Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Gemsvirus gv5004652

Assembly

2530 (9 contig(s))
49.8
1269
81.88 rpm (after QC)
1
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Gemsvirus gv5004652 (Taxonomy ID: 2955946)
85.1005
78.7781
1
45

Alignment

3499.0 (NT) + 3319.0 (AA) = 6818.0
74.4079
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT14667330367.7%349970.4%2513 (98.4%)2159 (84.5%)24/17
Mutations:
14673C>A 14676T>G 14679C>T 14682A>G 14685A>T 14688T>C 14691T>G 14692G>T 14702C>T 14705T>G 14709C>T 14721T>C 14735A>T 14747G>A 14748G>A 14752C>Y 14753A>G 14754G>A 14755C>G 14756T>C 14759C>A 14769C>T 14772C>T 14774G>C 25881G>A 28184A>G 28199T>A 28253A>T 28256T>A 28293C>A 28294A>G 28304T>A 28306G>T 28308G>T 28314G>A 28323C>A 28330G>C 28334G>A 28337A>T 28355G>A 28362T>C 28538A>G 28539A>T 28540T>G 28547G>A 28548C>G 28553G>A 28555C>G 28556G>A 28558T>C 28561A>T 28567G>T 28568T>C 28570C>T 28571C>G 28573G>T 28574C>G 28575A>G 28576T>C 28577C>A 28580C>G 28582G>T 28583A>G 28584G>C 28585A>T 28586G>T 28587T>G 28588A>C 28594C>A 28598C>T 28599T>A 28600G>C 28601T>C 28602A>G 28604G>A 28607A>G 28613G>T 28619A>C 28620G>A 28628G>A 28634G>T 28636C>A 28640G>T 28643T>A 28645C>A 28647G>C 28648A>T 28649A>G 28652C>G 28653G>T 28654C>T 28656G>A 28658G>T 28659C>T 28660T>C 28661C>G 28663T>A 28663_28664insTGCGTG 28667G>A 28673C>T 28679A>C 28680C>T 28681G>T 28682G>A 28685A>T 28689G>T 28690C>T 28692A>G 28693G>C 28697T>A 28698T>G 28699T>A 28700C>A 28702C>T 28703G>A 28706G>A 28709A>T 28718C>A 28721A>T 28724A>T 28727A>G 28731G>A 28732A>C 28736C>G 28738G>T 28745G>T 28747T>C 28749G>T 28750G>C 28751G>T 28752G>T 28753_28754insCGGATCCAT 28754A>T 28757A>T 28758A>G 28760G>A 28761C>T 28763G>T 28765G>C 28768T>G 28769C>A 28772C>G 28773A>T 28776T>A 28777T>G 28781G>T 28782C>A 28783A>C 28784G>C 28785C>A 28788A>T 28789C>T 28790T>G 28793G>A 28796T>A 28797T>A 28798C>G 28799G>A 28802A>T 28803G>T 28804A>C 28807_28808insATGGGA 28811A>T 28812A>G 28813C>T 28816T>G 28819C>G 28820T>A 28821G>T 28822C>G 28824C>G 28829A>T 28831A>C 28832G>A 28834T>A 28835T>C 28836G>A 28837C>T 28838G>A 28841G>T 28842T>A 28843A>C 28844G>A 28847A>G 28848A>G 28850G>A 28852T>C 28856A>T 28865G>T 28867G>T 28868A>C 28877C>G 28881A>T 28882G>T 28883C>A 28895C>T 28901A>C 28903C>A 28904C>G 28906C>T 28907T>C 28909C>G 28910C>G 28911A>C 28912T>A 28919G>A 28922G>T 28923C>T 28925A>G 28926G>C 28928G>C 28931A>G 28933C>T 28937A>G 28947T>C 28948G>T 28949A>T 28953T>C 28954C>T 28956T>A 28958A>T 28960T>G 28964G>T 28967G>A 28970T>C 28973T>G 28974T>C 28975C>T 28979G>C 28980G>T 28981T>C 28982G>A 28989T>C 28990A>G 28991_28993delTTT 28994A>T 28997A>T 29003C>A 29007C>T 29008C>G 29012C>A 29017C>T 29021T>A 29022T>C 29026A>C 29027G>T 29028G>A 29030C>G 29031A>C 29032T>C 29034T>G 29036C>A 29037C>G 29038A>G 29040C>A 