NGS Details (SRR3458562_Metagenome_example): Peduovirus L413C

Assembly

9262 (44 contig(s))
7.3
625
40.33 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus L413C (Taxonomy ID: 227940)
99.6005
98.9725
13
40

Alignment

18376.0 (NT) + 19707.0 (AA) = 38083.0
99.5842
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT12912879630.1%1837699.2%9262 (100%)9225 (99.6%)0/0
Mutations:9789A>G, 9797T>C, 9861T>C, 10749C>T, 10821T>C, 10980T>G, 11025C>T, 11247A>G, 11253T>C, 11319G>T, 11335A>C, 11371T>C, 11437T>C, 11482G>T, 11485C>T, 11572C>A, 11689T>C, 11725G>T, 11755T>C, 12185A>T, 12221A>G, 12252C>G, 12257C>T, 15147G>A, 15150A>G, 22097G>A, 22112T>C, 22118A>T, 26246G>A, 26300C>T, 28249C>T, 28287T>C, 28312C>A, 28315C>T, 28390C>T, 28417T>C, 28429T>C
CDS
23356924.0%92497.5%142 (100%)139 (97.9%)0/0/0/00
128471.6%133799.0%204 (100%)203 (99.5%)0/0/0/00
24930315.4%36098.4%55 (100%)55 (100%)0/0/0/00
8617614.1%22593.0%35 (100%)34 (97.1%)0/0/0/00
1691701.2%746.7%2 (100%)2 (100%)0/0/0/01
13044.1%19598.0%30 (100%)29 (96.7%)0/0/0/00
499448.9%30898.4%46 (100%)46 (100%)0/0/0/01
116648.8%60499.0%81 (100%)81 (100%)0/0/0/01
1411517.3%68100%11 (100%)11 (100%)0/0/0/01
10021245.8%58796.9%97 (100%)95 (97.9%)0/0/0/01
Protein mutations:V121A (9797T>C)
Codon mutations:GCA118GCG (9789A>G), GTA121GCA (9797T>C), GTT142GTC (9861T>C)
111669.0%51396.1%80 (100%)79 (98.8%)0/0/0/01
130382.5%161599.1%250 (100%)249 (99.6%)0/0/0/01
117796.6%124399.3%171 (100%)171 (100%)0/0/0/01
191035.9%209799.0%328 (100%)324 (98.8%)0/0/0/00
Protein mutations:L131V (12252C>G)
Codon mutations:GCA108GCT (12185A>T), GGA120GGG (12221A>G), CTC131GTC (12252C>G), AGC132AGT (12257C>T)
3517680.7%94396.6%142 (100%)141 (99.3%)0/0/1/01
120929.0%72498.9%115 (100%)113 (98.3%)0/0/0/00
14716611.6%13796.5%20 (100%)20 (100%)0/0/0/00
2211328.0%26293.6%40 (100%)39 (97.5%)0/0/0/00
229221.7%11191.7%20 (100%)19 (95.0%)0/0/0/01
28081636.8%188798.3%300 (100%)297 (99.0%)0/0/0/01
113742.5%43396.9%68 (100%)66 (97.1%)0/0/0/00
3727762.1%160699.8%241 (100%)241 (100%)0/0/0/00
214828.0%21193.4%28 (100%)27 (96.4%)0/0/0/00
305647.4%16695.4%27 (100%)27 (100%)0/0/0/00
8016135.9%39992.8%60 (100%)59 (98.3%)0/0/0/00
437544.0%18896.9%33 (100%)33 (100%)0/0/0/01
110097.0%58998.0%97 (100%)96 (99.0%)0/0/0/01
11418.7%104100%14 (100%)14 (100%)0/0/0/00
22365336.7%186496.8%280 (100%)276 (98.6%)0/0/0/00
Protein mutations:V483A (28287T>C)
Codon mutations:AAC470AAT (28249C>T), GTT483GCT (28287T>C), CGC491CGA (28312C>A), ATC492ATT (28315C>T), AGC517AGT (28390C>T), GTT526GTC (28417T>C), CGT530CGC (28429T>C)
Proteins
23356924.0%92497.5%142 (100%)139 (97.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
128471.6%133799.0%204 (100%)203 (99.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
24930315.4%36098.4%55 (100%)55 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
8617614.1%22593.0%35 (100%)34 (97.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
1691701.2%746.7%2 (100%)2 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
