674D (7790A>G) T676S (7796A>T) N677Q (7799A>C 7801T>A) L684I (7820T>A) V693I (7847G>A) A700T (7868G>A) Q710K (7898C>A) L721I (7931C>A) T723S (7938C>G) G726E (7947G>A) E736G (7977A>G) R740Q (7988A>C 7989G>A) D741G (7992A>G) R742K (7995G>A) I746V (8006A>G 8008T>G) V749A (8016T>C) S752F (8025C>T) I756A (8036A>G 8037T>C) S762N (8055G>A) H769R (8076A>G) R770H (8079G>A) L774F (8092A>C) L775I (8093C>A 8095C>A) V778A (8103T>C) T779A (8105A>G) E783D (8119A>C) L784R (8120C>A 8121T>G 8122T>G) L785G (8123C>G 8124T>G) G786L (8126G>C 8127G>T 8128A>G) W796L (8156T>C 8157G>T) W797G (8159T>G) L800T (8168C>A 8169T>C) S804G (8180A>G) V812I (8204G>A) G825W (8243G>T) V832A (8265T>C 8266A>T) V833L (8267G>T 8269A>G) G835R (8273G>A) C837G (8279T>G) R841L (8292G>T) H842N (8294C>A) I854A (8330A>G 8331T>C)
Codon mutations:
AAG4AGG (5781A>G) GAG5GGG (5784A>G) AAA6ATG (5787A>T 5788A>G) TAT7CAG (5789T>C 5791T>G) CAG8AGG (5792C>A 5793A>G) CAC9AAT (5795C>A 5797C>T) TTG10TGG (5799T>G) TGG11CAG (5801T>C 5802G>A) AGA12CAC (5804A>C 5805G>A 5806A>C) TGG13TTG (5808G>T) TGG15del (5813_5815delTGG) AGA16AAG (5817G>A 5818A>G) ACC19CTT (5825A>C 5826C>T 5827C>T) ATG20TTA (5828A>T 5830G>A) CTC21TTC (5831C>T) CTT22CTG (5836T>G) ATG24ACA (5841T>C 5842G>A) TTG25TTA (5845G>A) ATG26ATA (5848G>A) AGT29AAT (5856G>A) ACA31GCA (5861A>G) AAA33AAC (5869A>C) TTG34TTA (5872G>A) GTC36GTT (5878C>T) AAG46AAA (5908G>A) ACC50ACT (5920C>T) TTT53TTC (5929T>C) GCA60TCA (5948G>T) GAT62GAA (5956T>A) ACA63AAA (5958C>A) GTA65GCA (5964T>C) GTT68GTC (5974T>C) GCC70GCT (5980C>T) GCC73GCT (5989C>T) GAC78GAT (6004C>T) AAC80AAT (6010C>T) GTA85GTT (6025A>T) TTG86CTG (6026T>C) GTA87GAA (6030T>A) GTG89GTA (6037G>A) AAT92AGG (6045A>G 6046T>G) AAC94AAT (6052C>T) AAA97GAA (6059A>G) GAC99AAC (6065G>A) CAG103CAA (6079G>A) GAG106ACA (6086G>A 6087A>C 6088G>A) GTA120GTG (6130A>G) AAA121AAG (6133A>G) AGT128ACT (6153G>C) AAG130GAT (6158A>G 6160G>T) TGC131TGT (6163C>T) ACT132AGT (6165C>G) GAT133AAC (6167G>A 6169T>C) TTG134ATT (6170T>A 6172G>T) TTG134_AAG135insGCC (6172_6173insGCC) AAG135ATC (6174A>T 6175G>C) GAT137GGC (6180A>G 6181T>C) ACT138ACC (6184T>C) ACC140GAC (6188A>G 6189C>A) AAT141ACT (6192A>C) AGT142ATT (6195G>T) AGT143GCC (6197A>G 6198G>C 6199T>C) AGC144ATC (6201G>T) GGG145AAT (6203G>A 6204G>A 6205G>T) AGA146GAC (6206A>G 6207G>A 6208A>C) ATG147ACT (6210T>C 6211G>T) ATA148CTG (6212A>C 6214A>G) ATG149AAG (6216T>A) GAG150GAA (6220G>A) AAA151GAT (6221A>G 6223A>T) GGA152CCA (6224G>C 6225G>C) GAG153_ATA154insGCA (6229_6230insGCA) AAA155CAA (6233A>C) TGC157TGT (6241C>T) ATC161ACA (6252T>C 6253C>A) AGC162ACC (6255G>C) ACA163GCA (6257A>G) AGC164GAA (6260A>G 6261G>A 6262C>A) GGT167GAT (6270G>A) GTG169CAG (6275G>C 6276T>A) CAG170CTG (6279A>T) GAA172GTA (6285A>T) TAT173CAG (6287T>C 6289T>G) TTT175CTT (6293T>C) ATA182GTA (6314A>G) CCA183CAA (6318C>A) ATA184ATC (6322A>C) GAT185AAC (6323G>A 6325T>C) AAT186AAG (6328T>G) GAT187_ACT188insGAC (6331_6332insGAC) ACT188AAT (6333C>A) ACC189AGA (6336C>G 6337C>A) AGC190ACA (6339G>C 6340C>A) TAT191TAC (6343T>C) AAG192AGA (6345A>G 6346G>A) TTG193CTA (6347T>C 6349G>A) ACA194ATA (6351C>T) AGT195AAT (6354G>A) AAC197GAT (6359A>G 6361C>T) GTC200ACC (6368G>A 6369T>C) GCC204GCT (6382C>T) TCC209TCT (6397C>T) TTT210TGG (6399T>G 6400T>G) GAG211GAT (6403G>T) GCC219GCT (6427C>T) CCG220CCA (6430G>A) TTT223TAT (6438T>A) AAA227AAG (6451A>G) AAT230GAG (6458A>G 6460T>G) AAG231AAA (6463G>A) ACG232AAT (6465C>A 6466G>T) AAT234ACA (6471A>C 6472T>A) GGA235GGG (6475A>G) GGA237GGG (6481A>G) CCA238TCA (6482C>T) TGT239TGC (6487T>C) ACA240AAG (6489C>A 6490A>G) AGC243AGT (6499C>T) AGG252AAA (6525G>A 6526G>A) GTA254GTG (6532A>G) TCA256TCC (6538A>C) CTG259TTG (6545C>T) CTG260TTG (6548C>T) AGT264AGC (6562T>C) GAA268GGA (6573A>G) GTA270ATA (6578G>A) ATT272ATC (6586T>C) GTC275CAA (6593G>C 6594T>A 6595C>A) TTC277ATC (6599T>A) ACG278TCA (6602A>T 6604G>A) GAC279GAT (6607C>T) GCT281GCA (6613T>A) GTA286GTG (6628A>G) CAG287CAC (6631G>C) CTG288CTT (6634G>T) AAC289AAT (6637C>T) ACA290GAA (6638A>G 6639C>A) GAA293CAG (6647G>C 6649A>G) ATC307ATA (6691C>A) CGT308TCT (6692C>T 6693G>C) ATC309TTA (6695A>T 6697C>A) CAG310_AGA311del (6698_6703delCAGAGA) GGG314GGA (6712G>A) AGA315CGA (6713A>C) GCA316GTA (6717C>T) GTT318TAT (6722G>T 6723T>A) ATA320ACA (6729T>C) AAA322GAA (6734A>G) ATA323_GGA324insATA (6739_6740insATA) AAT325GAC (6743A>G 6745T>C) ATG326ATC (6748G>C) CAA328AAG (6752C>A 6754A>G) ATT333GTT (6767A>G) AGA335GGA (6773A>G) GCA336ACA (6776G>A) AAA337CAA (6779A>C) AAT339AGG (6786A>G 6787T>G) ACT341ACG (6793T>G) AAA343GCA (6797A>G 6798A>C) CAG344AAG (6800C>A) ATA345GTA (6803A>G) GCT346AAG (6806G>A 6807C>A 6808T>G) AGC347GCA (6809A>G 6810G>C 6811C>A) AAA348AAG (6814A>G) AGA350GGG (6818A>G 6820A>G) GAA351TCT (6821G>T 6822A>C 6823A>T) CAA352TAT (6824C>T 6826A>T) TTT353TTC (6829T>C) GGA354del (6830_6832delGGA) AAT355CCT (6833A>C 6834A>C) AAA357GCA (6839A>G 6840A>C) ATC360AAA (6849T>A 6850C>A) AAG362AAC (6856G>C) CAA363TCA (6857C>T 6858A>C) CCA369CTA (6876C>T) GTA372ACA (6884G>A 6885T>C) ACG373AGG (6888C>G) CAC374CAT (6892C>T) AGT375AAT (6894G>A) GGA379ATG (6905G>A 6906G>T 6907A>G) GGG380GGA (6910G>A) TCA387ACA (6929T>A) ACA388GAT (6932A>G 6933C>A 6934A>T) CAA389GAA (6935C>G) AGT393GAC (6947A>G 6948G>A 6949T>C) ACT394ACA (6952T>A) TGG395AAA (6953T>A 6954G>A 6955G>A) TTT396TTC (6958T>C) AGT398_AAT406del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) AAC407GAC (6989A>G) ACT408ACA (6994T>A) GAA409GGA (6996A>G) GGA410TTC (6998G>T 6999G>T 7000A>C) AGT411AAT (7002G>A) GAC412GGC (7005A>G) ACA413ACT (7009A>T) ACC415ACT (7015C>T) TGC418TGT (7024C>T) AGA419CGA (7025A>C) ATA424GTG (7040A>G 7042A>G) AAA429GAA (7055A>G) GTA430GTG (7060A>G) AAA432CGA (7064A>C 7065A>G) CCT437AAT (7079C>A 7080C>A) ATC439ATT (7087C>T) AGT440GCA (7088A>G 7089G>C 7090T>A) CAA442ACA (7094C>A 7095A>C) ATT443ATC (7099T>C) AGA444ACC (7101G>C 7102A>C) TCA446AAC (7106T>A 7107C>A 7108A>C) GGG451GGT (7123G>T) TTA454TTG (7132A>G) AAT460CTG (7148A>C 7149A>T 7150T>G) AGC461AAT (7152G>A 7153C>T) AAC462AAT (7156C>T) AAT463ACT (7158A>C) GAG464del (7160G>A 7162_7164delGTC) TCC465AAT (7162_7164delGTC 7165C>T) GGA471GGG (7183A>G) GAT474AAT (7190G>A) AGG476AAA (7197G>A 7198G>A) AAA490GAA (7238A>G) TTA494CTA (7250T>C) AAG502AAA (7276G>A) AGA504CAA (7280A>C 7281G>A) CAG507AAG (7289C>A) AAA510AGA (7299A>G) ATA515CTA (7313A>C) TTG518CTG (7322T>C) GCA526GCT (7348A>T) GCA532GCG (7366A>G) GCC533GCG (7369C>G) ATG535ATA (7375G>A) GGT547GGA (7411T>A) CAG550CAA (7420G>A) AAC553AGC (7428A>G) TTG555CTG (7433T>C) GAG560GAA (7450G>A) CAA567CAG (7471A>G) ATC573ATT (7489C>T) AAG574AAA (7492G>A) ATC580GTC (7508A>G) CTG593CTA (7549G>A) ATT595CTT (7553A>C) GGT597GGC (7561T>C) ATT603ATC (7579T>C) GCT607AAT (7589G>A 7590C>A) CCT609CCC (7597T>C) AAT611AAC (7603T>C) GCT612TCT (7604G>T) CTG619CTT (7627G>T) GAA620GAG (7630A>G) CAG621GAG (7631C>G) AAT624GGG (7640A>G 7641A>G 7642T>G) CAC625AAC (7643C>A) ACG626ATG (7647C>T) GAC632GAA (7666C>A) AGA633AAA (7668G>A) GAA634GAG (7672A>G) ATT635GTT (7673A>G) AAC636AGC (7677A>G) ACA639TCA (7685A>T) AGC640AAA (7689G>A 7690C>A) TTA641GAA (7691T>G 7692T>A) CAC643TAC (7697C>T) TCC644AGG (7700T>A 7701C>G 7702C>G) GAA648GAC (7714A>C) CAA650CAG (7720A>G) CAA653CAG (7729A>G) TTG661TTA (7753G>A) GAA662GCA (7755A>C) TTA663TTG (7759A>G) GAT664GAC (7762T>C) TTG669CTG (7775T>C) AAC674GAC (7790A>G) ACA676TCA (7796A>T) AAT677CAA (7799A>C 7801T>A) TTA684ATA (7820T>A) GTA693ATA (7847G>A) GGT694GGC (7852T>C) GCT700ACT (7868G>A) GTA701GTG (7873A>G) GTG705GTA (7885G>A) CAG710AAG (7898C>A) TAT712TAC (7906T>C) CCA714CCT (7912A>T) TTA715TTG (7915A>G) TCG716TCA (7918G>A) CAC720CAT (7930C>T) CTC721ATC (7931C>A) ACC723AGC (7938C>G) GGA726GAA (7947G>A) ATA733ATC (7969A>C) GAA736GGA (7977A>G) AGA740CAA (7988A>C 7989G>A) GAC741GGC (7992A>G) AGA742AAA (7995G>A) ATT746GTG (8006A>G 8008T>G) CGA747AGA (8009C>A) GTG749GCG (8016T>C) GGA751GGT (8023A>T) TCC752TTC (8025C>T) TTG753TTA (8029G>A) GCA754GCT (8032A>T) ATC756GCC (8036A>G 8037T>C) GAT759GAC (8047T>C) AGC762AAC (8055G>A) CAC769CGC (8076A>G) CGC770CAC (8079G>A) TTA774TTC (8092A>C) CTC775ATA (8093C>A 8095C>A) TTG776TTA (8098G>A) GTA778GCA (8103T>C) ACG779GCG (8105A>G) GAA783GAC (8119A>C) CTT784AGG (8120C>A 8121T>G 8122T>G) CTG785GGG (8123C>G 8124T>G) GGA786CTG (8126G>C 8127G>T 8128A>G) CGC787AGG (8129C>A 8131C>G) GCC792GCT (8146C>T) TGG796CTG (8156T>C 8157G>T) TGG797GGG (8159T>G) CTA800ACA (8168C>A 8169T>C) AGT804GGT (8180A>G) AGT810AGC (8200T>C) GTT812ATT (8204G>A) CTC815CTT (8215C>T) GCC819GCA (8227C>A) GGG825TGG (8243G>T) AGG828AGA (8254G>A) GTA832GCT (8265T>C 8266A>T) GTA833TTG (8267G>T 8269A>G) GGA835AGA (8273G>A) TGT837GGT (8279T>G) CGC841CTC (8292G>T) CAC842AAC (8294C>A) ATT854GCT (8330A>G 8331T>C) CTA856TTA (8336C>T)
1190100%97577.3%180 (94.7%)143 (75.3%)0/10/0/01
Protein mutations:
K19R (7433T>C) F21L (7428A>G) E40D (7369C>G) K56R (7322T>C) I59S (7313A>C) F64L (7299A>G) C67F (7289C>A) L70C (7280A>C 7281G>A) N80S (7250T>C) F84S (7238A>G) L98F (7197G>A) S100F (7190G>A) D109del (7162_7164delGTC) S110L (7160G>A) L111V (7156C>T 7158A>C) L113F (7150T>G 7152G>A) L114R (7148A>C 7149A>T) S122R (7123G>T) D127E (7108A>C) E128L (7106T>A 7107C>A) H129Q (7102A>C) L130V (7099T>C 7101G>C) C132V (7094C>A 7095A>C) L134A (7087C>T 7088A>G 7089G>C) G137L (7079C>A 7080C>A) F142R (7064A>C 7065A>G) F145S (7055A>G) I150T (7040A>G) L155R (7024C>T 7025A>C) S162P (7005A>G) P164N (6998G>T 6999G>T) S165P (6994T>A 6996A>G) L167S (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT 6989A>G) F168_L176del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) Q179F (6952T>A 6953T>A 6954G>A) L181S (6947A>G 6948G>A) C185S (6934A>T 6935C>G) V186S (6932A>G 6933C>A) E187V (6929T>A)
Codon mutations:
AGT6AGC (7471A>G) GCC13GCT (7450G>A) AAA19AGA (7433T>C) TTC21CTC (7428A>G) TGC23TGT (7420G>A) ATA26ATT (7411T>A) GTC38GTT (7375G>A) GAG40GAC (7369C>G) GCT41GCC (7366A>G) CCT47CCA (7348A>T) AAA56AGA (7322T>C) ATT59AGT (7313A>C) TTT64CTT (7299A>G) TGC67TTC (7289C>A) CTT70TGT (7280A>C 7281G>A) CTC71CTT (7276G>A) AAT80AGT (7250T>C) TTT84TCT (7238A>G) TCC97TCT (7198G>A) CTC98TTC (7197G>A) TCT100TTT (7190G>A) CCT102CCC (7183A>G) TCG108TCA (7165C>T) GAC109del (7162_7164delGTC) TCA110TTA (7160G>A) TTG111GTA (7156C>T 7158A>C) TTG112TTA (7153C>T) CTA113TTC (7150T>G 7152G>A) TTA114AGA (7148A>C 7149A>T) GTT119GTC (7132A>G) AGC122AGA (7123G>T) GAT127GAG (7108A>C) GAA128TTA (7106T>A 7107C>A) CAT129CAG (7102A>C) CTA130GTG (7099T>C 7101G>C) TGT132GTT (7094C>A 7095A>C) CCA133CCT (7090T>A) CTG134GCA (7087C>T 7088A>G 7089G>C) GGG137TTG (7079C>A 7080C>A) TTT142CGT (7064A>C 7065A>G) CCT143CCC (7060A>G) TTC145TCC (7055A>G) TTT149TTC (7042A>G) ATA150ACA (7040A>G) CTG155CGA (7024C>T 7025A>C) AGG158AGA (7015C>T) ATT160ATA (7009A>T) TCA162CCA (7005A>G) CTT163TTG (7000A>C 7002G>A) CCT164AAT (6998G>T 6999G>T) TCA165CCT (6994T>A 6996A>G) TTA167TCA (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT 6989A>G) TTT168_CTA176del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) TTA177TTG (6958T>C) AAC178AAT (6955G>A) CAA179TTT (6952T>A 6953T>A 6954G>A) GTA180GTG (6949T>C) CTA181TCA (6947A>G 6948G>A) TGT185TCA (6934A>T 6935C>G) GTT186TCT (6932A>G 6933C>A) GAA187GTA (6929T>A)