29042C>G 29044G>T 29045C>G 29046T>G 29047_29048insTGC 29051G>C 29052C>G 29053C>A 29054G>A 29057G>A 29060A>G 29062C>A 29063A>T 29065A>C 29066C>G 29068C>T 29069G>T 29071T>C 29074C>T 29075C>T 29076T>G 29077G>C 29081G>A 29087T>A 29088T>C 29090G>A 29094T>A 29096C>G 29098C>T 29099T>G 29101C>A 29102T>G 29105G>A 29107T>C 29108A>C 29109C>G 29111G>A 29114A>G 29115C>G 29116A>C 29117G>A 29119G>T 29120T>G 29122C>T 29123G>A 29129C>A 29135C>T 29138G>T 29141G>A 29143T>A 29144G>A 29145A>G 29147G>C 29149A>C 29157A>G 29158C>G 29159G>A 29696G>A 29705T>A 29706T>G 29730T>G 29880G>A 29907G>C 29910A>G 29913C>T 29919A>T 29920T>C 29927T>C 29931C>T 29940G>A 30885A>G 30935A>G 31078A>G 31099T>G 31143C>T 31179A>T 31194G>A 31195A>T 31200C>G 31203G>A 31206G>A 31215T>G 31221G>T 31224G>A 31237C>T 31830C>T 31832A>G 31834C>T 31837C>T 31841T>G 31844delC 31846T>C 31860T>C 31865T>A 31885G>A 31888T>C 31934T>G 31938delT 31962C>A 32043C>T 32048C>A 32082C>T 32087G>A 32088_32099delACGGTCGCGGAA 32981C>T 33006T>C 33025T>C
CDS
13425.6%18072.0%34 (100%)26 (76.5%)0/0/1/00
Protein mutations:
V4F (14759C>A) S5A (14754G>A 14755C>G 14756T>C) L8F (14747G>A) L12I (14735A>T) D23N (14702C>T) T26N (14691T>G 14692G>T) D28E (14685A>T)
Codon mutations:
GTT4TTT (14759C>A) AGC5GCT (14754G>A 14755C>G 14756T>C) TGT6CRT (14752C>Y 14753A>G) TAC7TAT (14748G>A) CTC8TTC (14747G>A) TTA12ATA (14735A>T) TTA16TTG (14721T>C) GCG20GCA (14709C>T) AGG22CGG (14705T>G) GAT23AAT (14702C>T) ACA26AAC (14691T>G 14692G>T) GGA27GGG (14688T>C) GAT28GAA (14685A>T) AAT29AAC (14682A>G) CAG30CAA (14679C>T) ATA31ATC (14676T>G) CCG32CCT (14673C>A)
15215.7%35197.5%52 (100%)51 (98.1%)0/0/0/00
182.0%3683.7%8 (100%)7 (87.5%)0/0/0/00
15136552.8%72549.5%214 (96.0%)112 (50.2%)8/1/0/00
Protein mutations:
V155P (29157A>G 29158C>G) S158A (29147G>C 29149A>C) I159T (29144G>A 29145A>G) S160C (29141G>A 29143T>A) A167T (29120T>G 29122C>T) H168N (29117G>A 29119G>T) C169A (29114A>G 29115C>G 29116A>C) G171A (29108A>C 29109C>G) N172D (29105G>A 29107T>C) V174F (29099T>G 29101C>A) E175N (29096C>G 29098C>T) Q176L (29094T>A) Q178R (29087T>A 29088T>C) Q182A (29075C>T 29076T>G 29077G>C) D183N (29074C>T) I184V (29069G>T 29071T>C) V185I (29066C>G 29068C>T) F186V (29063A>T 29065A>C) A187S (29060A>G 29062C>A) G190S (29051G>C 29052C>G 29053C>A) E191_E192insA (29047_29048insTGC) E192A (29045C>G 29046T>G) L193I (29042C>G 29044G>T) C194F (29040C>A) W195P (29036C>A 29037C>G 29038A>G) E196A (29034T>G) M197G (29030C>G 29031A>C 29032T>C) A198V (29027G>T 29028G>A) C199G (29026A>C) E200G (29021T>A 29022T>C) D202N (29017C>T) G205H (29007C>T 29008C>G) K210del (28991_28993delTTT) Y211R (28989T>C 28990A>G) T214E (28979G>C 28980G>T 28981T>C) E216S (28973T>G 28974T>C 28975C>T) T221P (28958A>T 28960T>G) Y222F (28956T>A) D223S (28953T>C 28954C>T) H225S (28947T>C 