Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Shigella phage SfII

Assembly

3665 (13 contig(s))
7.4
269
17.36 rpm (after QC)
2
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Shigella phage SfII (Taxonomy ID: 66284)
92.3391
90.9902
4
58

Alignment

6210.0 (NT) + 6802.0 (AA) = 13012.0
88.0796
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT48403518.8%621084.7%3665 (99.9%)3387 (92.3%)3/0
Mutations:
273G>A 1242T>C 1264T>C 1265G>A 1834T>C 1858C>A 1892A>G 1921A>G 1948A>G 2228C>A 2288C>Y 2295A>R 2332T>C 8620A>G 9899A>T 10226A>T 10229T>G 10292C>T 10313C>T 10319T>C 10326A>C 10358A>T 10448G>T 10451T>C 10514T>C 10523T>C 10649T>C 10710A>T 10712C>A 10713G>T 10714T>C 10718G>C 10722G>A 10723A>C 10724T>G 10726A>T 10757T>C 10760A>C 10790T>C 10811T>C 10820T>C 10871A>G 10943A>T 11030T>C 11063C>T 20439T>C 20442C>A 20445G>T 20446C>T 20458C>A 20459C>A 20465G>A 20466C>G 20469G>C 20473G>A 20487C>T 20493C>T 20500T>C 20502G>C 20509A>G 20511A>G 20512C>T 20513G>C 20514A>T 20521A>C 20523T>C 20526T>C 20532T>C 20538A>T 20543A>G 20547T>C 20552C>T 20553A>T 20560A>C 20565A>G 20567A>G 20568T>C 20571A>G 20577G>A 20578T>C 20579G>T 20586T>C 20592T>C 20604C>T 20607T>A 20613T>C 20615T>C 20622A>G 20628T>C 20631C>A 20634T>C 20637T>C 20646C>G 20647C>A 20649C>T 20653G>T 20655C>T 20658T>A 20660G>A 20661C>T 20664T>G 20667C>T 20670C>A 20671C>T 20674A>C 20680C>T 20681A>G 20683G>A 20685C>A 20686T>G 20688C>T 20691G>T 20694A>G 20695A>G 20701A>C 20703T>G 20703_20704insCAA 20706C>T 20708A>C 20709G>A 20710G>A 20711C>A 20713G>A 20715G>A 20716G>C 20718A>G 20719A>C 20720T>A 20721C>A 20724T>C 20730G>T 20731G>A 20734G>A 20736G>T 20744G>A 20745G>A 20748C>G 20749A>G 20751T>A 20752T>A 20753C>A 20754T>C 20757C>A 20758C>A 20759G>A 20760G>A 20761A>G 20763T>A 20764C>A 20766T>G 20769T>A 20770G>A 20772T>C 20775T>C 20778T>C 20781T>G 20787T>A 20790T>G 20793T>C 20796A>G 20798G>A 20802A>C 20808C>T 20811T>G 20814T>C 20817C>A 20825A>T 20826G>C 20829A>C 20844T>C 20847T>G 20937C>T 20942A>G 20944A>C 20949A>G 20952C>G 20955G>T 20956G>T 20962A>G 20963A>C 20964A>G 20965A>G 20968C>T 20969G>A 20971T>G 20973G>C 20975A>G 20976G>T 20979T>C 20982A>T 20985A>T 20995C>T 20997T>G 20998T>C 21000T>C 21004C>A 21006T>A 21007T>G 21008C>A 21009A>G 21012T>G 21019A>C 21021A>G 21023A>G 21026G>A 21027C>T 21029G>A 21030G>A 21034G>T 21036C>G 21037A>C 21039A>T 21040G>T 21042G>T 21043A>G 21045G>T 21046C>A 21047C>T 21048G>A 21050G>C 21052T>A 21053T>G 21058A>T 21061A>C 21062C>A 21064G>A 21065A>T 21072A>T 21073C>G 21074A>C 21075A>C 21077A>G 21078A>G 21079G>T 21081C>G 21084A>G 21086G>C 21087C>A 21089G>A 21113A>G 21114T>C 21119C>A 21123G>C 21129T>A 21130G>C 21132C>G 21133A>C 21134A>G 21136A>G 21147A>G 21148C>T 21150G>A 21156T>C 21158G>A 21159A>C 21160A>C 21166C>T 21171A>T 21180C>A 21183T>A 21184C>A 21201A>G 21204C>T 21210T>G 21213T>C 21216C>T 30485A>G 30538G>A 39833T>C 39836C>T 39848A>G 39925C>T 39927A>C 39938G>A 39943T>C 39946C>T 39949T>C 39950A>C 39951G>A