119091.8%110279.9%190 (100%)142 (74.7%)0/0/0/00
Protein mutations:
V10I (8370G>A 8372G>A) I11V (8373A>G) T15A (8385A>G) V16I (8388G>A) M20L (8400A>C) A23T (8409G>A 8411T>C) E24P (8412G>C 8413A>C 8414G>T) D28E (8426T>G) R29G (8427A>G) A33V (8440C>T 8441A>G) R35Q (8446G>A) K39R (8458A>G) H40R (8461A>G 8462T>G) A49R (8487G>A 8488C>G) T51N (8494C>A 8495C>T) A53P (8499G>C) A54D (8503C>A 8504T>C) C55L (8506G>T 8507T>G) E64D (8534G>C) T71R (8554C>G) A83G (8590C>G) H102Y (8646C>T) Q104K (8652C>A 8654A>G) R105K (8656G>A) D108E (8666T>G) I114V (8682A>G) *124W (8713A>G) V133I (8739G>A) F139M (8757T>A 8759T>G) Y143F (8770A>T) E149D (8789G>C) D151E (8795T>G) K152E (8796A>G) I153V (8799A>G) E155K (8805G>A) K158E (8814A>G) T162N (8827C>A) S163C (8829A>T) V168M (8844G>A) L170Q (8851T>A 8852G>A) D174E (8864T>G) P176E (8868C>G 8869C>A 8870G>A) E177D (8873G>C) R178K (8875G>A) E182K (8886G>A) R184E (8892A>G 8893G>A) S187G (8901A>G)
Codon mutations:
GTG10ATA (8370G>A 8372G>A) ATT11GTT (8373A>G) ACT15GCT (8385A>G) GTA16ATA (8388G>A) ATG20CTG (8400A>C) GCT23ACC (8409G>A 8411T>C) GAG24CCT (8412G>C 8413A>C 8414G>T) GAT28GAG (8426T>G) AGG29GGG (8427A>G) GCA33GTG (8440C>T 8441A>G) CGA35CAA (8446G>A) CTG37TTA (8451C>T 8453G>A) AAA39AGA (8458A>G) CAT40CGG (8461A>G 8462T>G) GGA41GGG (8465A>G) ATC43ATT (8471C>T) AGT45AGC (8477T>C) ACA48ACT (8486A>T) GCA49AGA (8487G>A 8488C>G) ACC51AAT (8494C>A 8495C>T) GCT53CCT (8499G>C) GCT54GAC (8503C>A 8504T>C) TGT55TTG (8506G>T 8507T>G) CTA58CTG (8516A>G) GAG63GAA (8531G>A) GAG64GAC (8534G>C) GAG65GAA (8537G>A) GTG66GTA (8540G>A) GGT67GGC (8543T>C) ACA71AGA (8554C>G) ACT80ACC (8582T>C) TAC81TAT (8585C>T) GCA83GGA (8590C>G) CTT87CTC (8603T>C) AGC88AGT (8606C>T) CTA100TTA (8640C>T) CAC102TAC (8646C>T) CAA104AAG (8652C>A 8654A>G) AGA105AAA (8656G>A) GAT108GAG (8666T>G) ATC114GTC (8682A>G) TAG124TGG (8713A>G) GTC133ATC (8739G>A) TTT139ATG (8757T>A 8759T>G) GGA140GGG (8762A>G) TAC143TTC (8770A>T) GAG149GAC (8789G>C) GAT151GAG (8795T>G) AAG152GAG (8796A>G) ATA153GTA (8799A>G) GAG155AAG (8805G>A) AAA158GAA (8814A>G) ACC162AAC (8827C>A) AGC163TGC (8829A>T) TTA165CTA (8835T>C) GTG168ATG (8844G>A) CTG170CAA (8851T>A 8852G>A) GGG172GGA (8858G>A) GAT174GAG (8864T>G) GAC175GAT (8867C>T) CCG176GAA (8868C>G 8869C>A 8870G>A) GAG177GAC (8873G>C) AGA178AAA (8875G>A) TTA181CTG (8883T>C 8885A>G) GAG182AAG (8886G>A) AGG184GAG (8892A>G 8893G>A) AGC187GGC (8901A>G) CTA189TTG (8907C>T 8909A>G)
Proteins
11436100%924792.1%1431 (99.6%)1287 (89.6%)1/5/0/01
Protein mutations:
E12K (369G>A) R15A (378C>G 379G>C 380A>T) K30R (424A>G) I34L (435A>C) V46L (471G>C) N47D (474A>G) Q59K (510C>A) L61I (516C>A 518G>A) R76K (562G>A) V82I (579G>A) T84V (585A>G 586C>T) C87Y (595G>A) R91K (607G>A) I92V (609A>G) I94V (615A>G) D102E (641C>G) I104L (645A>C) S111G (666A>G) K112R (669A>C 670A>G) K113Q (672A>C) A115T (678G>A) A119T (690G>A 692A>T) D121E (698C>A) T122K (700C>A) H124_Q127del (705_716delCACAGCAATCAG) I138L (747A>C 749C>T) A146S (771G>T 773C>T) I147L (774A>T) V159I (810G>A) E203D (944G>C) V215L (978G>T 980G>A) V218T (987G>A 988T>C 989G>A) H219Q (992T>G) A224P (1005G>C 1007A>C) M228I (1019G>A) G248Q (1077G>C 1078G>A) N252G (1089A>G 1090A>G 1091T>C) I256V (1101A>G) T280V (1173A>G 1174C>T) Y301F (1237A>T) S310T (1263T>A) N315G (1278A>G 1279A>G) E319D (1292A>C) A340G (1354C>G) G357S (1404G>A) V370A (1444T>C) S373T (1452T>A) T375A (1458A>G 1460C>A) R380K (1474G>A) G381S (1476G>A 1478C>T) R384K (1486G>A) N385G (1488A>G 1489A>G) K388R (1498A>G 1499G>A) T401I (1537C>T) R403K (1543G>A) K418R (1588A>G 1589G>A) D437N (1643G>A) L441Q (1656T>A) K444E (1664A>G) E447K (1673G>A) F448L (1676T>C) S449H (1679T>C 1680C>A) S450P (1682T>C) T453A (1691A>G) N456I (1701A>T) T459A (1709A>G) R460S (1714A>C) Q464R (1725A>G) W466Q (1730T>C 1731G>A) R468G (1736A>G) N471del (1745A>C 1746_1748delACT) S472P (1746_1748delACT) P473S (1751C>A 1752C>G) D479E (1771T>A) Q481R (1776A>G) S485P (1787T>C) S485_F486insS (1790_1791insCCC) F486L (1790_1791insCCC) N487S (1794A>G) V491I (1805G>A) K502R (1839A>G 1840G>A) I503V (1841A>G) E523D (1903A>C) M524I (1906G>A) S525N (1908G>A) R529K (1920G>A) R545K (1968G>A) Q549S (1979C>A 1980A>G 1981G>C) K558R (2007A>G 2008A>G) L577M (2063C>A) V622T (2198G>A 2199T>C) T626M (2211C>T 2212A>G) E709K (2459G>A 2461A>G) I722T (2499T>C 2500A>C) I729V (2519A>G) S749Y (2579A>T 2580G>A) E756D (2602G>T) K760A (2612A>G 2613A>C) Q761K (2615C>A) Q794E (2714C>G) R798K (2727G>A 2728G>A) V832Q (2828G>C 2829T>A 2830G>A) E835D (2839A>C) R864K (2925G>A 2926G>A) T873A (2951A>G) E878D (2968A>C) V879I (2969G>A) I880V (2972A>G 2974A>G) E884T (2984G>A 2985A>C) V904A (3045T>C 3046G>A) R943K (3162G>A) G946S (3170G>T 3171G>C) T963S (3221A>T 3223C>T) T964L (3224A>C 3225C>T) K977R (3264A>G) Q981L (3275C>T 3276A>T) E986D (3292A>T) K1018T (3387A>C) A1033S (3431G>T) L1039K (3449T>A 3450T>A) N1047D (3473A>G 3475T>C) V1053A (3492T>C 3493T>G) T1055S (3497A>T) D1058E (3508C>G) T1064A (3524A>G) Y1070Q (3542T>C 3544T>G) L1078S (3567T>C) Q1099K (3629C>A 3631A>G) A1121S (3695G>T) D1157E (3805T>G) S1164N (3825G>A 3826T>C) L1175I (3857C>A 3859G>A) P1177A (3863C>G) V1219I (3989G>A) I1231L (4025A>C) S1266T (4131G>C) G1270S (4142G>A) R1274K (4155G>A) K1283Q (4181A>C) V1312I (4268G>A) V1348I (4376G>A) K1358R (4407A>G) T1365I (4428C>T) N1379D (4469A>G 4471T>C) L1381V (4475C>G) D1403E (4543C>A) S1430G (4622A>G)
Codon mutations:
GAA12AAA (369G>A) CGA15GCT (378C>G 379G>C 380A>T) CCA23CCG (404A>G) AAA30AGA (424A>G) TTA31CTA (426T>C) ATA34CTA (435A>C) TTC44TTT (467C>T) GTT46CTT (471G>C) AAT47GAT (474A>G) CCT48CCA (479T>A) CTG50CTT (485G>T) TTA51CTA (486T>C) AGA58CGA (507A>C) CAA59AAA (510C>A) CTG61ATA (516C>A 518G>A) CTA64TTA (525C>T) GAA74GAG (557A>G) CTT75CTC (560T>C) AGA76AAA (562G>A) GTA82ATA (579G>A) ACC84GTC (585A>G 586C>T) TGT87TAT (595G>A) GTG88GTA (599G>A) AGG91AAG (607G>A) ATA92GTA (609A>G) ATA94GTA (615A>G) GAA99GAG (632A>G) GAC102GAG (641C>G) ATA104CTA (645A>C) GAG107GAA (656G>A) AGT111GGT (666A>G) AAG112CGG (669A>C 670A>G) AAA113CAA (672A>C) AAA114AAG (677A>G) GCA115ACA (678G>A) GCA118GCG (689A>G) GCA119ACT (690G>A 692A>T) GAC121GAA (698C>A) ACA122AAA (700C>A) GGA123GGG (704A>G) CAC124_CAG127del (705_716delCACAGCAATCAG) AGC129AGT (722C>T) GTG135GTA (740G>A) AAC137AAT (746C>T) ATC138CTT (747A>C 749C>T) GGG140GGA (755G>A) CAT144CAC (767T>C) GCC146TCT (771G>T 773C>T) ATA147TTA (774A>T) AAA157AAG (806A>G) GTA158GTG (809A>G) GTA159ATA (810G>A) TTC164TTT (827C>T) AGC165AGT (830C>T) GTG168GTA (839G>A) GGA178GGG (869A>G) ACC180ACT (875C>T) CTA188TTA (897C>T) AAC189AAT (902C>T) GAG203GAC (944G>C) GAT213GAC (974T>C) GTG215TTA (978G>T 980G>A) GTG218ACA (987G>A 988T>C 989G>A) CAT219CAG (992T>G) GGG221GGA (998G>A) CCT222CCC (1001T>C) ATT223ATC (1004T>C) GCA224CCC (1005G>C 1007A>C) GGC226GGT (1013C>T) ATG228ATA (1019G>A) AGA229AGG (1022A>G) CCA231CCT (1028A>T) GAC235GAT (1040C>T) GCA237GCT (1046A>T) GGA248CAA (1077G>C 1078G>A) AAT252GGC (1089A>G 1090A>G 1091T>C) AAT253AAC (1094T>C) ATC256GTC (1101A>G) GTA258GTG (1109A>G) ATT261ATA (1118T>A) ATA266ATC (1133A>C) CTG268CTA (1139G>A) ACC280GTC (1173A>G 1174C>T) CTG283TTG (1182C>T) GGA288GGG (1199A>G) AAG290AAA (1205G>A) CGG299AGG (1230C>A) TAT301TTT (1237A>T) ACT303ACC (1244T>C) GCC306GCT (1253C>T) TCA310ACA (1263T>A) GAG312GAA (1271G>A) AAA314AAG (1277A>G) AAT315GGT (1278A>G 1279A>G) GAA319GAC (1292A>C) ACT332ACC (1331T>C) GCG340GGG (1354C>G) GTA353GTG (1394A>G) CCC356CCT (1403C>T) GGC357AGC (1404G>A) GAA365GAG (1430A>G) GTA370GCA (1444T>C) TCA373ACA (1452T>A) ACC375GCA (1458A>G 1460C>A) AGA380AAA (1474G>A) GGC381AGT (1476G>A 1478C>T) AAT382AAC (1481T>C) AGG384AAG (1486G>A) AAC385GGC (1488A>G 1489A>G) AAG388AGA (1498A>G 1499G>A) AAG391AAA (1508G>A) TGT392TGC (1511T>C) TTC393TTT (1514C>T) GGG399GGA (1532G>A) ACA401ATA (1537C>T) AGA403AAA (1543G>A) AGG409AGA (1562G>A) AAG418AGA (1588A>G 1589G>A) GAT425GAC (1610T>C) TGT426TGC (1613T>C) GAG428GAA (1619G>A) GAT437AAT (1643G>A) CTG438TTG (1646C>T) CTA441CAA (1656T>A) AAG444GAG (1664A>G) AGG446CGG (1670A>C) GAA447AAA (1673G>A) TTT448CTT (1676T>C) TCT449CAT (1679T>C 1680C>A) TCA450CCA (1682T>C) GAG451GAA (1687G>A) ACC453GCC (1691A>G) AAC456ATC (1701A>T) ACC459GCC (1709A>G) AGA460AGC (1714A>C) GAG462GAA (1720G>A) CAG464CGG (1725A>G) GTC465GTT (1729C>T) TGG466CAG (1730T>C 1731G>A) GGT467GGA (1735T>A) AGA468GGA (1736A>G) AAC471del (1745A>C 1746_1748delACT) TCC472CCC (1746_1748delACT) CCC473AGC (1751C>A 1752C>G) TCA474TCC (1756A>C) GCC478GCA (1768C>A) GAT479GAA (1771T>A) CAA481CGA (1776A>G) GGA482GGG (1780A>G) TCC485CCC (1787T>C) TCC485_TTT486insTCC (1790_1791insCCC) TTT486CTT (1790_1791insCCC) AAC487AGC (1794A>G) CAG490CAA (1804G>A) GTC491ATC (1805G>A) CTC498CTA (1828C>A) AAG502AGA (1839A>G 1840G>A) ATA503GTA (1841A>G) GGG505GGA (1849G>A) CAA506CAG (1852A>G) GAA523GAC (1903A>C) ATG524ATA (1906G>A) AGT525AAT (1908G>A) AGA529AAA (1920G>A) AGA545AAA (1968G>A) CAG549AGC (1979C>A 1980A>G 1981G>C) ATC554ATT (1996C>T) CAT557CAC (2005T>C) AAA558AGG (2007A>G 2008A>G) GTA563GTG (2023A>G) ACA568ACG (2038A>G) CTG577ATG (2063C>A) ACT579ACC (2071T>C) TGC583TGT (2083C>T) CCC588CCA (2098C>A) AGC590AGT (2104C>T) TTA599TTG (2131A>G) AAA607AAG (2155A>G) GCA620GCT (2194A>T) GTA622ACA (2198G>A 2199T>C) ATT624ATA (2206T>A) ACA626ATG (2211C>T 2212A>G) GAG627GAA (2215G>A) AAG630AAA (2224G>A) GGG632GGA (2230G>A) AGA659AGG (2311A>G) AAG669AAA (2341G>A) GAC673GAT (2353C>T) TTC674TTT (2356C>T) GAA676GAG (2362A>G) CCA682CCG (2380A>G) CCC684CCA (2386C>A) AAA691AAG (2407A>G) GGT699GGG (2431T>G) CCC706CCT (2452C>T) GAA709AAG (2459G>A 2461A>G) GAC710GAT (2464C>T) TAT714TAC (2476T>C) TTT717TTC (2485T>C) ATA722ACC (2499T>C 2500A>C) GGG728GGA (2518G>A) ATT729GTT (2519A>G) AGA730AGG (2524A>G) TAT731TAC (2527T>C) CAG738CAA (2548G>A) AGT749TAT (2579A>T 2580G>A) GAG756GAT (2602G>T) CCT757CCC (2605T>C) AAA760GCA (2612A>G 2613A>C) CAA761AAA (2615C>A) TAT768TAC (2638T>C) GGA777GGG (2665A>G) GGG783GGA (2683G>A) GAG790GAA (2704G>A) CTG792TTA (2708C>T 2710G>A) CAA794GAA (2714C>G) CTG796CTA (2722G>A) TTG797CTG (2723T>C) AGG798AAA (2727G>A 2728G>A) CTT801TTA (2735C>T 2737T>A) ACC802ACT (2740C>T) CAG809CAA (2761G>A) CCT812CCC (2770T>C) GGT818GGG (2788T>G) GTA828GTG (2818A>G) GTG832CAA (2828G>C 2829T>A 2830G>A) CTG833TTG (2831C>T) GAA835GAC (2839A>C) AAA836AAG (2842A>G) GAC843GAT (2863C>T) GTG848GTA (2878G>A) GGG849GGA (2881G>A) TTG851CTA (2885T>C 2887G>A) TAC858TAT (2908C>T) AGG864AAA (2925G>A 2926G>A) AGA871AGG (2947A>G) ACC873GCC (2951A>G) AAA874AAG (2956A>G) GAA878GAC (2968A>C) GTA879ATA (2969G>A) ATA880GTG (2972A>G 2974A>G) CTA882CTG (2980A>G) ACA883ACT (2983A>T) GAA884ACA (2984G>A 2985A>C) CTA888TTA (2996C>T) CTG890TTG (3002C>T) GAA892GAG (3010A>G) AAC893AAT (3013C>T) AGA894AGG (3016A>G) GGA903GGG (3043A>G) GTG904GCA (3045T>C 3046G>A) CCA908CCG (3058A>G) AAG918AAA (3088G>A) CAG919CAA (3091G>A) GGC922GGG (3100C>G) CTG936CTA (3142G>A) AAA940AAG (3154A>G) AGA943AAA (3162G>A) GGT946TCT (3170G>T 3171G>C) CAA954CAG (3196A>G) GAG957GAA (3205G>A) AAA961AAG (3217A>G) ACC963TCT (3221A>T 3223C>T) ACA964CTA (3224A>C 3225C>T) GGA971GGC (3247A>C) AAA975AAG (3259A>G) AAA977AGA (3264A>G) CTG978CTA (3268G>A) CAA981TTA (3275C>T 