28948G>T) V230I (28931A>G 28933C>T) I231M (28928G>C) A232G (28925A>G 28926G>C) G233E (28922G>T 28923C>T) M237C (28910C>G 28911A>C 28912T>A) V238L (28907T>C 28909C>G) V239I (28904C>G 28906C>T) V240L (28901A>C 28903C>A) L247K (28881A>T 28882G>T) H252K (28865G>T 28867G>T) I257V (28850G>A 28852T>C) V258A (28847A>G 28848A>G) Y260V (28841G>T 28842T>A 28843A>C) A262M (28835T>C 28836G>A 28837C>T) T263S (28832G>A 28834T>A) S264A (28829A>T 28831A>C) G266A (28824C>G) A267H (28820T>A 28821G>T 28822C>G) D268H (28819C>G) M269L (28816T>G) V270T (28811A>T 28812A>G 28813C>T) A271_P272insSH (28807_28808insATGGGA) S273E (28802A>T 28803G>T 28804A>C) E275L (28796T>A 28797T>A 28798C>G) V278K (28788A>T 28789C>T) R279L (28784G>C 28785C>A) C280V (28781G>T 28782C>A 28783A>C) K282L (28776T>A 28777T>G) M283N (28772C>G 28773A>T) M285L (28768T>G) H286E (28763G>T 28765G>C) G287D (28760G>A 28761C>T) V288A (28757A>T 28758A>G) D289E (28754A>T) D289_T290insMDP (28753_28754insCGGATCCAT) T290K (28751G>T 28752G>T) P291E (28749G>T 28750G>C) I292V (28745G>T 28747T>C) L295I (28736C>G 28738G>T) S297V (28731G>A 28732A>C) V307I (28700C>A 28702C>T) K308S (28697T>A 28698T>G 28699T>A) L310A (28692A>G 28693G>C) A311K (28689G>T 28690C>T) R314K (28679A>C 28680C>T 28681G>T) D319_K320insHA (28663_28664insTGCGTG) K320Y (28661C>G 28663T>A) S321E (28658G>T 28659C>T 28660T>C) P322L (28656G>A) A323N (28652C>G 28653G>T 28654C>T) A326S (28643T>A 28645C>A) A329S (28634G>T 28636C>A) S334L (28619A>C 28620G>A) V340A (28601T>C 28602A>G) Q341V (28598C>T 28599T>A 28600G>C) A343S (28594C>A) Y345A (28586G>T 28587T>G 28588A>C) L347I (28580C>G 28582G>T) M349A (28574C>G 28575A>G 28576T>C) L350I (28571C>G 28573G>T) E351K (28568T>C 28570C>T) H352N (28567G>T) F354I (28561A>T) I355V (28556G>A 28558T>C) A356P (28553G>A 28555C>G) S358T (28547G>A 28548C>G) I361H (28538A>G 28539A>T 28540T>G)
Codon mutations:
GGC154GGT (29159G>A) GTT155CCT (29157A>G 29158C>G) TCC158GCG (29147G>C 29149A>C) ATC159ACT (29144G>A 29145A>G) AGC160TGT (29141G>A 29143T>A) TCC161TCA (29138G>T) GCG162GCA (29135C>T) GCG164GCT (29129C>A) TCC166TCT (29123G>A) GCA167ACC (29120T>G 29122C>T) CAC168AAT (29117G>A 29119G>T) TGT169GCC (29114A>G 29115C>G 29116A>C) ATC170ATT (29111G>A) GGT171GCG (29108A>C 29109C>G) AAC172GAT (29105G>A 29107T>C) GCA173GCC (29102T>G) GTA174TTC (29099T>G 29101C>A) GAG175AAC (29096C>G 29098C>T) CAG176CTG (29094T>A) ATC177ATT (29090G>A) CAA178CGT (29087T>A 29088T>C) GGC180GGT (29081G>A) CAG182GCA (29075C>T 29076T>G 29077G>C) GAC183AAC (29074C>T) ATC184GTA (29069G>T 29071T>C) GTG185ATC (29066C>G 29068C>T) TTT186GTA (29063A>T 29065A>C) GCT187TCC (29060A>G 29062C>A) GGC188GGT (29057G>A) GGC189GGT (29054G>A) GGC190TCG (29051G>C 29052C>G 29053C>A) GAA191_GAG192insGCA (29047_29048insTGC) GAG192GCC (29045C>G 