Version 2.14.5
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus Wphi

Assembly

6428 (38 contig(s))
4.6
258
16.65 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus Wphi (Taxonomy ID: 103216)
99.72
98.6193
6
44

Alignment

12784.0 (NT) + 13654.0 (AA) = 26438.0
99.6344
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT1512811019.7%1278499.4%6428 (100%)6410 (99.7%)0/0
Mutations:9735C>T, 9737T>C, 9788A>G, 21841C>T, 21857A>G, 24814A>G, 24865G>A, 24871T>A, 24886A>G, 24967C>T, 24970T>C, 25036A>G, 25039G>A, 25175A>G, 25203T>C, 25248T>A, 27863C>T, 27902C>T
CDS
27834519.7%47499.2%68 (100%)68 (100%)0/0/0/01
22957948.2%196498.9%285 (100%)283 (99.3%)0/0/0/00
114412.6%24596.8%36 (100%)35 (97.2%)0/0/0/00
8632249.4%120999.0%177 (100%)176 (99.4%)0/0/0/00
8822543.5%70398.2%108 (100%)107 (99.1%)0/0/0/00
62326.5%12594.7%18 (100%)17 (94.4%)0/0/0/00
488035.1%21294.2%33 (100%)32 (97.0%)0/0/0/00
516625.9%28998.0%43 (100%)43 (100%)0/0/0/01
12719.0%13397.1%27 (100%)26 (96.3%)0/0/0/00
12415118.5%19095.5%28 (100%)28 (100%)0/0/0/01
8121243.4%59595.5%92 (100%)90 (97.8%)0/0/0/01
Protein mutations:H101Y (9735C>T 9737T>C)
Codon mutations:CAT101TAC (9735C>T 9737T>C), GCA118GCG (9788A>G)
14236.2%26996.4%42 (100%)41 (97.6%)0/0/0/00
7510014.7%19395.5%26 (100%)25 (96.2%)0/0/0/00
26536.4%45296.6%64 (100%)63 (98.4%)0/0/0/00
10617339.3%44998.9%68 (100%)68 (100%)0/0/0/01
113920.3%18095.7%29 (100%)28 (96.6%)0/0/0/00
155.4%32100%5 (100%)5 (100%)0/0/0/00
4280031.1%163996.8%254 (100%)250 (98.4%)0/0/0/00
4635245.4%114396.6%176 (100%)174 (98.9%)0/0/0/00
Protein mutations:T295A (21857A>G)
Codon mutations:AAC289AAT (21841C>T), ACG295GCG (21857A>G)
15857.5%30593.6%42 (100%)40 (95.2%)0/0/0/00
53554.4%21295.9%31 (100%)30 (96.8%)0/0/0/00
3916777.2%913100%129 (100%)129 (100%)0/0/0/01
12837.3%17294.0%28 (100%)26 (92.9%)0/0/0/00
Protein mutations:F12Y (25248T>A)
Codon mutations:TTC12TAC (25248T>A)
17362928.7%155695.9%219 (100%)216 (98.6%)0/0/0/00
Proteins
27834519.7%47499.2%68 (100%)68 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
22957948.2%196498.9%285 (100%)283 (99.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
114412.6%24596.8%36 (100%)35 (97.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
8632249.4%120999.0%177 (100%)176 (99.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
8822543.5%70398.2%108 (100%)107 (99.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
62326.5%12594.7%18 (100%)17 (94.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
488035.1%21294.2%33 (100%)32 (97.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
516625.9%28998.0%43 (100%)43 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
12719.0%13397.1%27 (100%)26 (96.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
12415118.5%19095.5%28 (100%)28 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
8121243.4%59595.5%92 (100%)90 (97.8%)0/0/0/01
Protein mutations:H101Y (9735C>T 9737T>C)
Codon mutations:CAT101TAC (9735C>T 9737T>C), GCA118GCG (9788A>G)
14236.2%26996.4%42 (100%)41 (97.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
7510014.7%19395.5%26 (100%)25 (96.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
26536.4%45296.6%64 (100%)63 (98.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
10617339.3%44998.9%68 (100%)68 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
113920.3%18095.7%29 (100%)28 (96.6%)0/0/0/00
Protein mutations:none
Codon mutations:none
155.4%32100%5 (100%)5 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
4280031.1%163996.8%254 (100%)250 (98.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
4635245.4%114396.6%176 (100%)174 (98.9%)0/0/0/00
Protein mutations:T295A (21857A>G)
Codon mutations:AAC289AAT (21841C>T), ACG295GCG (21857A>G)
15857.5%30593.6%42 (100%)40 (95.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
53554.4%21295.9%31 (100%)30 (96.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
3916777.2%913100%129 (100%)129 (100%)0/0/0/01
Protein mutations:none
Codon mutations:CAA55CAG (24814A>G), CGG72CGA (24865G>A), GTT74GTA (24871T>A), GAA79GAG (24886A>G), CGC106CGT (24967C>T), CGT107CGC (24970T>C), GAA129GAG (25036A>G), GAG130GAA (25039G>A)
12837.3%17294.0%28 (100%)26 (92.9%)0/0/0/00
Protein mutations:F12Y (25248T>A)
Codon mutations:TTC12TAC (25248T>A)
17362928.7%155695.9%219 (100%)216 (98.6%)0/0/0/00
Protein mutations:none
Codon mutations:GGC546.GT (27863C>T), GTC559GTT (27902C>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43