3276A>T) AAG982AAA (3280G>A) GAA983GAG (3283A>G) GAA986GAT (3292A>T) TAT992TAC (3310T>C) GTT1004GTC (3346T>C) CCT1007CCC (3355T>C) CCC1008CCT (3358C>T) TTA1009CTA (3359T>C) GTG1010GTA (3364G>A) TTA1012CTA (3368T>C) TAC1014TAT (3376C>T) GAG1017GAA (3385G>A) AAA1018ACA (3387A>C) GAA1019GAG (3391A>G) GCT1033TCT (3431G>T) AAC1034AAT (3436C>T) AGG1035AGA (3439G>A) ACT1037ACC (3445T>C) TTA1039AAA (3449T>A 3450T>A) AAT1047GAC (3473A>G 3475T>C) GTT1053GCG (3492T>C 3493T>G) ACC1055TCC (3497A>T) GAC1058GAG (3508C>G) ACA1059ACT (3511A>T) ACT1064GCT (3524A>G) TAT1070CAG (3542T>C 3544T>G) CTA1071TTA (3545C>T) TTG1073TTA (3553G>A) TCG1076TCA (3562G>A) TTA1078TCA (3567T>C) CAA1087CAG (3595A>G) CAA1099AAG (3629C>A 3631A>G) CAG1111CAA (3667G>A) TAT1119TAC (3691T>C) GCA1121TCA (3695G>T) GGA1128GGG (3718A>G) CTA1147CTG (3775A>G) GGA1151GGG (3787A>G) GCC1155GCA (3799C>A) CAA1156CAG (3802A>G) GAT1157GAG (3805T>G) GAG1160GAA (3814G>A) AGT1164AAC (3825G>A 3826T>C) AAC1174AAT (3856C>T) CTG1175ATA (3857C>A 3859G>A) CCT1177GCT (3863C>G) GCC1185GCT (3889C>T) GGA1194GGG (3916A>G) GAC1202GAT (3940C>T) AGT1204AGC (3946T>C) GGA1206GGG (3952A>G) CTA1210TTA (3962C>T) GTT1219ATT (3989G>A) GTT1224GTC (4006T>C) GCC1227GCT (4015C>T) GGA1229GGG (4021A>G) TAT1230TAC (4024T>C) ATA1231CTA (4025A>C) ATT1236ATC (4042T>C) GGG1241GGA (4057G>A) CAG1242CAA (4060G>A) GAA1243GAG (4063A>G) GCA1245GCC (4069A>C) TAT1246TAC (4072T>C) TTT1247TTC (4075T>C) CTT1248CTA (4078T>A) TTA1249CTA (4079T>C) AAA1250AAG (4084A>G) ACT1262ACA (4120T>A) AGC1266ACC (4131G>C) GGT1270AGT (4142G>A) GCT1271GCC (4147T>C) AGG1274AAG (4155G>A) GCC1275GCA (4159C>A) GCC1276GCT (4162C>T) GCG1280GCA (4174G>A) GGA1281GGT (4177A>T) AAG1283CAG (4181A>C) CCC1289CCT (4201C>T) AAT1291AAC (4207T>C) ATT1308ATC (4258T>C) GTA1312ATA (4268G>A) GAT1314GAC (4276T>C) CAG1315CAA (4279G>A) GTA1323GTC (4303A>C) ATC1329ATT (4321C>T) GGG1340GGA (4354G>A) GTA1348ATA (4376G>A) AAA1358AGA (4407A>G) ACA1365ATA (4428C>T) TTT1370TTC (4444T>C) AAT1379GAC (4469A>G 4471T>C) CTT1381GTT (4475C>G) CTC1388CTA (4498C>A) GTA1397GTC (4525A>C) GAT1400GAC (4534T>C) GAC1403GAA (4543C>A) AAA1405AAG (4549A>G) GTG1407GTT (4555G>T) AGT1430GGT (4622A>G) TAG1436TAA (4642G>A)
156100%22058.5%55 (96.5%)34 (59.6%)1/1/0/00
Protein mutations:
D5N (1643G>A) L9Q (1656T>A) K12E (1664A>G) E15K (1673G>A) F16L (1676T>C) S17H (1679T>C 1680C>A) S18P (1682T>C) T21A (1691A>G) N24I (1701A>T) T27A (1709A>G) R28S (1714A>C) Q32R (1725A>G) W34Q (1730T>C 1731G>A) R36G (1736A>G) N39del (1745A>C 1746_1748delACT) S40P (1746_1748delACT) P41S (1751C>A 1752C>G) D47E (1771T>A) Q49R (1776A>G) S53P (1787T>C) S53_F54insS (1790_1791insCCC) F54L (1790_1791insCCC) N55S (1794A>G)
Codon mutations:
GAT5AAT (1643G>A) CTG6TTG (1646C>T) CTA9CAA (1656T>A) AAG12GAG (1664A>G) AGG14CGG (1670A>C) GAA15AAA (1673G>A) TTT16CTT (1676T>C) TCT17CAT (1679T>C 1680C>A) TCA18CCA (1682T>C) GAG19GAA (1687G>A) ACC21GCC (1691A>G) AAC24ATC (1701A>T) ACC27GCC (1709A>G) AGA28AGC (1714A>C) GAG30GAA (1720G>A) CAG32CGG (1725A>G) GTC33GTT (1729C>T) TGG34CAG (1730T>C 1731G>A) GGT35GGA (1735T>A) AGA36GGA (1736A>G) AAC39del (1745A>C 1746_1748delACT) TCC40CCC (1746_1748delACT) CCC41AGC (1751C>A 1752C>G) TCA42TCC (1756A>C) GCC46GCA (1768C>A) GAT47GAA (1771T>A) CAA49CGA (1776A>G) GGA50GGG (1780A>G) TCC53CCC (1787T>C) TCC53_TTT54insTCC (1790_1791insCCC) TTT54CTT (1790_1791insCCC) AAC55AGC (1794A>G)
1995100%651193.0%994 (99.8%)906 (91.0%)1/1/0/00
Protein mutations:
L1Q (1656T>A) K4E (1664A>G) E7K (1673G>A) F8L (1676T>C) S9H (1679T>C 1680C>A) S10P (1682T>C) T13A (1691A>G) N16I (1701A>T) T19A (1709A>G) R20S (1714A>C) Q24R (1725A>G) W26Q (1730T>C 1731G>A) R28G (1736A>G) N31del (1745A>C 1746_1748delACT) S32P (1746_1748delACT) P33S (1751C>A 1752C>G) D39E (1771T>A) Q41R (1776A>G) S45P (1787T>C) S45_F46insS (1790_1791insCCC) F46L (1790_1791insCCC) N47S (1794A>G) V51I (1805G>A) K62R (1839A>G 1840G>A) I63V (1841A>G) E83D (1903A>C) M84I (1906G>A) S85N (1908G>A) R89K (1920G>A) R105K (1968G>A) Q109S (1979C>A 1980A>G 1981G>C) K118R (2007A>G 2008A>G) L137M (2063C>A) V182T (2198G>A 2199T>C) T186M (2211C>T 2212A>G) E269K (2459G>A 2461A>G) I282T (2499T>C 2500A>C) I289V (2519A>G) S309Y (2579A>T 2580G>A) E316D (2602G>T) K320A (2612A>G 2613A>C) Q321K (2615C>A) Q354E (2714C>G) R358K (2727G>A 2728G>A) V392Q (2828G>C 2829T>A 2830G>A) E395D (2839A>C) R424K (2925G>A 2926G>A) T433A (2951A>G) E438D (2968A>C) V439I (2969G>A) I440V (2972A>G 2974A>G) E444T (2984G>A 2985A>C) V464A (3045T>C 3046G>A) R503K (3162G>A) G506S (3170G>T 3171G>C) T523S (3221A>T 3223C>T) T524L (3224A>C 3225C>T) K537R (3264A>G) Q541L (3275C>T 3276A>T) E546D (3292A>T) K578T (3387A>C) A593S (3431G>T) L599K (3449T>A 3450T>A) N607D (3473A>G 3475T>C) V613A (3492T>C 3493T>G) T615S (3497A>T) D618E (3508C>G) T624A (3524A>G) Y630Q (3542T>C 3544T>G) L638S (3567T>C) Q659K (3629C>A 3631A>G) A681S (3695G>T) D717E (3805T>G) S724N (3825G>A 3826T>C) L735I (3857C>A 3859G>A) P737A (3863C>G) V779I (3989G>A) I791L (4025A>C) S826T (4131G>C) G830S (4142G>A) R834K (4155G>A) K843Q (4181A>C) V872I (4268G>A) V908I (4376G>A) K918R (4407A>G) T925I (4428C>T) N939D (4469A>G 4471T>C) L941V (4475C>G) D963E (4543C>A) S990G (4622A>G)
Codon mutations:
CTA1CAA (1656T>A) AAG4GAG (1664A>G) AGG6CGG (1670A>C) GAA7AAA (1673G>A) TTT8CTT (1676T>C) TCT9CAT (1679T>C 1680C>A) TCA10CCA (1682T>C) GAG11GAA (1687G>A) ACC13GCC (1691A>G) AAC16ATC (1701A>T) ACC19GCC (1709A>G) AGA20AGC (1714A>C) GAG22GAA (1720G>A) CAG24CGG (1725A>G) GTC25GTT (1729C>T) TGG26CAG (1730T>C 1731G>A) GGT27GGA (1735T>A) AGA28GGA (1736A>G) AAC31del (1745A>C 1746_1748delACT) TCC32CCC (1746_1748delACT) CCC33AGC (1751C>A 1752C>G) TCA34TCC (1756A>C) GCC38GCA (1768C>A) GAT39GAA (1771T>A) CAA41CGA (1776A>G) GGA42GGG (1780A>G) TCC45CCC (1787T>C) TCC45_TTT46insTCC (1790_1791insCCC) TTT46CTT (1790_1791insCCC) AAC47AGC (1794A>G) CAG50CAA (1804G>A) GTC51ATC (1805G>A) CTC58CTA (1828C>A) AAG62AGA (1839A>G 1840G>A) ATA63GTA (1841A>G) GGG65GGA (1849G>A) CAA66CAG (1852A>G) GAA83GAC (1903A>C) ATG84ATA (1906G>A) AGT85AAT (1908G>A) AGA89AAA (1920G>A) AGA105AAA (1968G>A) CAG109AGC (1979C>A 1980A>G 1981G>C) ATC114ATT (1996C>T) CAT117CAC (2005T>C) AAA118AGG (2007A>G 2008A>G) GTA123GTG (2023A>G) ACA128ACG (2038A>G) CTG137ATG (2063C>A) ACT139ACC (2071T>C) TGC143TGT (2083C>T) CCC148CCA (2098C>A) AGC150AGT (2104C>T) TTA159TTG (2131A>G) AAA167AAG (2155A>G) GCA180GCT (2194A>T) GTA182ACA (2198G>A 2199T>C) ATT184ATA (2206T>A) ACA186ATG (2211C>T 2212A>G) GAG187GAA (2215G>A) AAG190AAA (2224G>A) GGG192GGA (2230G>A) AGA219AGG (2311A>G) AAG229AAA (2341G>A) GAC233GAT (2353C>T) TTC234TTT (2356C>T) GAA236GAG (2362A>G) CCA242CCG (2380A>G) CCC244CCA (2386C>A) AAA251AAG (2407A>G) GGT259GGG (2431T>G) CCC266CCT (2452C>T) GAA269AAG (2459G>A 2461A>G) GAC270GAT (2464C>T) TAT274TAC (2476T>C) TTT277TTC (2485T>C) ATA282ACC (2499T>C 2500A>C) GGG288GGA (2518G>A) ATT289GTT (2519A>G) AGA290AGG (2524A>G) TAT291TAC (2527T>C) CAG298CAA (2548G>A) AGT309TAT (2579A>T 2580G>A) GAG316GAT (2602G>T) CCT317CCC (2605T>C) AAA320GCA (2612A>G 2613A>C) CAA321AAA (2615C>A) TAT328TAC (2638T>C) GGA337GGG (2665A>G) GGG343GGA (2683G>A) GAG350GAA (2704G>A) CTG352TTA (2708C>T 2710G>A) CAA354GAA (2714C>G) CTG356CTA (2722G>A) TTG357CTG (2723T>C) AGG358AAA (2727G>A 2728G>A) CTT361TTA (2735C>T 2737T>A) ACC362ACT (2740C>T) CAG369CAA (2761G>A) CCT372CCC (2770T>C) GGT378GGG (2788T>G) GTA388GTG (2818A>G) GTG392CAA (2828G>C 2829T>A 2830G>A) CTG393TTG (2831C>T) GAA395GAC (2839A>C) AAA396AAG (2842A>G) GAC403GAT (2863C>T) GTG408GTA (2878G>A) GGG409GGA (2881G>A) TTG411CTA (2885T>C 2887G>A) TAC418TAT (2908C>T) AGG424AAA (2925G>A 2926G>A) AGA431AGG (2947A>G) ACC433GCC (2951A>G) AAA434AAG (2956A>G) GAA438GAC (2968A>C) GTA439ATA (2969G>A) ATA440GTG (2972A>G 2974A>G) CTA442CTG (2980A>G) ACA443ACT (2983A>T) GAA444ACA (2984G>A 2985A>C) CTA448TTA (2996C>T) CTG450TTG (3002C>T) GAA452GAG (3010A>G) AAC453AAT (3013C>T) AGA454AGG (3016A>G) GGA463GGG (3043A>G) GTG464GCA (3045T>C 3046G>A) CCA468CCG (3058A>G) AAG478AAA (3088G>A) CAG479CAA (3091G>A) GGC482GGG (3100C>G) CTG496CTA (3142G>A) AAA500AAG (3154A>G) AGA503AAA (3162G>A) GGT506TCT (3170G>T 3171G>C) CAA514CAG (3196A>G) GAG517GAA (3205G>A) AAA521AAG (3217A>G) ACC523TCT (3221A>T 3223C>T) ACA524CTA (3224A>C 3225C>T) GGA531GGC (3247A>C) AAA535AAG (3259A>G) AAA537AGA (3264A>G) CTG538CTA (3268G>A) CAA541TTA (3275C>T 3276A>T) AAG542AAA (3280G>A) GAA543GAG (3283A>G) GAA546GAT (3292A>T) TAT552TAC (3310T>C) GTT564GTC (3346T>C) CCT567CCC (3355T>C) CCC568CCT (3358C>T) TTA569CTA (3359T>C) GTG570GTA (3364G>A) TTA572CTA (3368T>C) TAC574TAT (3376C>T) GAG577GAA (3385G>A) AAA578ACA (3387A>C) GAA579GAG (3391A>G) GCT593TCT (3431G>T) AAC594AAT (3436C>T) AGG595AGA (3439G>A) ACT597ACC (3445T>C) TTA599AAA (3449T>A 3450T>A) AAT607GAC (3473A>G 3475T>C) GTT613GCG (3492T>C 3493T>G) ACC615TCC (3497A>T) GAC618GAG (3508C>G) ACA619ACT (3511A>T) ACT624GCT (3524A>G) TAT630CAG (3542T>C 3544T>G) CTA631TTA (3545C>T) TTG633TTA (3553G>A) TCG636TCA (3562G>A) TTA638TCA (3567T>C) CAA647CAG (3595A>G) CAA659AAG (3629C>A 3631A>G) CAG671CAA (3667G>A) TAT679TAC (3691T>C) GCA681TCA (3695G>T) GGA688GGG (3718A>G) CTA707CTG (3775A>G) GGA711GGG (3787A>G) GCC715GCA (3799C>A) CAA716CAG (3802A>G) GAT717GAG (3805T>G) GAG720GAA (3814G>A) AGT724AAC (3825G>A 3826T>C) AAC734AAT (3856C>T) CTG735ATA (3857C>A 3859G>A) CCT737GCT (3863C>G) GCC745GCT (3889C>T) GGA754GGG (3916A>G) GAC762GAT (3940C>T) AGT764AGC (3946T>C) GGA766GGG (3952A>G) CTA770TTA (3962C>T) GTT779ATT (3989G>A) GTT784GTC (4006T>C) GCC787GCT (4015C>T) GGA789GGG (4021A>G) TAT790TAC (4024T>C) ATA791CTA (4025A>C) ATT796ATC (4042T>C) GGG801GGA (4057G>A) CAG802CAA (4060G>A) GAA803GAG (4063A>G) GCA805GCC (4069A>C) TAT806TAC (4072T>C) TTT807TTC (4075T>C) CTT808CTA (4078T>A) TTA809CTA (4079T>C) AAA810AAG (4084A>G) ACT822ACA (4120T>A) AGC826ACC (4131G>C) GGT830AGT (4142G>A) GCT831GCC (4147T>C) AGG834AAG (4155G>A) GCC835GCA (4159C>A) GCC836GCT (4162C>T) GCG840GCA (4174G>A) GGA841GGT (4177A>T) AAG843CAG (4181A>C) CCC849CCT (4201C>T) AAT851AAC (4207T>C) ATT868ATC (4258T>C) GTA872ATA (4268G>A) GAT874GAC (4276T>C) CAG875CAA (4279G>A) GTA883GTC (4303A>C) ATC889ATT (4321C>T) GGG900GGA (4354G>A) GTA908ATA (4376G>A) AAA918AGA (4407A>G) ACA925ATA (4428C>T) TTT930TTC (4444T>C) AAT939GAC (4469A>G 4471T>C) CTT941GTT (4475C>G) CTC948CTA (4498C>A) GTA957GTC (4525A>C) GAT960GAC (4534T>C) GAC963GAA (4543C>A) AAA965AAG (4549A>G) GTG967GTT (4555G>T) AGT990GGT (4622A>G)
199100%65093.1%99 (100%)88 (88.9%)0/0/0/00
Protein mutations:
V3I (1805G>A) K14R (1839A>G 1840G>A) I15V (1841A>G) E35D (1903A>C) M36I (1906G>A) S37N (1908G>A) R41K (1920G>A) R57K (1968G>A) Q61S (1979C>A 1980A>G 1981G>C) K70R (2007A>G 2008A>G) L89M (2063C>A)
Codon mutations:
CAG2CAA (1804G>A) GTC3ATC (1805G>A) CTC10CTA (1828C>A) AAG14AGA (1839A>G 1840G>A) ATA15GTA (1841A>G) GGG17GGA (1849G>A) CAA18CAG (1852A>G) GAA35GAC (1903A>C) ATG36ATA (1906G>A) AGT37AAT (1908G>A) AGA41AAA (1920G>A) AGA57AAA (1968G>A) CAG61AGC (1979C>A 1980A>G 1981G>C) ATC66ATT (1996C>T) CAT69CAC (2005T>C) AAA70AGG (2007A>G 2008A>G) GTA75GTG (2023A>G) ACA80ACG (2038A>G) CTG89ATG (2063C>A) ACT91ACC (2071T>C) TGC95TGT (2083C>T)
1560100%371394.7%560 (100%)521 (93.0%)0/0/0/00