29046T>G) CTG193ATC (29042C>G 29044G>T) TGC194TTC (29040C>A) TGG195CCT (29036C>A 29037C>G 29038A>G) GAA196GCA (29034T>G) ATG197GGC (29030C>G 29031A>C 29032T>C) GCC198GTA (29027G>T 29028G>A) TGC199GGC (29026A>C) GAA200GGT (29021T>A 29022T>C) GAC202AAC (29017C>T) GCG203GCT (29012C>A) GGT205CAT (29007C>T 29008C>G) GCG206GCT (29003C>A) TCT208TCA (28997A>T) ACT209ACA (28994A>T) AAA210del (28991_28993delTTT) TAC211CGC (28989T>C 28990A>G) GAC213GAT (28982G>A) ACC214GAG (28979G>C 28980G>T 28981T>C) GAA216AGC (28973T>G 28974T>C 28975C>T) AAA217AAG (28970T>C) GCC218GCT (28967G>A) TCC219TCA (28964G>T) ACT221CCA (28958A>T 28960T>G) TAC222TTC (28956T>A) GAC223AGC (28953T>C 28954C>T) GCT224GCA (28949A>T) CAC225AGC (28947T>C 28948G>T) GGT228GGC (28937A>G) GTT230ATC (28931A>G 28933C>T) ATC231ATG (28928G>C) GCT232GGC (28925A>G 28926G>C) GGC233GAA (28922G>T 28923C>T) GGC234GGT (28919G>A) ATG237TGC (28910C>G 28911A>C 28912T>A) GTA238CTG (28907T>C 28909C>G) GTG239ATC (28904C>G 28906C>T) GTT240TTG (28901A>C 28903C>A) GAG242GAA (28895C>T) GCG246GCT (28883C>A) CTG247AAG (28881A>T 28882G>T) GCG248GCC (28877C>G) GCT251GCG (28868A>C) CAC252AAA (28865G>T 28867G>T) GCT255GCA (28856A>T) ATC257GTT (28850G>A 28852T>C) GTT258GCC (28847A>G 28848A>G) GGC259GGT (28844G>A) TAC260GTA (28841G>T 28842T>A 28843A>C) GGC261GGT (28838G>A) GCA262ATG (28835T>C 28836G>A 28837C>T) ACC263TCT (28832G>A 28834T>A) TCT264GCA (28829A>T 28831A>C) GGT266GCT (28824C>G) GCA267CAT (28820T>A 28821G>T 28822C>G) GAC268CAC (28819C>G) ATG269CTG (28816T>G) GTT270ACA (28811A>T 28812A>G 28813C>T) GCT271_CCG272insTCCCAT (28807_28808insATGGGA) TCT273GAA (28802A>T 28803G>T 28804A>C) GGC274GGT (28799G>A) GAA275CTT (28796T>A 28797T>A 28798C>G) GGC276GGT (28793G>A) GCA277GCC (28790T>G) GTA278AAA (28788A>T 28789C>T) CGC279CTG (28784G>C 28785C>A) TGC280GTA (28781G>T 28782C>A 28783A>C) AAG282CTG (28776T>A 28777T>G) ATG283AAC (28772C>G 28773A>T) GCG284GCT (28769C>A) ATG285CTG (28768T>G) CAC286GAA (28763G>T 28765G>C) GGC287GAT (28760G>A 28761C>T) GTT288GCA (28757A>T 28758A>G) GAT289GAA (28754A>T) GAT289_ACC290insATGGATCCG (28753_28754insCGGATCCAT) ACC290AAA (28751G>T 28752G>T) CCA291GAA (28749G>T 28750G>C) ATC292GTA (28745G>T 28747T>C) CTG295ATC (28736C>G 28738G>T) TCT297GTT (28731G>A 28732A>C) CAT298CAC (28727A>G) GGT299GGA (28724A>T) ACT300ACA (28721A>T) TCG301TCT (28718C>A) GTT304GTA (28709A>T) GGC305GGT (28706G>A) GAC306GAT (28703G>A) GTG307ATT (28700C>A 28702C>T) AAA308TCT (28697T>A 28698T>G 28699T>A) CTG310GCG (28692A>G 28693G>C) GCA311AAA (28689G>T 28690C>T) GCT312GCA (28685A>T) ATC313ATT (28682G>A) CGT314AAG (28679A>C 28680C>T 28681G>T) GTG316GTA (28673C>T) GGC318GGT (28667G>A) GAT319_AAG320insCACGCA (28663_28664insTGCGTG) AAG320TAC (28661C>G 28663T>A) AGC321GAA (28658G>T 28659C>T 28660T>C) CCG322CTG (28656G>A) GCG323AAC (28652C>G 28653G>T 28654C>T) ATT324ATC (28649A>G) TCT325AGT (28647G>C 28648A>T) GCA326TCT (28643T>A 28645C>A) ACC327ACA (28640G>T) GCC329TCA (28634G>T 28636C>A) ACC331ACT (28628G>A) TCT334TTG (28619A>C 28620G>A) GGC336GGA (28613G>T) GCT338GCC (28607A>G) GGC339GGT (28604G>A) GTA340GCG (28601T>C 28602A>G) CAG341GTA (28598C>T 28599T>A 28600G>C) GCT343TCT (28594C>A) TAC345GCA (28586G>T 28587T>G 28588A>C) TCT346AGC (28583A>G 28584G>C 28585A>T) CTG347ATC (28580C>G 28582G>T) CTG348CTT (28577C>A) ATG349GCC (28574C>G 28575A>G 28576T>C) CTG350ATC (28571C>G 28573G>T) GAA351AAG (28568T>C 28570C>T) CAC352AAC (28567G>T) TTT354ATT (28561A>T) ATC355GTT (28556G>A 28558T>C) GCC356CCT (28553G>A 28555C>G) AGC358ACT (28547G>A 28548C>G) ATT361CAC (28538A>G 28539A>T 28540T>G)
150840.8%145494.3%213 (100%)204 (95.8%)0/0/0/00
Protein mutations:
Q67H (29919A>T) V70A (29927T>C) E406G (30935A>G) N454D (31078A>G) C461G (31099T>G) T493S (31195A>T) P507S (31237C>T)
Codon mutations:
CTT4CTG (29730T>G) GGG54GGA (29880G>A) CTG63CTC (29907G>C) GGA64GGG (29910A>G) GGC65GGT (29913C>T) CAA67CAT (29919A>T) TTA68CTA (29920T>C) GTA70GCA (29927T>C) CGC71CGT (29931C>T) GAG74GAA (29940G>A) TCA389TCG (30885A>G) GAA406GGA (30935A>G) AAT454GAT (31078A>G) TGT461GGT (31099T>G) AGC475AGT (31143C>T) CGA487CGT (31179A>T) TCG492TCA (31194G>A) ACT493TCT (31195A>T) CTC494CTG (31200C>G) CCG495CCA (31203G>A) GTG496GTA (31206G>A) GTT499GTG (31215T>G) GGG501GGT (31221G>T) CAG502CAA (31224G>A) CCG507TCG (31237C>T)
132729.7%57396.3%93 (95.9%)90 (92.8%)0/4/0/01
Protein mutations:
F280_R283del (32088_32099delACGGTCGCGGAA) A297S (32048C>A) M298I (32043C>T)
Codon mutations:
TTC280_CGT283del (32088_32099delACGGTCGCGGAA) CTG284TTG (32087G>A) GCG285GCA (32082C>T) GCG297TCG (32048C>A) ATG298ATA (32043C>T) GCG325GCT (31962C>A)
Proteins
13425.6%18072.0%34 (100%)26 (76.5%)0/0/1/00
Protein mutations:
V4F (14759C>A) S5A (14754G>A 14755C>G 14756T>C) L8F (14747G>A) L12I (14735A>T) D23N (14702C>T) T26N (14691T>G 14692G>T) D28E (14685A>T)
Codon mutations:
GTT4TTT (14759C>A) AGC5GCT (14754G>A 14755C>G 14756T>C) TGT6CRT (14752C>Y 14753A>G) TAC7TAT (14748G>A) CTC8TTC (14747G>A) TTA12ATA (14735A>T) TTA16TTG (14721T>C) GCG20GCA (14709C>T) AGG22CGG (14705T>G) GAT23AAT (14702C>T) ACA26AAC (14691T>G 14692G>T) GGA27GGG (14688T>C) GAT28GAA (14685A>T) AAT29AAC (14682A>G) CAG30CAA (14679C>T) ATA31ATC (14676T>G) CCG32CCT (14673C>A)
15215.7%35197.5%52 (100%)51 (98.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
182.0%3683.7%8 (100%)7 (87.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
15136552.8%72549.5%214 (96.0%)112 (50.2%)8/1/0/00
Protein mutations:
V155P (29157A>G 29158C>G) S158A (29147G>C 29149A>C) I159T (29144G>A 29145A>G) S160C (29141G>A 29143T>A) A167T (29120T>G 29122C>T) H168N (29117G>A 29119G>T) C169A (29114A>G 29115C>G 29116A>C) G171A (29108A>C 29109C>G) N172D (29105G>A 29107T>C) V174F (29099T>G 29101C>A) E175N (29096C>G 29098C>T) Q176L (29094T>A) Q178R (29087T>A 29088T>C) Q182A (29075C>T 29076T>G 29077G>C) D183N (29074C>T) I184V (29069G>T 29071T>C) V185I (29066C>G 29068C>T) F186V (29063A>T 29065A>C) A187S (29060A>G 29062C>A) G190S (29051G>C 29052C>G 29053C>A) E191_E192insA (29047_29048insTGC) E192A (29045C>G 29046T>G) L193I (29042C>G 29044G>T) C194F (29040C>A) W195P (29036C>A 29037C>G 29038A>G) E196A (29034T>G) M197G (29030C>G 29031A>C 29032T>C) A198V (29027G>T 29028G>A) C199G (29026A>C) E200G (29021T>A 29022T>C) D202N (29017C>T) G205H (29007C>T 29008C>G) K210del (28991_28993delTTT) Y211R (28989T>C 28990A>G) T214E (28979G>C 28980G>T 28981T>C) E216S (28973T>G 28974T>C 28975C>T) T221P (28958A>T 28960T>G) Y222F (28956T>A) D223S (28953T>C 28954C>T) H225S (28947T>C 28948G>T) V230I (28931A>G 28933C>T) I231M (28928G>C) A232G (28925A>G 28926G>C) G233E (28922G>T 28923C>T) M237C (28910C>G 28911A>C 28912T>A) V238L (28907T>C 28909C>G) V239I (28904C>G 28906C>T) V240L (28901A>C 28903C>A) L247K (28881A>T 28882G>T) H252K (28865G>T 28867G>T) I257V (28850G>A 28852T>C) V258A (28847A>G 28848A>G) Y260V (28841G>T 28842T>A 28843A>C) A262M (28835T>C 28836G>A 28837C>T) T263S (28832G>A 28834T>A) S264A (28829A>T 28831A>C) G266A (28824C>G) A267H (28820T>A 28821G>T 28822C>G) D268H (28819C>G) M269L (28816T>G) V270T (28811A>T 28812A>G 28813C>T) A271_P272insSH (28807_28808insATGGGA) S273E (28802A>T 28803G>T 28804A>C) E275L (28796T>A 28797T>A 28798C>G) V278K (28788A>T 28789C>T) R279L (28784G>C 28785C>A) C280V (28781G>T 28782C>A 28783A>C) K282L (28776T>A 28777T>G) M283N (28772C>G 28773A>T) M285L (28768T>G) H286E (28763G>T 28765G>C) G287D (28760G>A 28761C>T) V288A (28757A>T 28758A>G) D289E (28754A>T) D289_T290insMDP (28753_28754insCGGATCCAT) T290K (28751G>T 28752G>T) P291E (28749G>T 28750G>C) I292V (28745G>T 28747T>C) L295I (28736C>G 28738G>T) S297V (28731G>A 28732A>C) V307I (28700C>A 28702C>T) K308S (28697T>A 28698T>G 28699T>A) L310A (28692A>G 28693G>C) A311K (28689G>T 28690C>T) R314K (28679A>C 28680C>T 28681G>T) D319_K320insHA (28663_28664insTGCGTG) K320Y (28661C>G 28663T>A) S321E (28658G>T 28659C>T 28660T>C) P322L (28656G>A) A323N (28652C>G 28653G>T 28654C>T) A326S (28643T>A 28645C>A) A329S (28634G>T 28636C>A) S334L (28619A>C 28620G>A) V340A (28601T>C 28602A>G) Q341V (28598C>T 28599T>A 28600G>C) A343S (28594C>A) Y345A (28586G>T 28587T>G 28588A>C) L347I (28580C>G 28582G>T) M349A (28574C>G 28575A>G 28576T>C) L350I (28571C>G 28573G>T) E351K (28568T>C 28570C>T) H352N (28567G>T) F354I (28561A>T) I355V (28556G>A 28558T>C) A356P (28553G>A 28555C>G) S358T (28547G>A 28548C>G) I361H (28538A>G 28539A>T 28540T>G)
Codon mutations:
GGC154GGT (29159G>A) GTT155CCT (29157A>G 29158C>G) TCC158GCG (29147G>C 29149A>C) ATC159ACT (29144G>A 29145A>G) AGC160TGT (29141G>A 29143T>A) TCC161TCA (29138G>T) GCG162GCA (29135C>T) GCG164GCT (29129C>A) TCC166TCT (29123G>A) GCA167ACC (29120T>G 29122C>T) CAC168AAT (29117G>A 29119G>T) TGT169GCC (29114A>G 29115C>G 29116A>C) ATC170ATT (29111G>A) GGT171GCG (29108A>C 29109C>G) AAC172GAT (29105G>A 29107T>C) GCA173GCC (29102T>G) GTA174TTC (29099T>G 29101C>A) GAG175AAC (29096C>G 29098C>T) CAG176CTG (29094T>A) ATC177ATT (29090G>A) CAA178CGT (29087T>A 29088T>C) GGC180GGT (29081G>A) CAG182GCA (29075C>T 29076T>G 29077G>C) GAC183AAC (29074C>T) ATC184GTA (29069G>T 29071T>C) GTG185ATC (29066C>G 29068C>T) TTT186GTA (29063A>T 29065A>C) GCT187TCC (29060A>G 29062C>A) GGC188GGT (29057G>A) GGC189GGT (29054G>A) GGC190TCG (29051G>C 29052C>G 29053C>A) GAA191_GAG192insGCA (29047_29048insTGC) GAG192GCC (29045C>G 29046T>G) CTG193ATC (29042C>G 29044G>T) TGC194TTC (29040C>A) TGG195CCT (29036C>A 29037C>G 29038A>G) GAA196GCA (29034T>G) ATG197GGC (29030C>G 29031A>C 29032T>C) GCC198GTA (29027G>T 29028G>A) TGC199GGC (29026A>C) GAA200GGT (29021T>A 29022T>C) GAC202AAC (29017C>T) GCG203GCT (29012C>A) GGT205CAT (29007C>T 29008C>G) GCG206GCT (29003C>A) TCT208TCA (28997A>T) ACT209ACA (28994A>T) AAA210del (28991_28993delTTT) TAC211CGC (28989T>C 28990A>G) GAC213GAT (28982G>A) ACC214GAG (28979G>C 28980G>T 28981T>C) GAA216AGC (28973T>G 28974T>C 28975C>T) AAA217AAG (28970T>C) GCC218GCT (28967G>A) TCC219TCA (28964G>T) ACT221CCA (28958A>T 28960T>G) TAC222TTC (28956T>A) GAC223AGC (28953T>C 28954C>T) GCT224GCA (28949A>T) CAC225AGC (28947T>C 28948G>T) GGT228GGC (28937A>G) GTT230ATC (28931A>G 28933C>T) ATC231ATG (28928G>C) GCT232GGC (28925A>G 28926G>C) GGC233GAA (28922G>T 28923C>T) GGC234GGT (28919G>A) ATG237TGC (28910C>G 28911A>C 28912T>A) GTA238CTG (28907T>C 28909C>G) GTG239ATC (28904C>G 28906C>T) GTT240TTG (28901A>C 28903C>A) GAG242GAA (28895C>T) GCG246GCT (28883C>A) CTG247AAG (28881A>T 28882G>T) GCG248GCC (28877C>G) GCT251GCG (28868A>C) CAC252AAA (28865G>T 28867G>T) GCT255GCA (28856A>T) ATC257GTT (28850G>A 28852T>C) GTT258GCC (28847A>G 28848A>G) GGC259GGT (28844G>A) TAC260GTA (28841G>T 28842T>A 28843A>C) GGC261GGT (28838G>A) GCA262ATG (28835T>C 28836G>A 28837C>T) ACC263TCT (28832G>A 28834T>A) TCT264GCA (28829A>T 28831A>C) GGT266GCT (28824C>G) GCA267CAT (28820T>A 28821G>T 28822C>G) GAC268CAC (28819C>G) ATG269CTG (28816T>G) GTT270ACA (28811A>T 28812A>G 28813C>T) GCT271_CCG272insTCCCAT (28807_28808insATGGGA) TCT273GAA (28802A>T 28803G>T 28804A>C) GGC274GGT (28799G>A) GAA275CTT (28796T>A 28797T>A 28798C>G) GGC276GGT (28793G>A) GCA277GCC (28790T>G) GTA278AAA (28788A>T 28789C>T) CGC279CTG (28784G>C 28785C>A) TGC280GTA (28781G>T 28782C>A 28783A>C) AAG282CTG (28776T>A 