Version 2.14.5
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Escherichia virus DE3

Assembly

7430 (40 contig(s))
7.5
531
34.26 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Escherichia virus DE3 (Taxonomy ID: 2169967)
99.7577
98.9437
8
57

Alignment

14788.0 (NT) + 15351.0 (AA) = 30139.0
99.6957
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT2713830617.3%1478899.5%7430 (100%)7412 (99.8%)0/0
Mutations:422A>T, 580C>T, 589T>A, 761A>G, 802A>T, 859T>C, 898G>A, 937T>A, 958T>A, 1039G>A, 1180A>G, 1330G>T, 1331G>C, 1396G>A, 1578T>A, 1632A>G, 1788G>C, 1836T>C
CDS
1361100%227699.3%361 (100%)358 (99.2%)0/0/0/01
Protein mutations:S28C (422A>T), T141A (761A>G), A331P (1331G>C)
Codon mutations:AGC28TGC (422A>T), GTC80GTT (580C>T), ATT83ATA (589T>A), ACT141GCT (761A>G), ACA154ACT (802A>T), CAT173CAC (859T>C), GCG186GCA (898G>A), GCT199GCA (937T>A), ACT206ACA (958T>A), CTG233CTA (1039G>A), TCA280TCG (1180A>G), CTG330CTT (1330G>T), GCG331CCG (1331G>C), CAG352CAA (1396G>A)
114798.0%112399.1%147 (100%)145 (98.6%)0/0/0/00
Protein mutations:E81D (1788G>C)
Codon mutations:GTT11GTA (1578T>A), GCA29GCG (1632A>G), GAG81GAC (1788G>C), GAT97GAC (1836T>C)
173100%520100%73 (100%)73 (100%)0/0/0/01
15689.3%35897.8%50 (100%)49 (98.0%)0/0/0/01
19522714.5%22394.9%33 (100%)32 (97.0%)0/0/0/00
14818614.9%26296.0%39 (100%)39 (100%)0/0/0/00
13424.5%247100%34 (100%)34 (100%)0/0/0/00
54891.7%27298.2%44 (100%)44 (100%)0/0/0/01
15578.2%31295.7%43 (100%)42 (97.7%)0/0/0/01
2412373.2%61596.1%90 (100%)90 (100%)0/0/0/01
386744.8%18996.9%30 (100%)30 (100%)0/0/0/01
297042.0%29197.0%42 (100%)41 (97.6%)0/0/0/00
10428124.0%54198.5%72 (100%)72 (100%)0/0/0/00
135317.5%27995.5%41 (100%)40 (97.6%)0/0/0/00
85819.0%342100%51 (100%)51 (100%)0/0/0/00
256336.1%27295.8%39 (100%)39 (100%)0/0/0/00
13615613.2%12395.3%21 (100%)20 (95.2%)0/0/0/00
815488.3%89899.3%136 (100%)136 (100%)0/0/0/01
9913921.2%28195.6%41 (100%)40 (97.6%)0/0/0/00
10713411.3%18797.9%28 (100%)27 (96.4%)0/0/0/00
549328.4%28094.0%40 (100%)39 (97.5%)0/0/0/00
235019.3%212100%28 (100%)28 (100%)0/0/0/00
41283811.9%61899.4%102 (100%)101 (99.0%)0/0/0/00
3417154.1%85297.3%126 (100%)124 (98.4%)0/0/0/00
7717844.0%73298.3%88 (100%)87 (98.9%)0/0/0/00
117053.1%74296.5%119 (100%)117 (98.3%)0/0/0/00
290831.2%230498.1%354 (100%)350 (98.9%)0/0/0/00
Proteins
1361100%227699.3%361 (100%)358 (99.2%)0/0/0/01
Protein mutations:S28C (422A>T), T141A (761A>G), A331P (1331G>C)
Codon mutations:AGC28TGC (422A>T), GTC80GTT (580C>T), ATT83ATA (589T>A), ACT141GCT (761A>G), ACA154ACT (802A>T), CAT173CAC (859T>C), GCG186GCA (898G>A), GCT199GCA (937T>A), ACT206ACA (958T>A), CTG233CTA (1039G>A), TCA280TCG (1180A>G), CTG330CTT (1330G>T), GCG331CCG (1331G>C), CAG352CAA (1396G>A)
173100%520100%73 (100%)73 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
15689.3%35897.8%50 (100%)49 (98.0%)0/0/0/01
Protein mutations:none
Codon mutations:none
19522714.5%22394.9%33 (100%)32 (97.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
14818614.9%26296.0%39 (100%)39 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
13424.5%247100%34 (100%)34 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
54891.7%27298.2%44 (100%)44 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
15578.2%31295.7%43 (100%)42 (97.7%)0/0/0/01
Protein mutations:none
Codon mutations:none
2412373.2%61596.1%90 (100%)90 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
386744.8%18996.9%30 (100%)30 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
297042.0%29197.0%42 (100%)41 (97.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
10428124.0%54198.5%72 (100%)72 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
135317.5%27995.5%41 (100%)40 (97.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
85819.0%342100%51 (100%)51 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
256336.1%27295.8%39 (100%)39 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
13615613.2%12395.3%21 (100%)20 (95.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
815488.3%89899.3%136 (100%)136 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
9913921.2%28195.6%41 (100%)40 (97.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
10713411.3%18797.9%28 (100%)27 (96.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
549328.4%28094.0%40 (100%)39 (97.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
235019.3%212100%28 (100%)28 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
41283811.9%61899.4%102 (100%)101 (99.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
3417154.1%85297.3%126 (100%)124 (98.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
7717844.0%73298.3%88 (100%)87 (98.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
117053.1%74296.5%119 (100%)117 (98.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
290831.2%230498.1%354 (100%)350 (98.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43