Protein mutations:
V35T (2198G>A 2199T>C) T39M (2211C>T 2212A>G) E122K (2459G>A 2461A>G) I135T (2499T>C 2500A>C) I142V (2519A>G) S162Y (2579A>T 2580G>A) E169D (2602G>T) K173A (2612A>G 2613A>C) Q174K (2615C>A) Q207E (2714C>G) R211K (2727G>A 2728G>A) V245Q (2828G>C 2829T>A 2830G>A) E248D (2839A>C) R277K (2925G>A 2926G>A) T286A (2951A>G) E291D (2968A>C) V292I (2969G>A) I293V (2972A>G 2974A>G) E297T (2984G>A 2985A>C) V317A (3045T>C 3046G>A) R356K (3162G>A) G359S (3170G>T 3171G>C) T376S (3221A>T 3223C>T) T377L (3224A>C 3225C>T) K390R (3264A>G) Q394L (3275C>T 3276A>T) E399D (3292A>T) K431T (3387A>C) A446S (3431G>T) L452K (3449T>A 3450T>A) N460D (3473A>G 3475T>C) V466A (3492T>C 3493T>G) T468S (3497A>T) D471E (3508C>G) T477A (3524A>G) Y483Q (3542T>C 3544T>G) L491S (3567T>C) Q512K (3629C>A 3631A>G) A534S (3695G>T)
Codon mutations:
CCC1CCA (2098C>A) AGC3AGT (2104C>T) TTA12TTG (2131A>G) AAA20AAG (2155A>G) GCA33GCT (2194A>T) GTA35ACA (2198G>A 2199T>C) ATT37ATA (2206T>A) ACA39ATG (2211C>T 2212A>G) GAG40GAA (2215G>A) AAG43AAA (2224G>A) GGG45GGA (2230G>A) AGA72AGG (2311A>G) AAG82AAA (2341G>A) GAC86GAT (2353C>T) TTC87TTT (2356C>T) GAA89GAG (2362A>G) CCA95CCG (2380A>G) CCC97CCA (2386C>A) AAA104AAG (2407A>G) GGT112GGG (2431T>G) CCC119CCT (2452C>T) GAA122AAG (2459G>A 2461A>G) GAC123GAT (2464C>T) TAT127TAC (2476T>C) TTT130TTC (2485T>C) ATA135ACC (2499T>C 2500A>C) GGG141GGA (2518G>A) ATT142GTT (2519A>G) AGA143AGG (2524A>G) TAT144TAC (2527T>C) CAG151CAA (2548G>A) AGT162TAT (2579A>T 2580G>A) GAG169GAT (2602G>T) CCT170CCC (2605T>C) AAA173GCA (2612A>G 2613A>C) CAA174AAA (2615C>A) TAT181TAC (2638T>C) GGA190GGG (2665A>G) GGG196GGA (2683G>A) GAG203GAA (2704G>A) CTG205TTA (2708C>T 2710G>A) CAA207GAA (2714C>G) CTG209CTA (2722G>A) TTG210CTG (2723T>C) AGG211AAA (2727G>A 2728G>A) CTT214TTA (2735C>T 2737T>A) ACC215ACT (2740C>T) CAG222CAA (2761G>A) CCT225CCC (2770T>C) GGT231GGG (2788T>G) GTA241GTG (2818A>G) GTG245CAA (2828G>C 2829T>A 2830G>A) CTG246TTG (2831C>T) GAA248GAC (2839A>C) AAA249AAG (2842A>G) GAC256GAT (2863C>T) GTG261GTA (2878G>A) GGG262GGA (2881G>A) TTG264CTA (2885T>C 2887G>A) TAC271TAT (2908C>T) AGG277AAA (2925G>A 2926G>A) AGA284AGG (2947A>G) ACC286GCC (2951A>G) AAA287AAG (2956A>G) GAA291GAC (2968A>C) GTA292ATA (2969G>A) ATA293GTG (2972A>G 2974A>G) CTA295CTG (2980A>G) ACA296ACT (2983A>T) GAA297ACA (2984G>A 2985A>C) CTA301TTA (2996C>T) CTG303TTG (3002C>T) GAA305GAG (3010A>G) AAC306AAT (3013C>T) AGA307AGG (3016A>G) GGA316GGG (3043A>G) GTG317GCA (3045T>C 3046G>A) CCA321CCG (3058A>G) AAG331AAA (3088G>A) CAG332CAA (3091G>A) GGC335GGG (3100C>G) CTG349CTA (3142G>A) AAA353AAG (3154A>G) AGA356AAA (3162G>A) GGT359TCT (3170G>T 3171G>C) CAA367CAG (3196A>G) GAG370GAA (3205G>A) AAA374AAG (3217A>G) ACC376TCT (3221A>T 3223C>T) ACA377CTA (3224A>C 3225C>T) GGA384GGC (3247A>C) AAA388AAG (3259A>G) AAA390AGA (3264A>G) CTG391CTA (3268G>A) CAA394TTA (3275C>T 3276A>T) AAG395AAA (3280G>A) GAA396GAG (3283A>G) GAA399GAT (3292A>T) TAT405TAC (3310T>C) GTT417GTC (3346T>C) CCT420CCC (3355T>C) CCC421CCT (3358C>T) TTA422CTA (3359T>C) GTG423GTA (3364G>A) TTA425CTA (3368T>C) TAC427TAT (3376C>T) GAG430GAA (3385G>A) AAA431ACA (3387A>C) GAA432GAG (3391A>G) GCT446TCT (3431G>T) AAC447AAT (3436C>T) AGG448AGA (3439G>A) ACT450ACC (3445T>C) TTA452AAA (3449T>A 3450T>A) AAT460GAC (3473A>G 3475T>C) GTT466GCG (3492T>C 3493T>G) ACC468TCC (3497A>T) GAC471GAG (3508C>G) ACA472ACT (3511A>T) ACT477GCT (3524A>G) TAT483CAG (3542T>C 3544T>G) CTA484TTA (3545C>T) TTG486TTA (3553G>A) TCG489TCA (3562G>A) TTA491TCA (3567T>C) CAA500CAG (3595A>G) CAA512AAG (3629C>A 3631A>G) CAG524CAA (3667G>A) TAT532TAC (3691T>C) GCA534TCA (3695G>T) GGA541GGG (3718A>G) CTA560CTG (3775A>G)
1440100%302295.4%440 (100%)412 (93.6%)0/0/0/00
Protein mutations:
V35T (2198G>A 2199T>C) T39M (2211C>T 2212A>G) E122K (2459G>A 2461A>G) I135T (2499T>C 2500A>C) I142V (2519A>G) S162Y (2579A>T 2580G>A) E169D (2602G>T) K173A (2612A>G 2613A>C) Q174K (2615C>A) Q207E (2714C>G) R211K (2727G>A 2728G>A) V245Q (2828G>C 2829T>A 2830G>A) E248D (2839A>C) R277K (2925G>A 2926G>A) T286A (2951A>G) E291D (2968A>C) V292I (2969G>A) I293V (2972A>G 2974A>G) E297T (2984G>A 2985A>C) V317A (3045T>C 3046G>A) R356K (3162G>A) G359S (3170G>T 3171G>C) T376S (3221A>T 3223C>T) T377L (3224A>C 3225C>T) K390R (3264A>G) Q394L (3275C>T 3276A>T) E399D (3292A>T) K431T (3387A>C)
Codon mutations:
CCC1CCA (2098C>A) AGC3AGT (2104C>T) TTA12TTG (2131A>G) AAA20AAG (2155A>G) GCA33GCT (2194A>T) GTA35ACA (2198G>A 2199T>C) ATT37ATA (2206T>A) ACA39ATG (2211C>T 2212A>G) GAG40GAA (2215G>A) AAG43AAA (2224G>A) GGG45GGA (2230G>A) AGA72AGG (2311A>G) AAG82AAA (2341G>A) GAC86GAT (2353C>T) TTC87TTT (2356C>T) GAA89GAG (2362A>G) CCA95CCG (2380A>G) CCC97CCA (2386C>A) AAA104AAG (2407A>G) GGT112GGG (2431T>G) CCC119CCT (2452C>T) GAA122AAG (2459G>A 2461A>G) GAC123GAT (2464C>T) TAT127TAC (2476T>C) TTT130TTC (2485T>C) ATA135ACC (2499T>C 2500A>C) GGG141GGA (2518G>A) ATT142GTT (2519A>G) AGA143AGG (2524A>G) TAT144TAC (2527T>C) CAG151CAA (2548G>A) AGT162TAT (2579A>T 2580G>A) GAG169GAT (2602G>T) CCT170CCC (2605T>C) AAA173GCA (2612A>G 2613A>C) CAA174AAA (2615C>A) TAT181TAC (2638T>C) GGA190GGG (2665A>G) GGG196GGA (2683G>A) GAG203GAA (2704G>A) CTG205TTA (2708C>T 2710G>A) CAA207GAA (2714C>G) CTG209CTA (2722G>A) TTG210CTG (2723T>C) AGG211AAA (2727G>A 2728G>A) CTT214TTA (2735C>T 2737T>A) ACC215ACT (2740C>T) CAG222CAA (2761G>A) CCT225CCC (2770T>C) GGT231GGG (2788T>G) GTA241GTG (2818A>G) GTG245CAA (2828G>C 2829T>A 2830G>A) CTG246TTG (2831C>T) GAA248GAC (2839A>C) AAA249AAG (2842A>G) GAC256GAT (2863C>T) GTG261GTA (2878G>A) GGG262GGA (2881G>A) TTG264CTA (2885T>C 2887G>A) TAC271TAT (2908C>T) AGG277AAA (2925G>A 2926G>A) AGA284AGG (2947A>G) ACC286GCC (2951A>G) AAA287AAG (2956A>G) GAA291GAC (2968A>C) GTA292ATA (2969G>A) ATA293GTG (2972A>G 2974A>G) CTA295CTG (2980A>G) ACA296ACT (2983A>T) GAA297ACA (2984G>A 2985A>C) CTA301TTA (2996C>T) CTG303TTG (3002C>T) GAA305GAG (3010A>G) AAC306AAT (3013C>T) AGA307AGG (3016A>G) GGA316GGG (3043A>G) GTG317GCA (3045T>C 3046G>A) CCA321CCG (3058A>G) AAG331AAA (3088G>A) CAG332CAA (3091G>A) GGC335GGG (3100C>G) CTG349CTA (3142G>A) AAA353AAG (3154A>G) AGA356AAA (3162G>A) GGT359TCT (3170G>T 3171G>C) CAA367CAG (3196A>G) GAG370GAA (3205G>A) AAA374AAG (3217A>G) ACC376TCT (3221A>T 3223C>T) ACA377CTA (3224A>C 3225C>T) GGA384GGC (3247A>C) AAA388AAG (3259A>G) AAA390AGA (3264A>G) CTG391CTA (3268G>A) CAA394TTA (3275C>T 3276A>T) AAG395AAA (3280G>A) GAA396GAG (3283A>G) GAA399GAT (3292A>T) TAT405TAC (3310T>C) GTT417GTC (3346T>C) CCT420CCC (3355T>C) CCC421CCT (3358C>T) TTA422CTA (3359T>C) GTG423GTA (3364G>A) TTA425CTA (3368T>C) TAC427TAT (3376C>T) GAG430GAA (3385G>A) AAA431ACA (3387A>C) GAA432GAG (3391A>G)
1288100%197595.9%288 (100%)270 (93.8%)0/0/0/00
Protein mutations:
D10E (3805T>G) S17N (3825G>A 3826T>C) L28I (3857C>A 3859G>A) P30A (3863C>G) V72I (3989G>A) I84L (4025A>C) S119T (4131G>C) G123S (4142G>A) R127K (4155G>A) K136Q (4181A>C) V165I (4268G>A) V201I (4376G>A) K211R (4407A>G) T218I (4428C>T) N232D (4469A>G 4471T>C) L234V (4475C>G) D256E (4543C>A) S283G (4622A>G)
Codon mutations:
GGA4GGG (3787A>G) GCC8GCA (3799C>A) CAA9CAG (3802A>G) GAT10GAG (3805T>G) GAG13GAA (3814G>A) AGT17AAC (3825G>A 3826T>C) AAC27AAT (3856C>T) CTG28ATA (3857C>A 3859G>A) CCT30GCT (3863C>G) GCC38GCT (3889C>T) GGA47GGG (3916A>G) GAC55GAT (3940C>T) AGT57AGC (3946T>C) GGA59GGG (3952A>G) CTA63TTA (3962C>T) GTT72ATT (3989G>A) GTT77GTC (4006T>C) GCC80GCT (4015C>T) GGA82GGG (4021A>G) TAT83TAC (4024T>C) ATA84CTA (4025A>C) ATT89ATC (4042T>C) GGG94GGA (4057G>A) CAG95CAA (4060G>A) GAA96GAG (4063A>G) GCA98GCC (4069A>C) TAT99TAC (4072T>C) TTT100TTC (4075T>C) CTT101CTA (4078T>A) TTA102CTA (4079T>C) AAA103AAG (4084A>G) ACT115ACA (4120T>A) AGC119ACC (4131G>C) GGT123AGT (4142G>A) GCT124GCC (4147T>C) AGG127AAG (4155G>A) GCC128GCA (4159C>A) GCC129GCT (4162C>T) GCG133GCA (4174G>A) GGA134GGT (4177A>T) AAG136CAG (4181A>C) CCC142CCT (4201C>T) AAT144AAC (4207T>C) ATT161ATC (4258T>C) GTA165ATA (4268G>A) GAT167GAC (4276T>C) CAG168CAA (4279G>A) GTA176GTC (4303A>C) ATC182ATT (4321C>T) GGG193GGA (4354G>A) GTA201ATA (4376G>A) AAA211AGA (4407A>G) ACA218ATA (4428C>T) TTT223TTC (4444T>C) AAT232GAC (4469A>G 4471T>C) CTT234GTT (4475C>G) CTC241CTA (4498C>A) GTA250GTC (4525A>C) GAT253GAC (4534T>C) GAC256GAA (4543C>A) AAA258AAG (4549A>G) GTG260GTT (4555G>T) AGT283GGT (4622A>G)
1501100%302787.4%496 (98.8%)422 (84.1%)1/5/0/02
Protein mutations:
E12K (369G>A) R15A (378C>G 379G>C 380A>T) K30R (424A>G) I34L (435A>C) V46L (471G>C) N47D (474A>G) Q59K (510C>A) L61I (516C>A 518G>A) R76K (562G>A) V82I (579G>A) T84V (585A>G 586C>T) C87Y (595G>A) R91K (607G>A) I92V (609A>G) I94V (615A>G) D102E (641C>G) I104L (645A>C) S111G (666A>G) K112R (669A>C 670A>G) K113Q (672A>C) A115T (678G>A) A119T (690G>A 692A>T) D121E (698C>A) T122K (700C>A) H124_Q127del (705_716delCACAGCAATCAG) I138L (747A>C 749C>T) A146S (771G>T 773C>T) I147L (774A>T) V159I (810G>A) E203D (944G>C) V215L (978G>T 980G>A) V218T (987G>A 988T>C 989G>A) H219Q (992T>G) A224P (1005G>C 1007A>C) M228I (1019G>A) G248Q (1077G>C 1078G>A) N252G (1089A>G 1090A>G 1091T>C) I256V (1101A>G) T280V (1173A>G 1174C>T) Y301F (1237A>T) S310T (1263T>A) N315G (1278A>G 1279A>G) E319D (1292A>C) A340G (1354C>G) G357S (1404G>A) V370A (1444T>C) S373T (1452T>A) T375A (1458A>G 1460C>A) R380K (1474G>A) G381S (1476G>A 1478C>T) R384K (1486G>A) N385G (1488A>G 1489A>G) K388R (1498A>G 1499G>A) T401I (1537C>T) R403K (1543G>A) K418R (1588A>G 1589G>A) Y441N (1656T>A) L449I (1680C>A 1682T>C) S451N (1687G>A) T456S (1701A>T) E460A (1714A>C) S462N (1720G>A) R464G (1725A>G) S465F (1729C>T 1730T>C) G466R (1731G>A) V467E (1735T>A 1736A>G) T471del (1746_1748delACT) P473A (1752C>G) Q474P (1756A>C) P478Q (1768C>A) I479K (1771T>A) K481E (1776A>G) E482G (1780A>G) P485_L486insP (1790_1791insCCC) T487A (1794A>G) R490K (1804G>A 1805G>A) S498* (1828C>A)
Codon mutations:
GAA12AAA (369G>A) CGA15GCT (378C>G 379G>C 380A>T) CCA23CCG (404A>G) AAA30AGA (424A>G) TTA31CTA (426T>C) ATA34CTA (435A>C) TTC44TTT (467C>T) GTT46CTT (471G>C) AAT47GAT (474A>G) CCT48CCA (479T>A) CTG50CTT (485G>T) TTA51CTA (486T>C) AGA58CGA (507A>C) CAA59AAA (510C>A) CTG61ATA (516C>A 518G>A) CTA64TTA (525C>T) GAA74GAG (557A>G) CTT75CTC (560T>C) AGA76AAA (562G>A) GTA82ATA (579G>A) ACC84GTC (585A>G 586C>T) TGT87TAT (595G>A) GTG88GTA (599G>A) AGG91AAG (607G>A) ATA92GTA (609A>G) ATA94GTA (615A>G) GAA99GAG (632A>G) GAC102GAG (641C>G) ATA104CTA (645A>C) GAG107GAA (656G>A) AGT111GGT (666A>G) AAG112CGG (669A>C 670A>G) AAA113CAA (672A>C) AAA114AAG (677A>G) GCA115ACA (678G>A) GCA118GCG (689A>G) GCA119ACT (690G>A 692A>T) GAC121GAA (698C>A) ACA122AAA (700C>A) GGA123GGG (704A>G) CAC124_CAG127del (705_716delCACAGCAATCAG) AGC129AGT (722C>T) GTG135GTA (740G>A) AAC137AAT (746C>T) ATC138CTT (747A>C 749C>T) GGG140GGA (755G>A) CAT144CAC (767T>C) GCC146TCT (771G>T 773C>T) ATA147TTA (774A>T) AAA157AAG (806A>G) GTA158GTG (809A>G) GTA159ATA (810G>A) TTC164TTT (827C>T) AGC165AGT (830C>T) GTG168GTA (839G>A) GGA178GGG (869A>G) ACC180ACT (875C>T) CTA188TTA (897C>T) AAC189AAT (902C>T) GAG203GAC (944G>C) GAT213GAC (974T>C) GTG215TTA (978G>T 980G>A) GTG218ACA (987G>A 988T>C 989G>A) CAT219CAG (992T>G) GGG221GGA (998G>A) CCT222CCC (1001T>C) ATT223ATC (1004T>C) GCA224CCC (1005G>C 1007A>C) GGC226GGT (1013C>T) ATG228ATA (1019G>A) AGA229AGG (1022A>G) CCA231CCT (1028A>T) GAC235GAT (1040C>T) GCA237GCT (1046A>T) GGA248CAA (1077G>C 1078G>A) AAT252GGC (1089A>G 1090A>G 1091T>C) AAT253AAC (1094T>C) ATC256GTC (1101A>G) GTA258GTG (1109A>G) ATT261ATA (1118T>A) ATA266ATC (1133A>C) CTG268CTA (1139G>A) ACC280GTC (1173A>G 1174C>T) CTG283TTG (1182C>T) GGA288GGG (1199A>G) AAG290AAA (1205G>A) CGG299AGG (1230C>A) TAT301TTT (1237A>T) ACT303ACC (1244T>C) GCC306GCT (1253C>T) TCA310ACA (1263T>A) GAG312GAA (1271G>A) AAA314AAG (1277A>G) AAT315GGT (1278A>G 1279A>G) GAA319GAC (1292A>C) ACT332ACC (1331T>C) GCG340GGG (1354C>G) GTA353GTG (1394A>G) CCC356CCT (1403C>T) GGC357AGC (1404G>A) GAA365GAG (1430A>G) GTA370GCA (1444T>C) TCA373ACA (1452T>A) ACC375GCA (1458A>G 1460C>A) AGA380AAA (1474G>A) GGC381AGT (1476G>A 1478C>T) AAT382AAC (1481T>C) AGG384AAG (1486G>A) AAC385GGC (1488A>G 1489A>G) AAG388AGA (1498A>G 1499G>A) AAG391AAA (1508G>A) TGT392TGC (1511T>C) TTC393TTT (1514C>T) GGG399GGA (1532G>A) ACA401ATA (1537C>T) AGA403AAA (1543G>A) AGG409AGA (1562G>A) AAG418AGA (1588A>G 1589G>A) GAT425GAC (1610T>C) TGT426TGC (1613T>C) GAG428GAA (1619G>A) AAG436AAA (1643G>A) ATC437ATT (1646C>T) TAC441AAC (1656T>A) GGA443GGG (1664A>G) CCA445CCC (1670A>C) GGG446GGA (1673G>A) AAT447AAC (1676T>C) TTT448TTC (1679T>C) CTT449ATC (1680C>A 1682T>C) AGC451AAC (1687G>A) AGA452AGG (1691A>G) ACA456TCA (1701A>T) CCA458CCG (1709A>G) GAA460GCA (1714A>C) AGC462AAC (1720G>A) AGG464GGG (1725A>G) TCT465TTC (1729C>T 1730T>C) GGG466AGG (1731G>A) GTA467GAG (1735T>A 1736A>G) ACA470ACC (1745A>C) ACT471del (1746_1748delACT) CCC472CCA (1751C>A) CCT473GCT (1752C>G) CAG474CCG (1756A>C) CCG478CAG (1768C>A) ATA479AAA (1771T>A) AAG481GAG (1776A>G) GAA482GGA (1780A>G) TAT484TAC (1787T>C) CCT485_TTA486insCCC (1790_1791insCCC) ACT487GCT (1794A>G) AGG490AAA (1804G>A 1805G>A) TCG498TAG (1828C>A)
1132100%69584.2%128 (97.0%)104 (78.8%)0/4/0/00
Protein mutations:
E12K (369G>A) R15A (378C>G 379G>C 380A>T) K30R (424A>G) I34L (435A>C) V46L (471G>C) N47D (474A>G) Q59K (510C>A) L61I (516C>A 518G>A) R76K (562G>A) V82I (579G>A) T84V (585A>G 586C>T) C87Y (595G>A) R91K (607G>A) I92V (609A>G) I94V (615A>G) D102E (641C>G) I104L (645A>C) S111G (666A>G) K112R (669A>C 670A>G) K113Q (672A>C) A115T (678G>A) A119T (690G>A 692A>T) D121E (698C>A) T122K (700C>A) H124_Q127del (705_716delCACAGCAATCAG)
Codon mutations:
GAA12AAA (369G>A) CGA15GCT (378C>G 379G>C 380A>T) CCA23CCG (404A>G) AAA30AGA (424A>G) TTA31CTA (426T>C) ATA34CTA (435A>C) TTC44TTT (467C>T) GTT46CTT (471G>C) AAT47GAT (474A>G) CCT48CCA (479T>A) CTG50CTT (485G>T) TTA51CTA (486T>C) AGA58CGA (507A>C) CAA59AAA (510C>A) CTG61ATA (516C>A 518G>A) CTA64TTA (525C>T) GAA74GAG (557A>G) CTT75CTC (560T>C) AGA76AAA (562G>A) GTA82ATA (579G>A) ACC84GTC (585A>G 586C>T) TGT87TAT (595G>A) GTG88GTA (599G>A) AGG91AAG (607G>A) ATA92GTA (609A>G) ATA94GTA (615A>G) GAA99GAG (632A>G) GAC102GAG (641C>G) ATA104CTA (645A>C) GAG107GAA (656G>A) AGT111GGT (666A>G) AAG112CGG (669A>C 670A>G) AAA113CAA (672A>C) AAA114AAG (677A>G) GCA115ACA (678G>A) GCA118GCG (689A>G) GCA119ACT (690G>A 692A>T) GAC121GAA (698C>A) ACA122AAA (700C>A) GGA123GGG (704A>G) CAC124_CAG127del (705_716delCACAGCAATCAG) AGC129AGT (722C>T)
1231100%151593.5%231 (100%)211 (91.3%)0/0/0/00
Protein mutations:
I6L (747A>C 749C>T) A14S (771G>T 773C>T) I15L (774A>T) V27I (810G>A) E71D (944G>C) V83L (978G>T 980G>A) V86T (987G>A 988T>C 989G>A) H87Q (992T>G) A92P (1005G>C 1007A>C) M96I (1019G>A) G116Q (1077G>C 1078G>A) N120G (1089A>G 1090A>G 1091T>C) I124V (1101A>G) T148V (1173A>G 1174C>T) Y169F (1237A>T) S178T (1263T>A) N183G (1278A>G 1279A>G) E187D (1292A>C) A208G (1354C>G) G225S (1404G>A)
Codon mutations:
GTG3GTA (740G>A) AAC5AAT (746C>T) ATC6CTT (747A>C 749C>T) GGG8GGA (755G>A) CAT12CAC (767T>C) GCC14TCT (771G>T 773C>T) ATA15TTA (774A>T) AAA25AAG (806A>G) GTA26GTG (809A>G) GTA27ATA (810G>A) TTC32TTT (827C>T) AGC33AGT (830C>T) GTG36GTA (839G>A) GGA46GGG (869A>G) ACC48ACT (875C>T) CTA56TTA (897C>T) AAC57AAT (902C>T) GAG71GAC (944G>C) GAT81GAC (974T>C) GTG83TTA (978G>T 980G>A) GTG86ACA (987G>A 988T>C 989G>A) CAT87CAG (992T>G) GGG89GGA (998G>A) CCT90CCC (1001T>C) ATT91ATC (1004T>C) GCA92CCC (1005G>C 1007A>C) GGC94GGT (1013C>T) ATG96ATA (1019G>A) AGA97AGG (1022A>G) CCA99CCT (1028A>T) GAC103GAT (1040C>T) GCA105GCT (1046A>T) GGA116CAA (1077G>C 1078G>A) AAT120GGC (1089A>G 1090A>G 1091T>C) AAT121AAC (1094T>C) ATC124GTC (1101A>G) GTA126GTG (1109A>G) ATT129ATA (1118T>A) ATA134ATC (1133A>C) CTG136CTA (1139G>A) ACC148GTC (1173A>G 1174C>T) CTG151TTG (1182C>T) GGA156GGG (1199A>G) AAG158AAA (1205G>A) CGG167AGG (1230C>A) TAT169TTT (1237A>T) ACT171ACC (1244T>C) GCC174GCT (1253C>T) TCA178ACA (1263T>A) GAG180GAA (1271G>A) AAA182AAG (1277A>G) AAT183GGT (1278A>G 1279A>G) GAA187GAC (1292A>C) ACT200ACC (1331T>C) GCG208GGG (1354C>G) GTA221GTG (1394A>G) CCC224CCT (1403C>T) GGC225AGC (1404G>A)
114100%6586.7%14 (100%)11 (78.6%)0/0/0/00
Protein mutations:
V7A (1444T>C) S10T (1452T>A) T12A (1458A>G 1460C>A)
Codon mutations:
GAA2GAG (1430A>G) GTA7GCA (1444T>C) TCA10ACA (1452T>A) ACC12GCA (1458A>G 1460C>A)
155100%41389.6%55 (100%)47 (85.5%)0/0/0/00
Protein mutations:
R3K (1474G>A) G4S (1476G>A 1478C>T) R7K (1486G>A) N8G (1488A>G 1489A>G) K11R (1498A>G 1499G>A) T24I (1537C>T) R26K (1543G>A) K41R (1588A>G 1589G>A)
Codon mutations:
AGA3AAA (1474G>A) GGC4AGT (1476G>A 1478C>T) AAT5AAC (1481T>C) AGG7AAG (1486G>A) AAC8GGC (1488A>G 1489A>G) AAG11AGA (1498A>G 1499G>A) AAG14AAA (1508G>A) TGT15TGC (1511T>C) TTC16TTT (1514C>T) GGG22GGA (1532G>A) ACA24ATA (1537C>T) AGA26AAA (1543G>A) AGG32AGA (1562G>A) AAG41AGA (1588A>G 1589G>A) GAT48GAC (1610T>C) TGT49TGC (1613T>C) GAG51GAA (1619G>A)
116100%12090.2%16 (100%)15 (93.8%)0/0/0/00
Protein mutations:
Y9N (1656T>A)
Codon mutations:
AAG4AAA (1643G>A) ATC5ATT (1646C>T) TAC9AAC (1656T>A) GGA11GGG (1664A>G) CCA13CCC (1670A>C) GGG14GGA (1673G>A) AAT15AAC (1676T>C) TTT16TTC (1679T>C)
152100%21862.8%51 (96.2%)33 (62.3%)1/1/0/01
Protein mutations:
L1I (1680C>A 1682T>C) S3N (1687G>A) T8S (1701A>T) E12A (1714A>C) S14N (1720G>A) R16G (1725A>G) S17F (1729C>T 1730T>C) G18R (1731G>A) V19E (1735T>A 1736A>G) T23del (1746_1748delACT) P25A (1752C>G) Q26P (1756A>C) P30Q (1768C>A) I31K (1771T>A) K33E (1776A>G) E34G (1780A>G) P37_L38insP (1790_1791insCCC) T39A (1794A>G) R42K (1804G>A 1805G>A) S50* (1828C>A)
Codon mutations:
CTT1ATC (1680C>A 1682T>C) AGC3AAC (1687G>A) AGA4AGG (1691A>G) ACA8TCA (1701A>T) CCA10CCG (1709A>G) GAA12GCA (1714A>C) AGC14AAC (1720G>A) AGG16GGG (1725A>G) TCT17TTC (1729C>T 1730T>C) GGG18AGG (1731G>A) GTA19GAG (1735T>A 1736A>G) ACA22ACC (1745A>C) ACT23del (1746_1748delACT) CCC24CCA (1751C>A) CCT25GCT (1752C>G) CAG26CCG (1756A>C) CCG30CAG (1768C>A) ATA31AAA (1771T>A) AAG33GAG (1776A>G) GAA34GGA (1780A>G) TAT36TAC (1787T>C) CCT37_TTA38insCCC (1790_1791insCCC) ACT39GCT (1794A>G) AGG42AAA (1804G>A 1805G>A) TCG50TAG (1828C>A)
1193100%126686.4%193 (100%)162 (83.9%)0/0/0/01
Protein mutations:
R19N (4642G>A 4643A>C) H27Y (4665C>T) Y30H (4674T>C) V31I (4677G>A) G33K (4683G>A 4684G>A) R36K (4693G>A 4694G>A) Y44F (4717A>T) P47R (4725C>A 4726C>G 4727T>G) R50K (4735G>A) G60E (4765G>A) D61T (4767G>A 4768A>C 4769T>A) R63E (4773A>G 4774G>A) H73L (4804A>T) T74P (4806A>C) K91Q (4857A>C 4859A>G) K92G (4860A>G 4861A>G) S95R (4871C>A) V98I (4878G>A) E101G (4888A>G 4889A>C) L109I (4911C>A 4913G>A) D117E (4937C>A) L124I (4956T>A) I128K (4969T>A) V129I (4971G>A) E134N (4986G>A 4988A>C) A151T (5037G>A) T155A (5049A>G 5051A>T) I159T (5062T>C) T167Q (5085A>C 5086C>A) T170V (5094A>G 5095C>T) K181R (5128A>G)
Codon mutations:
CAA12CAG (4622A>G) AGA19AAC (4642G>A 4643A>C) CAC27TAC (4665C>T) TAT30CAT (4674T>C) GTT31ATT (4677G>A) GGG33AAG (4683G>A 4684G>A) GCT35GCC (4691T>C) AGG36AAA (4693G>A 4694G>A) TAT44TTT (4717A>T) CCT47AGG (4725C>A 4726C>G 4727T>G) AGA50AAA (4735G>A) GGG60GAG (4765G>A) GAT61ACA (4767G>A 4768A>C 4769T>A) AGA63GAA (4773A>G 4774G>A) TTG64TTA (4778G>A) TAT69TAC (4793T>C) GGT71GGG (4799T>G) CAT73CTT (4804A>T) ACA74CCA (4806A>C) TTG81CTG (4827T>C) AAA91CAG (4857A>C 4859A>G) AAG92GGG (4860A>G 4861A>G) AGA93AGG (4865A>G) AGC95AGA (4871C>A) GTA98ATA (4878G>A) GAA101GGC (4888A>G 4889A>C) CTA102CTG (4892A>G) CTA106CTG (4904A>G) ATT107ATC (4907T>C) CTG109ATA (4911C>A 4913G>A) TAC111TAT (4919C>T) GAC113GAT (4925C>T) GAC117GAA (4937C>A) GCT119GCC (4943T>C) AGA121AGG (4949A>G) AAG122AAA (4952G>A) TTA124ATA (4956T>A) CAC127CAT (4967C>T) ATA128AAA (4969T>A) GTT129ATT (4971G>A) GAA134AAC (4986G>A 4988A>C) GTA142GTG (5012A>G) TAC147TAT (5027C>T) GCA151ACA (5037G>A) ACA155GCT (5049A>G 5051A>T) ATA159ACA (5062T>C) CCA161CCG (5069A>G) GTT166GTC (5084T>C) ACG167CAG (5085A>C 5086C>A) CTG169CTA (5093G>A) ACA170GTA (5094A>G 5095C>T) GAG171GAA (5099G>A) GAT172GAC (5102T>C) AAG181AGG (5128A>G) CAC187CAT (5147C>T)
197100%68693.1%97 (100%)89 (91.8%)0/0/0/01
Protein mutations:
H15Y (5147C>T) E21D (5167G>T) I37P (5213A>C 5214T>C 5215T>G) G41S (5225G>A) E48N (5246G>A 5248A>C) A55E (5268C>A) V83I (5352G>A) A89V (5371C>T 5372A>G)
Codon mutations:
CAA8CAG (5128A>G) CAC15TAC (5147C>T) GAG21GAT (5167G>T) ATT37CCG (5213A>C 5214T>C 5215T>G) GGC41AGC (5225G>A) GGG43GGA (5233G>A) GAA48AAC (5246G>A 5248A>C) ACT49ACC (5251T>C) GCA55GAA (5268C>A) GTG57GTT (5275G>T) GAA58GAG (5278A>G) GCC59GCA (5281C>A) AGA62AGG (5290A>G) ATT63ATA (5293T>A) CTG64TTG (5294C>T) CTG67CTA (5305G>A) TGT76TGC (5333T>C) CGA77CGT (5336A>T) GTT83ATT (5352G>A) AGG87AGA (5366G>A) GCA89GTG (5371C>T 5372A>G) GCC93GCT (5384C>T) TAG97TAA (5396G>A)
187100%52775.4%87 (100%)62 (71.3%)0/0/0/00
Protein mutations:
P3L (5384C>T) R7N (5396G>A 5397A>T) E9D (5403G>T) K12N (5412G>C) K19T (5432A>C) A21P (5437G>C) N24R (5447A>G 5448T>A) K29Q (5461A>C) Q35Y (5479C>T 5481A>C) V36W (5482G>T 5483T>G 5484T>G) I39T (5492T>C) A42G (5501C>G) R56P (5543G>C) A58T (5548G>A) H59P (5552A>C) N61S (5558A>G) T64I (5567C>T 5568T>A) A67D (5576C>A) S68F (5579C>T) L69V (5581C>G) S70P (5584T>C) T74I (7930C>T 7931C>A) P77A (7938C>G) D80N (7947G>A) *87S (7969A>C)
Codon mutations:
CCA3CTA (5384C>T) AGA7AAT (5396G>A 5397A>T) CTA8TTA (5398C>T) GAG9GAT (5403G>T) AAG12AAC (5412G>C) AGT16AGC (5424T>C) AAA19ACA (5432A>C) GCT21CCT (5437G>C) AAT24AGA (5447A>G 5448T>A) TGC25TGT (5451C>T) AAG29CAG (5461A>C) TGC34TGT (5478C>T) CAA35TAC (5479C>T 5481A>C) GTT36TGG (5482G>T 5483T>G 5484T>G) TGT37TGC (5487T>C) TTC38TTT (5490C>T) ATA39ACA (5492T>C) ACA40ACG (5496A>G) AAA41AAG (5499A>G) GCC42GGC (5501C>G) CGA56CCA (5543G>C) GCT58ACT (5548G>A) CAT59CCT (5552A>C) CAG60CAA (5556G>A) AAC61AGC (5558A>G) ACT64ATA (5567C>T 5568T>A) GCT67GAT (5576C>A) TCT68TTT (5579C>T) CTA69GTA (5581C>G) TCA70CCA (5584T>C) ACC74ATA (7930C>T 7931C>A) CCC77GCC (7938C>G) GAC80AAC (7947G>A) TAG87TCG (7969A>C)
1117100%61074.9%117 (100%)87 (74.4%)0/0/0/01
Protein mutations:
E10Q (5543G>C) I13L (5552A>C) R14K (5556G>A) T15A (5558A>G) L18Y (5567C>T 5568T>A) L21I (5576C>A) P28Y (7930C>T 7931C>A) N30K (7938C>G) E47A (7988A>C 7989G>A) H53R (8006A>G) S54E (8008T>G 8009C>A) I59F (8023A>T 8025C>T) G61S (8029G>A) T62S (8032A>T) Y63C (8036A>G 8037T>C) S67P (8047T>C) T82H (8092A>C 8093C>A) L83I (8095C>A) D84N (8098G>A) N86S (8105A>G) T91Q (8119A>C 8120C>A 8121T>G) S92G (8122T>G 8123C>G 8124T>G) G93A (8126G>C 8127G>T) T94E (8128A>G 8129C>A) Q95E (8131C>G) P100S (8146C>T) L103S (8156T>C 8157G>T) V104G (8159T>G) P107H (8168C>A 8169T>C) E111G (8180A>G)