28777T>G) ATG283AAC (28772C>G 28773A>T) GCG284GCT (28769C>A) ATG285CTG (28768T>G) CAC286GAA (28763G>T 28765G>C) GGC287GAT (28760G>A 28761C>T) GTT288GCA (28757A>T 28758A>G) GAT289GAA (28754A>T) GAT289_ACC290insATGGATCCG (28753_28754insCGGATCCAT) ACC290AAA (28751G>T 28752G>T) CCA291GAA (28749G>T 28750G>C) ATC292GTA (28745G>T 28747T>C) CTG295ATC (28736C>G 28738G>T) TCT297GTT (28731G>A 28732A>C) CAT298CAC (28727A>G) GGT299GGA (28724A>T) ACT300ACA (28721A>T) TCG301TCT (28718C>A) GTT304GTA (28709A>T) GGC305GGT (28706G>A) GAC306GAT (28703G>A) GTG307ATT (28700C>A 28702C>T) AAA308TCT (28697T>A 28698T>G 28699T>A) CTG310GCG (28692A>G 28693G>C) GCA311AAA (28689G>T 28690C>T) GCT312GCA (28685A>T) ATC313ATT (28682G>A) CGT314AAG (28679A>C 28680C>T 28681G>T) GTG316GTA (28673C>T) GGC318GGT (28667G>A) GAT319_AAG320insCACGCA (28663_28664insTGCGTG) AAG320TAC (28661C>G 28663T>A) AGC321GAA (28658G>T 28659C>T 28660T>C) CCG322CTG (28656G>A) GCG323AAC (28652C>G 28653G>T 28654C>T) ATT324ATC (28649A>G) TCT325AGT (28647G>C 28648A>T) GCA326TCT (28643T>A 28645C>A) ACC327ACA (28640G>T) GCC329TCA (28634G>T 28636C>A) ACC331ACT (28628G>A) TCT334TTG (28619A>C 28620G>A) GGC336GGA (28613G>T) GCT338GCC (28607A>G) GGC339GGT (28604G>A) GTA340GCG (28601T>C 28602A>G) CAG341GTA (28598C>T 28599T>A 28600G>C) GCT343TCT (28594C>A) TAC345GCA (28586G>T 28587T>G 28588A>C) TCT346AGC (28583A>G 28584G>C 28585A>T) CTG347ATC (28580C>G 28582G>T) CTG348CTT (28577C>A) ATG349GCC (28574C>G 28575A>G 28576T>C) CTG350ATC (28571C>G 28573G>T) GAA351AAG (28568T>C 28570C>T) CAC352AAC (28567G>T) TTT354ATT (28561A>T) ATC355GTT (28556G>A 28558T>C) GCC356CCT (28553G>A 28555C>G) AGC358ACT (28547G>A 28548C>G) ATT361CAC (28538A>G 28539A>T 28540T>G)
150840.8%145494.3%213 (100%)204 (95.8%)0/0/0/00
Protein mutations:
Q67H (29919A>T) V70A (29927T>C) E406G (30935A>G) N454D (31078A>G) C461G (31099T>G) T493S (31195A>T) P507S (31237C>T)
Codon mutations:
CTT4CTG (29730T>G) GGG54GGA (29880G>A) CTG63CTC (29907G>C) GGA64GGG (29910A>G) GGC65GGT (29913C>T) CAA67CAT (29919A>T) TTA68CTA (29920T>C) GTA70GCA (29927T>C) CGC71CGT (29931C>T) GAG74GAA (29940G>A) TCA389TCG (30885A>G) GAA406GGA (30935A>G) AAT454GAT (31078A>G) TGT461GGT (31099T>G) AGC475AGT (31143C>T) CGA487CGT (31179A>T) TCG492TCA (31194G>A) ACT493TCT (31195A>T) CTC494CTG (31200C>G) CCG495CCA (31203G>A) GTG496GTA (31206G>A) GTT499GTG (31215T>G) GGG501GGT (31221G>T) CAG502CAA (31224G>A) CCG507TCG (31237C>T)
132729.7%57396.3%93 (95.9%)90 (92.8%)0/4/0/01
Protein mutations:
F280_R283del (32088_32099delACGGTCGCGGAA) A297S (32048C>A) M298I (32043C>T)
Codon mutations:
TTC280_CGT283del (32088_32099delACGGTCGCGGAA) CTG284TTG (32087G>A) GCG285GCA (32082C>T) GCG297TCG (32048C>A) ATG298ATA (32043C>T) GCG325GCT (31962C>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43