CDS
15231.5%36298.9%52 (100%)51 (98.1%)0/0/0/00
Protein mutations:
E50K (273G>A)
Codon mutations:
GAA50AAA (273G>A)
14857835.1%132994.5%203 (100%)195 (96.1%)0/0/1/00
Protein mutations:
V209A (1242T>C) A217T (1265G>A) M426V (1892A>G) Q538K (2228C>A)
Codon mutations:
GTG209GCG (1242T>C) CAT216CAC (1264T>C) GCC217ACC (1265G>A) TAT406TAC (1834T>C) CGC414CGA (1858C>A) ATG426GTG (1892A>G) GCA435GCG (1921A>G) GAA444GAG (1948A>G) CAG538AAG (2228C>A) CTG558YTG (2288C>Y) GAG560GRG (2295A>R) TAT572TAC (2332T>C)
1771875.9%8293.2%11 (100%)11 (100%)0/0/0/01
15087.7%355100%50 (100%)50 (100%)0/0/0/00
2292728.8%28896.0%44 (100%)43 (97.7%)0/0/0/00
689025.6%153100%23 (100%)23 (100%)0/0/0/01
140866.0%243998.0%404 (100%)397 (98.3%)0/0/0/01
Protein mutations:
S83R (10326A>C) S211* (10710A>T 10712C>A) V212S (10713G>T 10714T>C) M213I (10718G>C) D215T (10722G>A 10723A>C 10724T>G) Q216L (10726A>T)
Codon mutations:
GCA49GCT (10226A>T) GCT50GCG (10229T>G) GTC71GTT (10292C>T) GGC78GGT (10313C>T) GTT80GTC (10319T>C) AGC83CGC (10326A>C) GGA93GGT (10358A>T) CTG123CTT (10448G>T) GGT124GGC (10451T>C) GCT145GCC (10514T>C) GCT148GCC (10523T>C) AGT190AGC (10649T>C) AGC211TGA (10710A>T 10712C>A) GTC212TCC (10713G>T 10714T>C) ATG213ATC (10718G>C) GAT215ACG (10722G>A 10723A>C 10724T>G) CAG216CTG (10726A>T) AAT226AAC (10757T>C) GCA227GCC (10760A>C) AGT237AGC (10790T>C) GTT244GTC (10811T>C) GTT247GTC (10820T>C) GGA264GGG (10871A>G) ACA288ACT (10943A>T) GAT317GAC (11030T>C) AGC328AGT (11063C>T)
4230459.2%114268.3%235 (99.6%)156 (66.1%)1/0/0/01
Protein mutations:
H47Y (20446C>T) P51N (20458C>A 20459C>A) R53Q (20465G>A 20466C>G) D56N (20473G>A) K68E (20509A>G 20511A>G) R69S (20512C>T 20513G>C 20514A>T) N72H (20521A>C 20523T>C) K79R (20543A>G) T82I (20552C>T 20553A>T) M85L (20560A>C) N87S (20567A>G 20568T>C) W91L (20578T>C 20579G>T) F103S (20615T>C) L114I (20647C>A 20649C>T) D116Y (20653G>T 20655C>T) R118H (20660G>A 20661C>T) M123L (20674A>C) Q125W (20680C>T 20681A>G) V126I (20683G>A 20685C>A) F127V (20686T>G 20688C>T) K130E (20695A>G) N132Q (20701A>C 20703T>G) N132_N133insQ (20703_20704insCAA) E134A (20708A>C 20709G>A) A135K (20710G>A 20711C>A) V136I (20713G>A 20715G>A) E137Q (20716G>C 20718A>G) I138Q (20719A>C 20720T>A 20721C>A) D142N (20731G>A) A143T (20734G>A 20736G>T) G146E (20744G>A 20745G>A) I148V (20749A>G 20751T>A) S149N (20752T>A 20753C>A 20754T>C) R151K (20758C>A 20759G>A 20760G>A) T152A (20761A>G 20763T>A) V155I (20770G>A 20772T>C) S164N (20798G>A) Q173L (20825A>T 20826G>C) E212G (20942A>G) T213P (20944A>C) A217S (20956G>T) K219A (20962A>G 20963A>C 20964A>G) K220E (20965A>G) R221Y (20968C>T 20969G>A) S222A (20971T>G 20973G>C) Q223R (20975A>G 20976G>T) E225D (20982A>T) Y231H (20998T>C 21000T>C) H233K (21004C>A 21006T>A) S234E (21007T>G 21008C>A 21009A>G) K239R (21023A>G) S240N (21026G>A 21027C>T) R241K (21029G>A 21030G>A) A243S (21034G>T 21036C>G) G245C (21040G>T 21042G>T) R246G (21043A>G 21045G>T) P247I (21046C>A 21047C>T 21048G>A) G248A (21050G>C) L249R (21052T>A 21053T>G) T251S (21058A>T) T252Q (21061A>C 21062C>A) E253I (21064G>A 21065A>T) E255D (21072A>T) Q256A (21073C>G 21074A>C 21075A>C) K257R (21077A>G 21078A>G) A258S (21079G>T 21081C>G) G260A (21086G>C 21087C>A) R261K (21089G>A) N269S (21113A>G 21114T>C) A271D (21119C>A) E272D (21123G>C) N274K (21129T>A) A275P (21130G>C 21132C>G) K276R (21133A>C 21134A>G) K277E (21136A>G) R284H (21158G>A 21159A>C) Q287* (21166C>T) N291K (21180C>A) F292L (21183T>A)
Codon mutations:
ATT44ATC (20439T>C) GGC45GGA (20442C>A) CGG46CGT (20445G>T) CAT47TAT (20446C>T) CCT51AAT (20458C>A 20459C>A) CGC53CAG (20465G>A 20466C>G) GTG54GTC (20469G>C) GAT56AAT (20473G>A) CGC60CGT (20487C>T) GAC62GAT (20493C>T) TTG65CTC (20500T>C 20502G>C) AAA68GAG (20509A>G 20511A>G) CGA69TCT (20512C>T 20513G>C 20514A>T) AAT72CAC (20521A>C 20523T>C) GAT73GAC (20526T>C) CCT75CCC (20532T>C) ATA77ATT (20538A>T) AAA79AGA (20543A>G) AAT80AAC (20547T>C) ACA82ATT (20552C>T 20553A>T) ATG85CTG (20560A>C) ACA86ACG (20565A>G) AAT87AGC (20567A>G 20568T>C) AAA88AAG (20571A>G) TCG90TCA (20577G>A) TGG91CTG (20578T>C 20579G>T) GTT93GTC (20586T>C) GCT95GCC (20592T>C) AGC99AGT (20604C>T) GGT100GGA (20607T>A) CCT102CCC (20613T>C) TTT103TCT (20615T>C) GAA105GAG (20622A>G) CAT107CAC (20628T>C) GTC108GTA (20631C>A) CTT109CTC (20634T>C) CGT110CGC (20637T>C) CTC113CTG (20646C>G) CTC114ATT (20647C>A 20649C>T) GAC116TAT (20653G>T 20655C>T) GGT117GGA (20658T>A) CGC118CAT (20660G>A 20661C>T) TCT119TCG (20664T>G) ATC120ATT (20667C>T) CCC121CCA (20670C>A) CTG122TTG (20671C>T) ATG123CTG (20674A>C) CAG125TGG (20680C>T 20681A>G) GTC126ATA (20683G>A 20685C>A) TTC127GTT (20686T>G 20688C>T) CCG128CCT (20691G>T) TCA129TCG (20694A>G) AAA130GAA (20695A>G) AAT132CAG (20701A>C 20703T>G) AAT132_AAC133insCAA (20703_20704insCAA) AAC133AAT (20706C>T) GAG134GCA (20708A>C 20709G>A) GCG135AAG (20710G>A 20711C>A) GTG136ATA (20713G>A 20715G>A) GAA137CAG (20716G>C 20718A>G) ATC138CAA (20719A>C 20720T>A 20721C>A) GCT139GCC (20724T>C) CTG141CTT (20730G>T) GAT142AAT (20731G>A) GCG143ACT (20734G>A 20736G>T) GGG146GAA (20744G>A 20745G>A) GCC147GCG (20748C>G) ATT148GTA (20749A>G 20751T>A) TCT149AAC (20752T>A 20753C>A 20754T>C) CCC150CCA (20757C>A) CGG151AAA (20758C>A 20759G>A 20760G>A) ACT152GCA (20761A>G 