Codon mutations:
GAA10CAA (5543G>C) GAG11GAA (5548G>A) ATC13CTC (5552A>C) AGA14AAA (5556G>A) ACA15GCA (5558A>G) CTC18TAC (5567C>T 5568T>A) CTT21ATT (5576C>A) CTC22TTG (5579C>T 5581C>G) TAT23TAC (5584T>C) CCT28TAT (7930C>T 7931C>A) AAC30AAG (7938C>G) GGG33GGA (7947G>A) AGA41CGA (7969A>C) AGA43AGG (7977A>G) GAG47GCA (7988A>C 7989G>A) AGA48AGG (7992A>G) CAG49CAA (7995G>A) CAT53CGT (8006A>G) TCG54GAG (8008T>G 8009C>A) AGT56AGC (8016T>C) ATC59TTT (8023A>T 8025C>T) GGC61AGC (8029G>A) ACT62TCT (8032A>T) TAT63TGC (8036A>G 8037T>C) TCT67CCT (8047T>C) GAG69GAA (8055G>A) CCA76CCG (8076A>G) CCG77CCA (8079G>A) ACT82CAT (8092A>C 8093C>A) CTT83ATT (8095C>A) GAT84AAT (8098G>A) TGT85TGC (8103T>C) AAC86AGC (8105A>G) ACT91CAG (8119A>C 8120C>A 8121T>G) TCT92GGG (8122T>G 8123C>G 8124T>G) GGG93GCT (8126G>C 8127G>T) ACG94GAG (8128A>G 8129C>A) CAG95GAG (8131C>G) CCT100TCT (8146C>T) TTG103TCT (8156T>C 8157G>T) GTG104GGG (8159T>G) CCT107CAC (8168C>A 8169T>C) GAG111GGG (8180A>G)
183100%31458.1%82 (98.8%)46 (55.4%)0/1/0/01
Protein mutations:
Q2S (5611C>T 5612A>C) P3N (5614C>A 5615C>A) I4L (5617A>T 5619A>G) P5L (5620C>T 5621C>T) I6A (5623A>G 5624T>C) V7I (5626G>A) A8G (5630C>G 5631A>C) V10A (5636T>C) V13I (5644G>A) I16L (5653A>C) A19T (5662G>A) S24T (5677T>A 5679C>T) V26A (5684T>C) I27Y (5686A>T 5687T>A 5688C>T) I33L (5704A>C 5706A>G) L34V (5707T>G) D40N (5725G>A 5727C>T) I43Y (5734A>T 5735T>A) D44K (5737G>A 5739T>A) L46I (5743C>A) I47S (5747T>G 5748A>C) E60D (5787A>T) I61A (5788A>G 5789T>C) S62E (5791T>G 5792C>A 5793A>G) A63E (5795C>A) V65A (5801T>C 5802G>A) E66A (5804A>C 5805G>A) M67L (5806A>C 5808G>T) V69del (5813_5815delTGG) M71V (5818A>G) H73P (5825A>C 5826C>T) H74F (5827C>T 5828A>T) A75I (5830G>A 5831C>T) W77G (5836T>G) V79I (5842G>A) D80N (5845G>A) D81N (5848G>A)
Codon mutations:
CAA2TCA (5611C>T 5612A>C) CCT3AAT (5614C>A 5615C>A) ATA4TTG (5617A>T 5619A>G) CCA5TTA (5620C>T 5621C>T) ATA6GCA (5623A>G 5624T>C) GTA7ATA (5626G>A) GCA8GGC (5630C>G 5631A>C) GTA10GCA (5636T>C) GTA13ATA (5644G>A) ATA16CTA (5653A>C) GCA19ACA (5662G>A) TCC24ACT (5677T>A 5679C>T) GTA26GCA (5684T>C) ATC27TAT (5686A>T 5687T>A 5688C>T) ATA33CTG (5704A>C 5706A>G) TTA34GTA (5707T>G) AGA35AGG (5712A>G) GAC40AAT (5725G>A 5727C>T) ATT43TAT (5734A>T 5735T>A) GAT44AAA (5737G>A 5739T>A) CTA46ATA (5743C>A) ATA47AGC (5747T>G 5748A>C) GAA58GAG (5781A>G) GGA59GGG (5784A>G) GAA60GAT (5787A>T) ATA61GCA (5788A>G 5789T>C) TCA62GAG (5791T>G 5792C>A 5793A>G) GCA63GAA (5795C>A) CTT64TTG (5797C>T 5799T>G) GTG65GCA (5801T>C 5802G>A) GAG66GCA (5804A>C 5805G>A) ATG67CTT (5806A>C 5808G>T) GTG69del (5813_5815delTGG) GAG70GAA (5813_5815delTGG 5817G>A) ATG71GTG (5818A>G) CAC73CCT (5825A>C 5826C>T) CAT74TTT (5827C>T 5828A>T) GCT75ATT (5830G>A 5831C>T) TGG77GGG (5836T>G) GAT78GAC (5841T>C) GTT79ATT (5842G>A) GAT80AAT (5845G>A) GAT81AAT (5848G>A) TAG83TAA (5856G>A)
1857100%461776.9%843 (97.9%)632 (73.4%)4/14/0/01
Protein mutations:
K4R (5781A>G) E5G (5784A>G) K6M (5787A>T 5788A>G) Y7Q (5789T>C 5791T>G) Q8R (5792C>A 5793A>G) H9N (5795C>A 5797C>T) L10W (5799T>G) W11Q (5801T>C 5802G>A) R12H (5804A>C 5805G>A 5806A>C) W13L (5808G>T) W15del (5813_5815delTGG) R16K (5817G>A 5818A>G) T19L (5825A>C 5826C>T 5827C>T) M20L (5828A>T 5830G>A) L21F (5831C>T) M24T (5841T>C 5842G>A) M26I (5848G>A) S29N (5856G>A) T31A (5861A>G) K33N (5869A>C) A60S (5948G>T) D62E (5956T>A) T63K (5958C>A) V65A (5964T>C) V87E (6030T>A) N92R (6045A>G 6046T>G) K97E (6059A>G) D99N (6065G>A) E106T (6086G>A 6087A>C 6088G>A) S128T (6153G>C) K130D (6158A>G 6160G>T) T132S (6165C>G) D133N (6167G>A 6169T>C) L134I (6170T>A 6172G>T) L134_K135insA (6172_6173insGCC) K135I (6174A>T 6175G>C) D137G (6180A>G 6181T>C) T140D (6188A>G 6189C>A) N141T (6192A>C) S142I (6195G>T) S143A (6197A>G 6198G>C 6199T>C) S144I (6201G>T) G145N (6203G>A 6204G>A 6205G>T) R146D (6206A>G 6207G>A 6208A>C) M147T (6210T>C 6211G>T) I148L (6212A>C 6214A>G) M149K (6216T>A) K151D (6221A>G 6223A>T) G152P (6224G>C 6225G>C) E153_I154insA (6229_6230insGCA) K155Q (6233A>C) I161T (6252T>C 6253C>A) S162T (6255G>C) T163A (6257A>G) S164E (6260A>G 6261G>A 6262C>A) G167D (6270G>A) V169Q (6275G>C 6276T>A) Q170L (6279A>T) E172V (6285A>T) Y173Q (6287T>C 6289T>G) F175L (6293T>C) I182V (6314A>G) P183Q (6318C>A) D185N (6323G>A 6325T>C) N186K (6328T>G) D187_T188insD (6331_6332insGAC) T188N (6333C>A) T189R (6336C>G 6337C>A) S190T (6339G>C 6340C>A) K192R (6345A>G 6346G>A) T194I (6351C>T) S195N (6354G>A) N197D (6359A>G 6361C>T) V200T (6368G>A 6369T>C) F210W (6399T>G 6400T>G) E211D (6403G>T) F223Y (6438T>A) N230E (6458A>G 6460T>G) T232N (6465C>A 6466G>T) N234T (6471A>C 6472T>A) P238S (6482C>T) T240K (6489C>A 6490A>G) R252K (6525G>A 6526G>A) E268G (6573A>G) V270I (6578G>A) V275Q (6593G>C 6594T>A 6595C>A) F277I (6599T>A) T278S (6602A>T 6604G>A) Q287H (6631G>C) T290E (6638A>G 6639C>A) E293Q (6647G>C 6649A>G) R308S (6692C>T 6693G>C) I309L (6695A>T 6697C>A) Q310_R311del (6698_6703delCAGAGA) A316V (6717C>T) V318Y (6722G>T 6723T>A) I320T (6729T>C) K322E (6734A>G) I323_G324insI (6739_6740insATA) N325D (6743A>G 6745T>C) M326I (6748G>C) Q328K (6752C>A 6754A>G) I333V (6767A>G) R335G (6773A>G) A336T (6776G>A) K337Q (6779A>C) N339R (6786A>G 6787T>G) K343A (6797A>G 6798A>C) Q344K (6800C>A) I345V (6803A>G) A346K (6806G>A 6807C>A 6808T>G) S347A (6809A>G 6810G>C 6811C>A) R350G (6818A>G 6820A>G) E351S (6821G>T 6822A>C 6823A>T) Q352Y (6824C>T 6826A>T) G354del (6830_6832delGGA) N355P (6833A>C 6834A>C) K357A (6839A>G 6840A>C) I360K (6849T>A 6850C>A) K362N (6856G>C) Q363S (6857C>T 6858A>C) P369L (6876C>T) V372T (6884G>A 6885T>C) T373R (6888C>G) S375N (6894G>A) G379M (6905G>A 6906G>T 6907A>G) S387T (6929T>A) T388D (6932A>G 6933C>A 6934A>T) Q389E (6935C>G) S393D (6947A>G 6948G>A 6949T>C) W395K (6953T>A 6954G>A 6955G>A) S398_N406del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) N407D (6989A>G) E409G (6996A>G) G410F (6998G>T 6999G>T 7000A>C) S411N (7002G>A) D412G (7005A>G) I424V (7040A>G 7042A>G) K429E (7055A>G) K432R (7064A>C 7065A>G) P437N (7079C>A 7080C>A) S440A (7088A>G 7089G>C 7090T>A) Q442T (7094C>A 7095A>C) R444T (7101G>C 7102A>C) S446N (7106T>A 7107C>A 7108A>C) N460L (7148A>C 7149A>T 7150T>G) S461N (7152G>A 7153C>T) N463T (7158A>C) E464del (7160G>A 7162_7164delGTC) S465N (7162_7164delGTC 7165C>T) D474N (7190G>A) R476K (7197G>A 7198G>A) K490E (7238A>G) R504Q (7280A>C 7281G>A) Q507K (7289C>A) K510R (7299A>G) I515L (7313A>C) M535I (7375G>A) N553S (7428A>G) I580V (7508A>G) I595L (7553A>C) A607N (7589G>A 7590C>A) A612S (7604G>T) Q621E (7631C>G) N624G (7640A>G 7641A>G 7642T>G) H625N (7643C>A) T626M (7647C>T) D632E (7666C>A) R633K (7668G>A) I635V (7673A>G) N636S (7677A>G) T639S (7685A>T) S640K (7689G>A 7690C>A) L641E (7691T>G 7692T>A) H643Y (7697C>T) S644R (7700T>A 7701C>G 7702C>G) E648D (7714A>C) E662A (7755A>C) N674D (7790A>G) T676S (7796A>T) N677Q (7799A>C 7801T>A) L684I (7820T>A) V693I (7847G>A) A700T (7868G>A) Q710K (7898C>A) L721I (7931C>A) T723S (7938C>G) G726E (7947G>A) E736G (7977A>G) R740Q (7988A>C 7989G>A) D741G (7992A>G) R742K (7995G>A) I746V (8006A>G 8008T>G) V749A (8016T>C) S752F (8025C>T) I756A (8036A>G 8037T>C) S762N (8055G>A) H769R (8076A>G) R770H (8079G>A) L774F (8092A>C) L775I (8093C>A 8095C>A) V778A (8103T>C) T779A (8105A>G) E783D (8119A>C) L784R (8120C>A 8121T>G 8122T>G) L785G (8123C>G 8124T>G) G786L (8126G>C 8127G>T 8128A>G) W796L (8156T>C 8157G>T) W797G (8159T>G) L800T (8168C>A 8169T>C) S804G (8180A>G) V812I (8204G>A) G825W (8243G>T) V832A (8265T>C 8266A>T) V833L (8267G>T 8269A>G) G835R (8273G>A) C837G (8279T>G) R841L (8292G>T) H842N (8294C>A) I854A (8330A>G 8331T>C)
Codon mutations:
AAG4AGG (5781A>G) GAG5GGG (5784A>G) AAA6ATG (5787A>T 5788A>G) TAT7CAG (5789T>C 5791T>G) CAG8AGG (5792C>A 5793A>G) CAC9AAT (5795C>A 5797C>T) TTG10TGG (5799T>G) TGG11CAG (5801T>C 5802G>A) AGA12CAC (5804A>C 5805G>A 5806A>C) TGG13TTG (5808G>T) TGG15del (5813_5815delTGG) AGA16AAG (5817G>A 5818A>G) ACC19CTT (5825A>C 5826C>T 5827C>T) ATG20TTA (5828A>T 5830G>A) CTC21TTC (5831C>T) CTT22CTG (5836T>G) ATG24ACA (5841T>C 5842G>A) TTG25TTA (5845G>A) ATG26ATA (5848G>A) AGT29AAT (5856G>A) ACA31GCA (5861A>G) AAA33AAC (5869A>C) TTG34TTA (5872G>A) GTC36GTT (5878C>T) AAG46AAA (5908G>A) ACC50ACT (5920C>T) TTT53TTC (5929T>C) GCA60TCA (5948G>T) GAT62GAA (5956T>A) ACA63AAA (5958C>A) GTA65GCA (5964T>C) GTT68GTC (5974T>C) GCC70GCT (5980C>T) GCC73GCT (5989C>T) GAC78GAT (6004C>T) AAC80AAT (6010C>T) GTA85GTT (6025A>T) TTG86CTG (6026T>C) GTA87GAA (6030T>A) GTG89GTA (6037G>A) AAT92AGG (6045A>G 6046T>G) AAC94AAT (6052C>T) AAA97GAA (6059A>G) GAC99AAC (6065G>A) CAG103CAA (6079G>A) GAG106ACA (6086G>A 6087A>C 6088G>A) GTA120GTG (6130A>G) AAA121AAG (6133A>G) AGT128ACT (6153G>C) AAG130GAT (6158A>G 6160G>T) TGC131TGT (6163C>T) ACT132AGT (6165C>G) GAT133AAC (6167G>A 6169T>C) TTG134ATT (6170T>A 6172G>T) TTG134_AAG135insGCC (6172_6173insGCC) AAG135ATC (6174A>T 6175G>C) GAT137GGC (6180A>G 6181T>C) ACT138ACC (6184T>C) ACC140GAC (6188A>G 6189C>A) AAT141ACT (6192A>C) AGT142ATT (6195G>T) AGT143GCC (6197A>G 6198G>C 6199T>C) AGC144ATC (6201G>T) GGG145AAT (6203G>A 6204G>A 6205G>T) AGA146GAC (6206A>G 6207G>A 6208A>C) ATG147ACT (6210T>C 6211G>T) ATA148CTG (6212A>C 6214A>G) ATG149AAG (6216T>A) GAG150GAA (6220G>A) AAA151GAT (6221A>G 6223A>T) GGA152CCA (6224G>C 6225G>C) GAG153_ATA154insGCA (6229_6230insGCA) AAA155CAA (6233A>C) TGC157TGT (6241C>T) ATC161ACA (6252T>C 6253C>A) AGC162ACC (6255G>C) ACA163GCA (6257A>G) AGC164GAA (6260A>G 6261G>A 6262C>A) GGT167GAT (6270G>A) GTG169CAG (6275G>C 6276T>A) CAG170CTG (6279A>T) GAA172GTA (6285A>T) TAT173CAG (6287T>C 6289T>G) TTT175CTT (6293T>C) ATA182GTA (6314A>G) CCA183CAA (6318C>A) ATA184ATC (6322A>C) GAT185AAC (6323G>A 6325T>C) AAT186AAG (6328T>G) GAT187_ACT188insGAC (6331_6332insGAC) ACT188AAT (6333C>A) ACC189AGA (6336C>G 6337C>A) AGC190ACA (6339G>C 6340C>A) TAT191TAC (6343T>C) AAG192AGA (6345A>G 6346G>A) TTG193CTA (6347T>C 6349G>A) ACA194ATA (6351C>T) AGT195AAT (6354G>A) AAC197GAT (6359A>G 6361C>T) GTC200ACC (6368G>A 6369T>C) GCC204GCT (6382C>T) TCC209TCT (6397C>T) TTT210TGG (6399T>G 6400T>G) GAG211GAT (6403G>T) GCC219GCT (6427C>T) CCG220CCA (6430G>A) TTT223TAT (6438T>A) AAA227AAG (6451A>G) AAT230GAG (6458A>G 6460T>G) AAG231AAA (6463G>A) ACG232AAT (6465C>A 6466G>T) AAT234ACA (6471A>C 6472T>A) GGA235GGG (6475A>G) GGA237GGG (6481A>G) CCA238TCA (6482C>T) TGT239TGC (6487T>C) ACA240AAG (6489C>A 6490A>G) AGC243AGT (6499C>T) AGG252AAA (6525G>A 6526G>A) GTA254GTG (6532A>G) TCA256TCC (6538A>C) CTG259TTG (6545C>T) CTG260TTG (6548C>T) AGT264AGC (6562T>C) GAA268GGA (6573A>G) GTA270ATA (6578G>A) ATT272ATC (6586T>C) GTC275CAA (6593G>C 6594T>A 6595C>A) TTC277ATC (6599T>A) ACG278TCA (6602A>T 6604G>A) GAC279GAT (6607C>T) GCT281GCA (6613T>A) GTA286GTG (6628A>G) CAG287CAC (6631G>C) CTG288CTT (6634G>T) AAC289AAT (6637C>T) ACA290GAA (6638A>G 6639C>A) GAA293CAG (6647G>C 6649A>G) ATC307ATA (6691C>A) CGT308TCT (6692C>T 6693G>C) ATC309TTA (6695A>T 