13044.1%19598.0%30 (100%)29 (96.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
499448.9%30898.4%46 (100%)46 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
116648.8%60499.0%81 (100%)81 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1411517.3%68100%11 (100%)11 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
10021245.8%58796.9%97 (100%)95 (97.9%)0/0/0/01
Protein mutations:V121A (9797T>C)
Codon mutations:GCA118GCG (9789A>G), GTA121GCA (9797T>C), GTT142GTC (9861T>C)
111669.0%51396.1%80 (100%)79 (98.8%)0/0/0/01
Protein mutations:none
Codon mutations:none
130382.5%161599.1%250 (100%)249 (99.6%)0/0/0/01
Protein mutations:none
Codon mutations:ACC110ACT (10749C>T), GGT134GGC (10821T>C), GCT187GCG (10980T>G), GCC202GCT (11025C>T), CCA276CCG (11247A>G), GCT278GCC (11253T>C), TCG300TCT (11319G>T)
117796.6%124399.3%171 (100%)171 (100%)0/0/0/01
Protein mutations:none
Codon mutations:CGA5CGC (11335A>C), GCT17GCC (11371T>C), GAT39GAC (11437T>C), TCG54TCT (11482G>T), GTC55GTT (11485C>T), GTC84GTA (11572C>A), GGT123GGC (11689T>C), CTG135CTT (11725G>T), CAT145CAC (11755T>C)
191035.9%209799.0%328 (100%)324 (98.8%)0/0/0/00
Protein mutations:L131V (12252C>G)
Codon mutations:GCA108GCT (12185A>T), GGA120GGG (12221A>G), CTC131GTC (12252C>G), AGC132AGT (12257C>T)
3517680.7%94396.6%142 (100%)141 (99.3%)0/0/1/01
Protein mutations:none
Codon mutations:none
120929.0%72498.9%115 (100%)113 (98.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
14716611.6%13796.5%20 (100%)20 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
2211328.0%26293.6%40 (100%)39 (97.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
229221.7%11191.7%20 (100%)19 (95.0%)0/0/0/01
Protein mutations:none
Codon mutations:none
28081636.8%188798.3%300 (100%)297 (99.0%)0/0/0/01
Protein mutations:none
Codon mutations:none
113742.5%43396.9%68 (100%)66 (97.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
3727762.1%160699.8%241 (100%)241 (100%)0/0/0/00
Protein mutations:none
Codon mutations:GCG164GCA (22097G>A), CGT169CGC (22112T>C), GCA171GCT (22118A>T)
214828.0%21193.4%28 (100%)27 (96.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
305647.4%16695.4%27 (100%)27 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
8016135.9%39992.8%60 (100%)59 (98.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
437544.0%18896.9%33 (100%)33 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
110097.0%58998.0%97 (100%)96 (99.0%)0/0/0/01
Protein mutations:none
Codon mutations:GTG65GTA (26246G>A), CTC83CTT (26300C>T)
11418.7%104100%14 (100%)14 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
22365336.7%186496.8%280 (100%)276 (98.6%)0/0/0/00
Protein mutations:V483A (28287T>C)
Codon mutations:AAC470AAT (28249C>T), GTT483GCT (28287T>C), CGC491CGA (28312C>A), ATC492ATT (28315C>T), AGC517AGT (28390C>T), GTT526GTC (28417T>C), CGT530CGC (28429T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43