6697C>A) CAG310_AGA311del (6698_6703delCAGAGA) GGG314GGA (6712G>A) AGA315CGA (6713A>C) GCA316GTA (6717C>T) GTT318TAT (6722G>T 6723T>A) ATA320ACA (6729T>C) AAA322GAA (6734A>G) ATA323_GGA324insATA (6739_6740insATA) AAT325GAC (6743A>G 6745T>C) ATG326ATC (6748G>C) CAA328AAG (6752C>A 6754A>G) ATT333GTT (6767A>G) AGA335GGA (6773A>G) GCA336ACA (6776G>A) AAA337CAA (6779A>C) AAT339AGG (6786A>G 6787T>G) ACT341ACG (6793T>G) AAA343GCA (6797A>G 6798A>C) CAG344AAG (6800C>A) ATA345GTA (6803A>G) GCT346AAG (6806G>A 6807C>A 6808T>G) AGC347GCA (6809A>G 6810G>C 6811C>A) AAA348AAG (6814A>G) AGA350GGG (6818A>G 6820A>G) GAA351TCT (6821G>T 6822A>C 6823A>T) CAA352TAT (6824C>T 6826A>T) TTT353TTC (6829T>C) GGA354del (6830_6832delGGA) AAT355CCT (6833A>C 6834A>C) AAA357GCA (6839A>G 6840A>C) ATC360AAA (6849T>A 6850C>A) AAG362AAC (6856G>C) CAA363TCA (6857C>T 6858A>C) CCA369CTA (6876C>T) GTA372ACA (6884G>A 6885T>C) ACG373AGG (6888C>G) CAC374CAT (6892C>T) AGT375AAT (6894G>A) GGA379ATG (6905G>A 6906G>T 6907A>G) GGG380GGA (6910G>A) TCA387ACA (6929T>A) ACA388GAT (6932A>G 6933C>A 6934A>T) CAA389GAA (6935C>G) AGT393GAC (6947A>G 6948G>A 6949T>C) ACT394ACA (6952T>A) TGG395AAA (6953T>A 6954G>A 6955G>A) TTT396TTC (6958T>C) AGT398_AAT406del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) AAC407GAC (6989A>G) ACT408ACA (6994T>A) GAA409GGA (6996A>G) GGA410TTC (6998G>T 6999G>T 7000A>C) AGT411AAT (7002G>A) GAC412GGC (7005A>G) ACA413ACT (7009A>T) ACC415ACT (7015C>T) TGC418TGT (7024C>T) AGA419CGA (7025A>C) ATA424GTG (7040A>G 7042A>G) AAA429GAA (7055A>G) GTA430GTG (7060A>G) AAA432CGA (7064A>C 7065A>G) CCT437AAT (7079C>A 7080C>A) ATC439ATT (7087C>T) AGT440GCA (7088A>G 7089G>C 7090T>A) CAA442ACA (7094C>A 7095A>C) ATT443ATC (7099T>C) AGA444ACC (7101G>C 7102A>C) TCA446AAC (7106T>A 7107C>A 7108A>C) GGG451GGT (7123G>T) TTA454TTG (7132A>G) AAT460CTG (7148A>C 7149A>T 7150T>G) AGC461AAT (7152G>A 7153C>T) AAC462AAT (7156C>T) AAT463ACT (7158A>C) GAG464del (7160G>A 7162_7164delGTC) TCC465AAT (7162_7164delGTC 7165C>T) GGA471GGG (7183A>G) GAT474AAT (7190G>A) AGG476AAA (7197G>A 7198G>A) AAA490GAA (7238A>G) TTA494CTA (7250T>C) AAG502AAA (7276G>A) AGA504CAA (7280A>C 7281G>A) CAG507AAG (7289C>A) AAA510AGA (7299A>G) ATA515CTA (7313A>C) TTG518CTG (7322T>C) GCA526GCT (7348A>T) GCA532GCG (7366A>G) GCC533GCG (7369C>G) ATG535ATA (7375G>A) GGT547GGA (7411T>A) CAG550CAA (7420G>A) AAC553AGC (7428A>G) TTG555CTG (7433T>C) GAG560GAA (7450G>A) CAA567CAG (7471A>G) ATC573ATT (7489C>T) AAG574AAA (7492G>A) ATC580GTC (7508A>G) CTG593CTA (7549G>A) ATT595CTT (7553A>C) GGT597GGC (7561T>C) ATT603ATC (7579T>C) GCT607AAT (7589G>A 7590C>A) CCT609CCC (7597T>C) AAT611AAC (7603T>C) GCT612TCT (7604G>T) CTG619CTT (7627G>T) GAA620GAG (7630A>G) CAG621GAG (7631C>G) AAT624GGG (7640A>G 7641A>G 7642T>G) CAC625AAC (7643C>A) ACG626ATG (7647C>T) GAC632GAA (7666C>A) AGA633AAA (7668G>A) GAA634GAG (7672A>G) ATT635GTT (7673A>G) AAC636AGC (7677A>G) ACA639TCA (7685A>T) AGC640AAA (7689G>A 7690C>A) TTA641GAA (7691T>G 7692T>A) CAC643TAC (7697C>T) TCC644AGG (7700T>A 7701C>G 7702C>G) GAA648GAC (7714A>C) CAA650CAG (7720A>G) CAA653CAG (7729A>G) TTG661TTA (7753G>A) GAA662GCA (7755A>C) TTA663TTG (7759A>G) GAT664GAC (7762T>C) TTG669CTG (7775T>C) AAC674GAC (7790A>G) ACA676TCA (7796A>T) AAT677CAA (7799A>C 7801T>A) TTA684ATA (7820T>A) GTA693ATA (7847G>A) GGT694GGC (7852T>C) GCT700ACT (7868G>A) GTA701GTG (7873A>G) GTG705GTA (7885G>A) CAG710AAG (7898C>A) TAT712TAC (7906T>C) CCA714CCT (7912A>T) TTA715TTG (7915A>G) TCG716TCA (7918G>A) CAC720CAT (7930C>T) CTC721ATC (7931C>A) ACC723AGC (7938C>G) GGA726GAA (7947G>A) ATA733ATC (7969A>C) GAA736GGA (7977A>G) AGA740CAA (7988A>C 7989G>A) GAC741GGC (7992A>G) AGA742AAA (7995G>A) ATT746GTG (8006A>G 8008T>G) CGA747AGA (8009C>A) GTG749GCG (8016T>C) GGA751GGT (8023A>T) TCC752TTC (8025C>T) TTG753TTA (8029G>A) GCA754GCT (8032A>T) ATC756GCC (8036A>G 8037T>C) GAT759GAC (8047T>C) AGC762AAC (8055G>A) CAC769CGC (8076A>G) CGC770CAC (8079G>A) TTA774TTC (8092A>C) CTC775ATA (8093C>A 8095C>A) TTG776TTA (8098G>A) GTA778GCA (8103T>C) ACG779GCG (8105A>G) GAA783GAC (8119A>C) CTT784AGG (8120C>A 8121T>G 8122T>G) CTG785GGG (8123C>G 8124T>G) GGA786CTG (8126G>C 8127G>T 8128A>G) CGC787AGG (8129C>A 8131C>G) GCC792GCT (8146C>T) TGG796CTG (8156T>C 8157G>T) TGG797GGG (8159T>G) CTA800ACA (8168C>A 8169T>C) AGT804GGT (8180A>G) AGT810AGC (8200T>C) GTT812ATT (8204G>A) CTC815CTT (8215C>T) GCC819GCA (8227C>A) GGG825TGG (8243G>T) AGG828AGA (8254G>A) GTA832GCT (8265T>C 8266A>T) GTA833TTG (8267G>T 8269A>G) GGA835AGA (8273G>A) TGT837GGT (8279T>G) CGC841CTC (8292G>T) CAC842AAC (8294C>A) ATT854GCT (8330A>G 8331T>C) CTA856TTA (8336C>T)
128100%9040.9%27 (96.4%)11 (39.3%)0/1/0/00
Protein mutations:
K4R (5781A>G) E5G (5784A>G) K6M (5787A>T 5788A>G) Y7Q (5789T>C 5791T>G) Q8R (5792C>A 5793A>G) H9N (5795C>A 5797C>T) L10W (5799T>G) W11Q (5801T>C 5802G>A) R12H (5804A>C 5805G>A 5806A>C) W13L (5808G>T) W15del (5813_5815delTGG) R16K (5817G>A 5818A>G) T19L (5825A>C 5826C>T 5827C>T) M20L (5828A>T 5830G>A) L21F (5831C>T) M24T (5841T>C 5842G>A) M26I (5848G>A)
Codon mutations:
AAG4AGG (5781A>G) GAG5GGG (5784A>G) AAA6ATG (5787A>T 5788A>G) TAT7CAG (5789T>C 5791T>G) CAG8AGG (5792C>A 5793A>G) CAC9AAT (5795C>A 5797C>T) TTG10TGG (5799T>G) TGG11CAG (5801T>C 5802G>A) AGA12CAC (5804A>C 5805G>A 5806A>C) TGG13TTG (5808G>T) TGG15del (5813_5815delTGG) AGA16AAG (5817G>A 5818A>G) ACC19CTT (5825A>C 5826C>T 5827C>T) ATG20TTA (5828A>T 5830G>A) CTC21TTC (5831C>T) CTT22CTG (5836T>G) ATG24ACA (5841T>C 5842G>A) TTG25TTA (5845G>A) ATG26ATA (5848G>A)
1483100%249574.9%470 (96.5%)339 (69.6%)4/13/0/00
Protein mutations:
S1N (5856G>A) T3A (5861A>G) K5N (5869A>C) A32S (5948G>T) D34E (5956T>A) T35K (5958C>A) V37A (5964T>C) V59E (6030T>A) N64R (6045A>G 6046T>G) K69E (6059A>G) D71N (6065G>A) E78T (6086G>A 6087A>C 6088G>A) S100T (6153G>C) K102D (6158A>G 6160G>T) T104S (6165C>G) D105N (6167G>A 6169T>C) L106I (6170T>A 6172G>T) L106_K107insA (6172_6173insGCC) K107I (6174A>T 6175G>C) D109G (6180A>G 6181T>C) T112D (6188A>G 6189C>A) N113T (6192A>C) S114I (6195G>T) S115A (6197A>G 6198G>C 6199T>C) S116I (6201G>T) G117N (6203G>A 6204G>A 6205G>T) R118D (6206A>G 6207G>A 6208A>C) M119T (6210T>C 6211G>T) I120L (6212A>C 6214A>G) M121K (6216T>A) K123D (6221A>G 6223A>T) G124P (6224G>C 6225G>C) E125_I126insA (6229_6230insGCA) K127Q (6233A>C) I133T (6252T>C 6253C>A) S134T (6255G>C) T135A (6257A>G) S136E (6260A>G 6261G>A 6262C>A) G139D (6270G>A) V141Q (6275G>C 6276T>A) Q142L (6279A>T) E144V (6285A>T) Y145Q (6287T>C 6289T>G) F147L (6293T>C) I154V (6314A>G) P155Q (6318C>A) D157N (6323G>A 6325T>C) N158K (6328T>G) D159_T160insD (6331_6332insGAC) T160N (6333C>A) T161R (6336C>G 6337C>A) S162T (6339G>C 6340C>A) K164R (6345A>G 6346G>A) T166I (6351C>T) S167N (6354G>A) N169D (6359A>G 6361C>T) V172T (6368G>A 6369T>C) F182W (6399T>G 6400T>G) E183D (6403G>T) F195Y (6438T>A) N202E (6458A>G 6460T>G) T204N (6465C>A 6466G>T) N206T (6471A>C 6472T>A) P210S (6482C>T) T212K (6489C>A 6490A>G) R224K (6525G>A 6526G>A) E240G (6573A>G) V242I (6578G>A) V247Q (6593G>C 6594T>A 6595C>A) F249I (6599T>A) T250S (6602A>T 6604G>A) Q259H (6631G>C) T262E (6638A>G 6639C>A) E265Q (6647G>C 6649A>G) R280S (6692C>T 6693G>C) I281L (6695A>T 6697C>A) Q282_R283del (6698_6703delCAGAGA) A288V (6717C>T) V290Y (6722G>T 6723T>A) I292T (6729T>C) K294E (6734A>G) I295_G296insI (6739_6740insATA) N297D (6743A>G 6745T>C) M298I (6748G>C) Q300K (6752C>A 6754A>G) I305V (6767A>G) R307G (6773A>G) A308T (6776G>A) K309Q (6779A>C) N311R (6786A>G 6787T>G) K315A (6797A>G 6798A>C) Q316K (6800C>A) I317V (6803A>G) A318K (6806G>A 6807C>A 6808T>G) S319A (6809A>G 6810G>C 6811C>A) R322G (6818A>G 6820A>G) E323S (6821G>T 6822A>C 6823A>T) Q324Y (6824C>T 6826A>T) G326del (6830_6832delGGA) N327P (6833A>C 6834A>C) K329A (6839A>G 6840A>C) I332K (6849T>A 6850C>A) K334N (6856G>C) Q335S (6857C>T 6858A>C) P341L (6876C>T) V344T (6884G>A 6885T>C) T345R (6888C>G) S347N (6894G>A) G351M (6905G>A 6906G>T 6907A>G) S359T (6929T>A) T360D (6932A>G 6933C>A 6934A>T) Q361E (6935C>G) S365D (6947A>G 6948G>A 6949T>C) W367K (6953T>A 6954G>A 6955G>A) S370_N378del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) N379D (6989A>G) E381G (6996A>G) G382F (6998G>T 6999G>T 7000A>C) S383N (7002G>A) D384G (7005A>G) I396V (7040A>G 7042A>G) K401E (7055A>G) K404R (7064A>C 7065A>G) P409N (7079C>A 7080C>A) S412A (7088A>G 7089G>C 7090T>A) Q414T (7094C>A 7095A>C) R416T (7101G>C 7102A>C) S418N (7106T>A 7107C>A 7108A>C) N432L (7148A>C 7149A>T 7150T>G) S433N (7152G>A 7153C>T) N435T (7158A>C) E436del (7160G>A 7162_7164delGTC) S437N (7162_7164delGTC 7165C>T) D446N (7190G>A) R448K (7197G>A 7198G>A) K462E (7238A>G) R476Q (7280A>C 7281G>A) Q479K (7289C>A) K482R (7299A>G)
Codon mutations:
AGT1AAT (5856G>A) ACA3GCA (5861A>G) AAA5AAC (5869A>C) TTG6TTA (5872G>A) GTC8GTT (5878C>T) AAG18AAA (5908G>A) ACC22ACT (5920C>T) TTT25TTC (5929T>C) GCA32TCA (5948G>T) GAT34GAA (5956T>A) ACA35AAA (5958C>A) GTA37GCA (5964T>C) GTT40GTC (5974T>C) GCC42GCT (5980C>T) GCC45GCT (5989C>T) GAC50GAT (6004C>T) AAC52AAT (6010C>T) GTA57GTT (6025A>T) TTG58CTG (6026T>C) GTA59GAA (6030T>A) GTG61GTA (6037G>A) AAT64AGG (6045A>G 6046T>G) AAC66AAT (6052C>T) AAA69GAA (6059A>G) GAC71AAC (6065G>A) CAG75CAA (6079G>A) GAG78ACA (6086G>A 6087A>C 6088G>A) GTA92GTG (6130A>G) AAA93AAG (6133A>G) AGT100ACT (6153G>C) AAG102GAT (6158A>G 6160G>T) TGC103TGT (6163C>T) ACT104AGT (6165C>G) GAT105AAC (6167G>A 6169T>C) TTG106ATT (6170T>A 6172G>T) TTG106_AAG107insGCC (6172_6173insGCC) AAG107ATC (6174A>T 6175G>C) GAT109GGC (6180A>G 6181T>C) ACT110ACC (6184T>C) ACC112GAC (6188A>G 6189C>A) AAT113ACT (6192A>C) AGT114ATT (6195G>T) AGT115GCC (6197A>G 6198G>C 6199T>C) AGC116ATC (6201G>T) GGG117AAT (6203G>A 6204G>A 6205G>T) AGA118GAC (6206A>G 6207G>A 6208A>C) ATG119ACT (6210T>C 6211G>T) ATA120CTG (6212A>C 6214A>G) ATG121AAG (6216T>A) GAG122GAA (6220G>A) AAA123GAT (6221A>G 6223A>T) GGA124CCA (6224G>C 6225G>C) GAG125_ATA126insGCA (6229_6230insGCA) AAA127CAA (6233A>C) TGC129TGT (6241C>T) ATC133ACA (6252T>C 6253C>A) AGC134ACC (6255G>C) ACA135GCA (6257A>G) AGC136GAA (6260A>G 6261G>A 6262C>A) GGT139GAT (6270G>A) GTG141CAG (6275G>C 6276T>A) CAG142CTG (6279A>T) GAA144GTA (6285A>T) TAT145CAG (6287T>C 6289T>G) TTT147CTT (6293T>C) ATA154GTA (6314A>G) CCA155CAA (6318C>A) ATA156ATC (6322A>C) GAT157AAC (6323G>A 6325T>C) AAT158AAG (6328T>G) GAT159_ACT160insGAC (6331_6332insGAC) ACT160AAT (6333C>A) ACC161AGA (6336C>G 6337C>A) AGC162ACA (6339G>C 6340C>A) TAT163TAC (6343T>C) AAG164AGA (6345A>G 6346G>A) TTG165CTA (6347T>C 6349G>A) ACA166ATA (6351C>T) AGT167AAT (6354G>A) AAC169GAT (6359A>G 6361C>T) GTC172ACC (6368G>A 6369T>C) GCC176GCT (6382C>T) TCC181TCT (6397C>T) TTT182TGG (6399T>G 6400T>G) GAG183GAT (6403G>T) GCC191GCT (6427C>T) CCG192CCA (6430G>A) TTT195TAT (6438T>A) AAA199AAG (6451A>G) AAT202GAG (6458A>G 6460T>G) AAG203AAA (6463G>A) ACG204AAT (6465C>A 6466G>T) AAT206ACA (6471A>C 6472T>A) GGA207GGG (6475A>G) GGA209GGG (6481A>G) CCA210TCA (6482C>T) TGT211TGC (6487T>C) ACA212AAG (6489C>A 6490A>G) AGC215AGT (6499C>T) AGG224AAA (6525G>A 6526G>A) GTA226GTG (6532A>G) TCA228TCC (6538A>C) CTG231TTG (6545C>T) CTG232TTG (6548C>T) AGT236AGC (6562T>C) GAA240GGA (6573A>G) GTA242ATA (6578G>A) ATT244ATC (6586T>C) GTC247CAA (6593G>C 6594T>A 6595C>A) TTC249ATC (6599T>A) ACG250TCA (6602A>T 6604G>A) GAC251GAT (6607C>T) GCT253GCA (6613T>A) GTA258GTG (6628A>G) CAG259CAC (6631G>C) CTG260CTT (6634G>T) AAC261AAT (6637C>T) ACA262GAA (6638A>G 6639C>A) GAA265CAG (6647G>C 6649A>G) ATC279ATA (6691C>A) CGT280TCT (6692C>T 6693G>C) ATC281TTA (6695A>T 6697C>A) CAG282_AGA283del (6698_6703delCAGAGA) GGG286GGA (6712G>A) AGA287CGA (6713A>C) GCA288GTA (6717C>T) GTT290TAT (6722G>T 6723T>A) ATA292ACA (6729T>C) AAA294GAA (6734A>G) ATA295_GGA296insATA (6739_6740insATA) AAT297GAC (6743A>G 6745T>C) ATG298ATC (6748G>C) CAA300AAG (6752C>A 6754A>G) ATT305GTT (6767A>G) AGA307GGA (6773A>G) GCA308ACA (6776G>A) AAA309CAA (6779A>C) AAT311AGG (6786A>G 6787T>G) ACT313ACG (6793T>G) AAA315GCA (6797A>G 6798A>C) CAG316AAG (6800C>A) ATA317GTA (6803A>G) GCT318AAG (6806G>A 6807C>A 6808T>G) AGC319GCA (6809A>G 6810G>C 6811C>A) AAA320AAG (6814A>G) AGA322GGG (6818A>G 6820A>G) GAA323TCT (6821G>T 6822A>C 6823A>T) CAA324TAT (6824C>T 6826A>T) TTT325TTC (6829T>C) GGA326del (6830_6832delGGA) AAT327CCT (6833A>C 6834A>C) AAA329GCA (6839A>G 6840A>C) ATC332AAA (6849T>A 6850C>A) AAG334AAC (6856G>C) CAA335TCA (6857C>T 6858A>C) CCA341CTA (6876C>T) GTA344ACA (6884G>A 6885T>C) ACG345AGG (6888C>G) CAC346CAT (6892C>T) AGT347AAT (6894G>A) GGA351ATG (6905G>A 6906G>T 6907A>G) GGG352GGA (6910G>A) TCA359ACA (6929T>A) ACA360GAT (6932A>G 6933C>A 6934A>T) CAA361GAA (6935C>G) AGT365GAC (6947A>G 6948G>A 6949T>C) ACT366ACA (6952T>A) TGG367AAA (6953T>A 6954G>A 6955G>A) TTT368TTC (6958T>C) AGT370_AAT378del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) AAC379GAC (6989A>G) ACT380ACA (6994T>A) GAA381GGA (6996A>G) GGA382TTC (6998G>T 6999G>T 7000A>C) AGT383AAT (7002G>A) GAC384GGC (7005A>G) ACA385ACT (7009A>T) ACC387ACT (7015C>T) TGC390TGT (7024C>T) AGA391CGA (7025A>C) ATA396GTG (7040A>G 7042A>G) AAA401GAA (7055A>G) GTA402GTG (7060A>G) AAA404CGA (7064A>C 7065A>G) CCT409AAT (7079C>A 7080C>A) ATC411ATT (7087C>T) AGT412GCA (7088A>G 7089G>C 7090T>A) CAA414ACA (7094C>A 7095A>C) ATT415ATC (7099T>C) AGA416ACC (7101G>C 7102A>C) TCA418AAC (7106T>A 7107C>A 7108A>C) GGG423GGT (7123G>T) TTA426TTG (7132A>G) AAT432CTG (7148A>C 7149A>T 7150T>G) AGC433AAT (7152G>A 7153C>T) AAC434AAT (7156C>T) AAT435ACT (7158A>C) GAG436del (7160G>A 7162_7164delGTC) TCC437AAT (7162_7164delGTC 7165C>T) GGA443GGG (7183A>G) GAT446AAT (7190G>A) AGG448AAA (7197G>A 7198G>A) AAA462GAA (7238A>G) TTA466CTA (7250T>C) AAG474AAA (7276G>A) AGA476CAA (7280A>C 7281G>A) CAG479AAG (7289C>A) AAA482AGA (7299A>G)
1345100%203182.9%345 (100%)281 (81.4%)0/0/0/00
Protein mutations:
I4L (7313A>C) M24I (7375G>A) N42S (7428A>G) I69V (7508A>G) I84L (7553A>C) A96N (7589G>A 7590C>A) A101S (7604G>T) Q110E (7631C>G) N113G (7640A>G 7641A>G 7642T>G) H114N (7643C>A) T115M (7647C>T) D121E (7666C>A) R122K (7668G>A) I124V (7673A>G) N125S (7677A>G) T128S (7685A>T) S129K (7689G>A 7690C>A) L130E (7691T>G 7692T>A) H132Y (7697C>T) S133R (7700T>A 7701C>G 7702C>G) E137D (7714A>C) E151A (7755A>C) N163D (7790A>G) T165S (7796A>T) N166Q (7799A>C 7801T>A) L173I (7820T>A) V182I (7847G>A) A189T (7868G>A) Q199K (7898C>A) L210I (7931C>A) T212S (7938C>G) G215E (7947G>A) E225G (7977A>G) R229Q (7988A>C 7989G>A) D230G (7992A>G) R231K (7995G>A) I235V (8006A>G 8008T>G) V238A (8016T>C) S241F (8025C>T) I245A (8036A>G 8037T>C) S251N (8055G>A) H258R (8076A>G) R259H (8079G>A) L263F (8092A>C) L264I (8093C>A 8095C>A) V267A (8103T>C) T268A (8105A>G) E272D (8119A>C) L273R (8120C>A 8121T>G 8122T>G) L274G (8123C>G 8124T>G) G275L (8126G>C 8127G>T 8128A>G) W285L (8156T>C 8157G>T) W286G (8159T>G) L289T (8168C>A 8169T>C) S293G (8180A>G) V301I (8204G>A) G314W (8243G>T) V321A (8265T>C 8266A>T) V322L (8267G>T 8269A>G) G324R (8273G>A) C326G (8279T>G) R330L (8292G>T) H331N (8294C>A) I343A (8330A>G 8331T>C)
Codon mutations:
ATA4CTA (7313A>C) TTG7CTG (7322T>C) GCA15GCT (7348A>T) GCA21GCG (7366A>G) GCC22GCG (7369C>G) ATG24ATA (7375G>A) GGT36GGA (7411T>A) CAG39CAA (7420G>A) AAC42AGC (7428A>G) TTG44CTG (7433T>C) GAG49GAA (7450G>A) CAA56CAG (7471A>G) ATC62ATT (7489C>T) AAG63AAA (7492G>A) ATC69GTC (7508A>G) CTG82CTA (7549G>A) ATT84CTT (7553A>C) GGT86GGC (7561T>C) ATT92ATC (7579T>C) GCT96AAT (7589G>A 7590C>A) CCT98CCC (7597T>C) AAT100AAC (7603T>C) GCT101TCT (7604G>T) CTG108CTT (7627G>T) GAA109GAG (7630A>G) CAG110GAG (7631C>G) AAT113GGG (7640A>G 7641A>G 7642T>G) CAC114AAC (7643C>A) ACG115ATG (7647C>T) GAC121GAA (7666C>A) AGA122AAA (7668G>A) GAA123GAG (7672A>G) ATT124GTT (7673A>G) AAC125AGC (7677A>G) ACA128TCA (7685A>T) AGC129AAA (7689G>A 7690C>A) TTA130GAA (7691T>G 7692T>A) CAC132TAC (7697C>T) TCC133AGG (7700T>A 7701C>G 7702C>G) GAA137GAC (7714A>C) CAA139CAG (7720A>G) CAA142CAG (7729A>G) TTG150TTA (7753G>A) GAA151GCA (7755A>C) TTA152TTG (7759A>G) GAT153GAC (7762T>C) TTG158CTG (7775T>C) AAC163GAC (7790A>G) ACA165TCA (7796A>T) AAT166CAA (7799A>C 7801T>A) TTA173ATA (7820T>A) GTA182ATA (7847G>A) GGT183GGC (7852T>C) GCT189ACT (7868G>A) GTA190GTG (7873A>G) GTG194GTA (7885G>A) CAG199AAG (7898C>A) TAT201TAC (7906T>C) CCA203CCT (7912A>T) TTA204TTG (7915A>G) TCG205TCA (7918G>A) CAC209CAT (7930C>T) CTC210ATC (7931C>A) ACC212AGC (7938C>G) GGA215GAA (7947G>A) ATA222ATC (7969A>C) GAA225GGA (7977A>G) AGA229CAA (7988A>C 7989G>A) GAC230GGC (7992A>G) AGA231AAA (7995G>A) ATT235GTG (8006A>G 8008T>G) CGA236AGA (8009C>A) GTG238GCG (8016T>C) GGA240GGT (8023A>T) TCC241TTC (8025C>T) TTG242TTA (8029G>A) GCA243GCT (8032A>T) ATC245GCC (8036A>G 8037T>C) GAT248GAC (8047T>C) AGC251AAC (8055G>A) CAC258CGC (8076A>G) CGC259CAC (8079G>A) TTA263TTC (8092A>C) CTC264ATA (8093C>A 8095C>A) TTG265TTA (8098G>A) GTA267GCA (8103T>C) ACG268GCG (8105A>G) GAA272GAC (8119A>C) CTT273AGG (8120C>A 8121T>G 8122T>G) CTG274GGG (8123C>G 8124T>G) GGA275CTG (8126G>C 8127G>T 8128A>G) CGC276AGG (8129C>A 8131C>G) GCC281GCT (8146C>T) TGG285CTG (8156T>C 8157G>T) TGG286GGG (8159T>G) CTA289ACA (8168C>A 8169T>C) AGT293GGT (8180A>G) AGT299AGC (8200T>C) GTT301ATT (8204G>A) CTC304CTT (8215C>T) GCC308GCA (8227C>A) GGG314TGG (8243G>T) AGG317AGA (8254G>A) GTA321GCT (8265T>C 8266A>T) GTA322TTG (8267G>T 8269A>G) GGA324AGA (8273G>A) TGT326GGT (8279T>G) CGC330CTC (8292G>T) CAC331AAC (8294C>A) ATT343GCT (8330A>G 8331T>C) CTA345TTA (8336C>T)
1190100%97577.3%180 (94.7%)143 (75.3%)0/10/0/01
Protein mutations:
K19R (7433T>C) F21L (7428A>G) E40D (7369C>G) K56R (7322T>C) I59S (7313A>C) F64L (7299A>G) C67F (7289C>A) L70C (7280A>C 7281G>A) N80S (7250T>C) F84S (7238A>G) L98F (7197G>A) S100F (7190G>A) D109del (7162_7164delGTC) S110L (7160G>A) L111V (7156C>T 7158A>C) L113F (7150T>G 7152G>A) L114R (7148A>C 7149A>T) S122R (7123G>T) D127E (7108A>C) E128L (7106T>A 7107C>A) H129Q (7102A>C) L130V (7099T>C 7101G>C) C132V (7094C>A 7095A>C) L134A (7087C>T 7088A>G 7089G>C) G137L (7079C>A 7080C>A) F142R (7064A>C 7065A>G) F145S (7055A>G) I150T (7040A>G) L155R (7024C>T 7025A>C) S162P (7005A>G) P164N (6998G>T 6999G>T) S165P (6994T>A 6996A>G) L167S (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT 6989A>G) F168_L176del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) Q179F (6952T>A 6953T>A 6954G>A) L181S (6947A>G 6948G>A) C185S (6934A>T 6935C>G) V186S (6932A>G 6933C>A) E187V (6929T>A)
Codon mutations:
AGT6AGC (7471A>G) GCC13GCT (7450G>A) AAA19AGA (7433T>C) TTC21CTC (7428A>G) TGC23TGT (7420G>A) ATA26ATT (7411T>A) GTC38GTT (7375G>A) GAG40GAC (7369C>G) GCT41GCC (7366A>G) CCT47CCA (7348A>T) AAA56AGA (7322T>C) ATT59AGT (7313A>C) TTT64CTT (7299A>G) TGC67TTC (7289C>A) CTT70TGT (7280A>C 7281G>A) CTC71CTT (7276G>A) AAT80AGT (7250T>C) TTT84TCT (7238A>G) TCC97TCT (7198G>A) CTC98TTC (7197G>A) TCT100TTT (7190G>A) CCT102CCC (7183A>G) TCG108TCA (7165C>T) GAC109del (7162_7164delGTC) TCA110TTA (7160G>A) TTG111GTA (7156C>T 7158A>C) TTG112TTA (7153C>T) CTA113TTC (7150T>G 7152G>A) TTA114AGA (7148A>C 7149A>T) GTT119GTC (7132A>G) AGC122AGA (7123G>T) GAT127GAG (7108A>C) GAA128TTA (7106T>A 7107C>A) CAT129CAG (7102A>C) CTA130GTG (7099T>C 7101G>C) TGT132GTT (7094C>A 7095A>C) CCA133CCT (7090T>A) CTG134GCA (7087C>T 7088A>G 7089G>C) GGG137TTG (7079C>A 7080C>A) TTT142CGT (7064A>C 7065A>G) CCT143CCC (7060A>G) TTC145TCC (7055A>G) TTT149TTC (7042A>G) ATA150ACA (7040A>G) CTG155CGA (7024C>T 7025A>C) AGG158AGA (7015C>T) ATT160ATA (7009A>T) TCA162CCA (7005A>G) CTT163TTG (7000A>C 7002G>A) CCT164AAT (6998G>T 6999G>T) TCA165CCT (6994T>A 6996A>G) TTA167TCA (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT 6989A>G) TTT168_CTA176del (6962_6988delAGTACTTGGAGTACTGAAGGGTCAAAT) TTA177TTG (6958T>C) AAC178AAT (6955G>A) CAA179TTT (6952T>A 6953T>A 6954G>A) GTA180GTG (6949T>C) CTA181TCA (6947A>G 6948G>A) TGT185TCA (6934A>T 6935C>G) GTT186TCT (6932A>G 6933C>A) GAA187GTA (6929T>A)
119091.8%110279.9%190 (100%)142 (74.7%)0/0/0/00
Protein mutations:
V10I (8370G>A 8372G>A) I11V (8373A>G) T15A (8385A>G) V16I (8388G>A) M20L (8400A>C) A23T (8409G>A 8411T>C) E24P (8412G>C 8413A>C 8414G>T) D28E (8426T>G) R29G (8427A>G) A33V (8440C>T 8441A>G) R35Q (8446G>A) K39R (8458A>G) H40R (8461A>G 8462T>G) A49R (8487G>A 8488C>G) T51N (8494C>A 8495C>T) A53P (8499G>C) A54D (8503C>A 8504T>C) C55L (8506G>T 8507T>G) E64D (8534G>C) T71R (8554C>G) A83G (8590C>G) H102Y (8646C>T) Q104K (8652C>A 8654A>G) R105K (8656G>A) D108E (8666T>G) I114V (8682A>G) *124W (8713A>G) V133I (8739G>A) F139M (8757T>A 8759T>G) Y143F (8770A>T) E149D (8789G>C) D151E (8795T>G) K152E (8796A>G) I153V (8799A>G) E155K (8805G>A) K158E (8814A>G) T162N (8827C>A) S163C (8829A>T) V168M (8844G>A) L170Q (8851T>A 8852G>A) D174E (8864T>G) P176E (8868C>G 8869C>A 8870G>A) E177D (8873G>C) R178K (8875G>A) E182K (8886G>A) R184E (8892A>G 8893G>A) S187G (8901A>G)
Codon mutations:
GTG10ATA (8370G>A 8372G>A) ATT11GTT (8373A>G) ACT15GCT (8385A>G) GTA16ATA (8388G>A) ATG20CTG (8400A>C) GCT23ACC (8409G>A 8411T>C) GAG24CCT (8412G>C 8413A>C 8414G>T) GAT28GAG (8426T>G) AGG29GGG (8427A>G) GCA33GTG (8440C>T 8441A>G) CGA35CAA (8446G>A) CTG37TTA (8451C>T 8453G>A) AAA39AGA (8458A>G) CAT40CGG (8461A>G 8462T>G) GGA41GGG (8465A>G) ATC43ATT (8471C>T) AGT45AGC (8477T>C) ACA48ACT (8486A>T) GCA49AGA (8487G>A 8488C>G) ACC51AAT (8494C>A 8495C>T) GCT53CCT (8499G>C) GCT54GAC (8503C>A 8504T>C) TGT55TTG (8506G>T 8507T>G) CTA58CTG (8516A>G) GAG63GAA (8531G>A) GAG64GAC (8534G>C) GAG65GAA (8537G>A) GTG66GTA (8540G>A) GGT67GGC (8543T>C) ACA71AGA (8554C>G) ACT80ACC (8582T>C) TAC81TAT (8585C>T) GCA83GGA (8590C>G) CTT87CTC (8603T>C) AGC88AGT (8606C>T) CTA100TTA (8640C>T) CAC102TAC (8646C>T) CAA104AAG (8652C>A 8654A>G) AGA105AAA (8656G>A) GAT108GAG (8666T>G) ATC114GTC (8682A>G) TAG124TGG (8713A>G) GTC133ATC (8739G>A) TTT139ATG (8757T>A 8759T>G) GGA140GGG (8762A>G) TAC143TTC (8770A>T) GAG149GAC (8789G>C) GAT151GAG (8795T>G) AAG152GAG (8796A>G) ATA153GTA (8799A>G) GAG155AAG (8805G>A) AAA158GAA (8814A>G) ACC162AAC (8827C>A) AGC163TGC (8829A>T) TTA165CTA (8835T>C) GTG168ATG (8844G>A) CTG170CAA (8851T>A 8852G>A) GGG172GGA (8858G>A) GAT174GAG (8864T>G) GAC175GAT (8867C>T) CCG176GAA (8868C>G 8869C>A 8870G>A) GAG177GAC (8873G>C) AGA178AAA (8875G>A) TTA181CTG (8883T>C 8885A>G) GAG182AAG (8886G>A) AGG184GAG (8892A>G 8893G>A) AGC187GGC (8901A>G) CTA189TTG (8907C>T 8909A>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43