20763T>A) CGT153AGG (20764C>A 20766T>G) GTT154GTA (20769T>A) GTT155ATC (20770G>A 20772T>C) ATT156ATC (20775T>C) GTT157GTC (20778T>C) ACT158ACG (20781T>G) GCT160GCA (20787T>A) GGT161GGG (20790T>G) TTT162TTC (20793T>C) CAA163CAG (20796A>G) AGT164AAT (20798G>A) GCA165GCC (20802A>C) TTC167TTT (20808C>T) CGT168CGG (20811T>G) CAT169CAC (20814T>C) ATC170ATA (20817C>A) CAG173CTC (20825A>T 20826G>C) GGA174GGC (20829A>C) GGT179GGC (20844T>C) CGT180CGG (20847T>G) TAC210TAT (20937C>T) GAG212GGG (20942A>G) ACG213CCG (20944A>C) GGA214GGG (20949A>G) ACC215ACG (20952C>G) CTG216CTT (20955G>T) GCC217TCC (20956G>T) AAA219GCG (20962A>G 20963A>C 20964A>G) AAA220GAA (20965A>G) CGC221TAC (20968C>T 20969G>A) TCG222GCC (20971T>G 20973G>C) CAG223CGT (20975A>G 20976G>T) TGT224TGC (20979T>C) GAA225GAT (20982A>T) GGA226GGT (20985A>T) CTT230TTG (20995C>T 20997T>G) TAT231CAC (20998T>C 21000T>C) CAT233AAA (21004C>A 21006T>A) TCA234GAG (21007T>G 21008C>A 21009A>G) CCT235CCG (21012T>G) AGA238CGG (21019A>C 21021A>G) AAA239AGA (21023A>G) AGC240AAT (21026G>A 21027C>T) AGG241AAA (21029G>A 21030G>A) GCC243TCG (21034G>T 21036C>G) AGA244CGT (21037A>C 21039A>T) GGG245TGT (21040G>T 21042G>T) AGG246GGT (21043A>G 21045G>T) CCG247ATA (21046C>A 21047C>T 21048G>A) GGC248GCC (21050G>C) TTA249AGA (21052T>A 21053T>G) ACA251TCA (21058A>T) ACG252CAG (21061A>C 21062C>A) GAA253ATA (21064G>A 21065A>T) GAA255GAT (21072A>T) CAA256GCC (21073C>G 21074A>C 21075A>C) AAA257AGG (21077A>G 21078A>G) GCC258TCG (21079G>T 21081C>G) GCA259GCG (21084A>G) GGC260GCA (21086G>C 21087C>A) AGA261AAA (21089G>A) AAT269AGC (21113A>G 21114T>C) GCT271GAT (21119C>A) GAG272GAC (21123G>C) AAT274AAA (21129T>A) GCC275CCG (21130G>C 21132C>G) AAA276CGA (21133A>C 21134A>G) AAA277GAA (21136A>G) AAA280AAG (21147A>G) CTG281TTA (21148C>T 21150G>A) AGT283AGC (21156T>C) CGA284CAC (21158G>A 21159A>C) AGA285CGA (21160A>C) CAG287TAG (21166C>T) ATA288ATT (21171A>T) AAC291AAA (21180C>A) TTT292TTA (21183T>A) CGG293AGG (21184C>A) GAA298GAG (21201A>G) CGC299CGT (21204C>T) GGT301GGG (21210T>G) TTT302TTC (21213T>C) GGC303GGT (21216C>T)
488533.6%25691.4%38 (100%)37 (97.4%)0/0/0/00
Protein mutations:
S82N (30538G>A)
Codon mutations:
TTA64TTG (30485A>G) AGC82AAC (30538G>A)
64217.7%25483.8%37 (100%)34 (91.9%)0/0/0/00
Protein mutations:
F8C (39927A>C) G9R (39925C>T)
Codon mutations:
ATG1G.. (39949T>C) GTC2A.. (39946C>T) ACA3G.. (39943T>C) CTC4..T (39938G>A) TTC8TGC (39927A>C) GGG9AGG (39925C>T) AGT34AGC (39848A>G) GAG38GAA (39836C>T) CTA39CTG (39833T>C)
12322.8%142100%23 (100%)23 (100%)0/0/0/00
Proteins
15231.5%36298.9%52 (100%)51 (98.1%)0/0/0/00
Protein mutations:
E50K (273G>A)
Codon mutations:
GAA50AAA (273G>A)
14857835.1%132994.5%203 (100%)195 (96.1%)0/0/1/00
Protein mutations:
V209A (1242T>C) A217T (1265G>A) M426V (1892A>G) Q538K (2228C>A)
Codon mutations:
GTG209GCG (1242T>C) CAT216CAC (1264T>C) GCC217ACC (1265G>A) TAT406TAC (1834T>C) CGC414CGA (1858C>A) ATG426GTG (1892A>G) GCA435GCG (1921A>G) GAA444GAG (1948A>G) CAG538AAG (2228C>A) CTG558YTG (2288C>Y) GAG560GRG (2295A>R) TAT572TAC (2332T>C)
1771875.9%8293.2%11 (100%)11 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
15087.7%355100%50 (100%)50 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
2292728.8%28896.0%44 (100%)43 (97.7%)0/0/0/00
Protein mutations:none
Codon mutations:
ACA268ACG (8620A>G)
689025.6%153100%23 (100%)23 (100%)0/0/0/01
Protein mutations:none
Codon mutations:
GCA77GCT (9899A>T)
140866.0%243998.0%404 (100%)397 (98.3%)0/0/0/01
Protein mutations:
S83R (10326A>C) S211* (10710A>T 10712C>A) V212S (10713G>T 10714T>C) M213I (10718G>C) D215T (10722G>A 10723A>C 10724T>G) Q216L (10726A>T)
Codon mutations:
GCA49GCT (10226A>T) GCT50GCG (10229T>G) GTC71GTT (10292C>T) GGC78GGT (10313C>T) GTT80GTC (10319T>C) AGC83CGC (10326A>C) GGA93GGT (10358A>T) CTG123CTT (10448G>T) GGT124GGC (10451T>C) GCT145GCC (10514T>C) GCT148GCC (10523T>C) AGT190AGC (10649T>C) AGC211TGA (10710A>T 10712C>A) GTC212TCC (10713G>T 10714T>C) ATG213ATC (10718G>C) GAT215ACG (10722G>A 10723A>C 10724T>G) CAG216CTG (10726A>T) AAT226AAC (10757T>C) GCA227GCC (10760A>C) AGT237AGC (10790T>C) GTT244GTC (10811T>C) GTT247GTC (10820T>C) GGA264GGG (10871A>G) ACA288ACT (10943A>T) GAT317GAC (11030T>C) AGC328AGT (11063C>T)
4230459.2%114268.3%235 (99.6%)156 (66.1%)1/0/0/01
Protein mutations:
H47Y (20446C>T) P51N (20458C>A 20459C>A) R53Q (20465G>A 20466C>G) D56N (20473G>A) K68E (20509A>G 20511A>G) R69S (20512C>T 20513G>C 20514A>T) N72H (20521A>C 20523T>C) K79R (20543A>G) T82I (20552C>T 20553A>T) M85L (20560A>C) N87S (20567A>G 20568T>C) W91L (20578T>C 20579G>T) F103S (20615T>C) L114I (20647C>A 20649C>T) D116Y (20653G>T 20655C>T) R118H (20660G>A 20661C>T) M123L (20674A>C) Q125W (20680C>T 20681A>G) V126I (20683G>A 20685C>A) F127V (20686T>G 20688C>T) K130E (20695A>G) N132Q (20701A>C 20703T>G) N132_N133insQ (20703_20704insCAA) E134A (20708A>C 20709G>A) A135K (20710G>A 20711C>A) V136I (20713G>A 20715G>A) E137Q (20716G>C 20718A>G) I138Q (20719A>C 20720T>A 20721C>A) D142N (20731G>A) A143T (20734G>A 20736G>T) G146E (20744G>A 20745G>A) I148V (20749A>G 20751T>A) S149N (20752T>A 20753C>A 20754T>C) R151K (20758C>A 20759G>A 20760G>A) T152A (20761A>G 20763T>A) V155I (20770G>A 20772T>C) S164N (20798G>A) Q173L (20825A>T 20826G>C) E212G (20942A>G) T213P (20944A>C) A217S (20956G>T) K219A (20962A>G 20963A>C 20964A>G) K220E (20965A>G) R221Y (20968C>T 20969G>A) S222A (20971T>G 20973G>C) Q223R (20975A>G 20976G>T) E225D (20982A>T) Y231H (20998T>C 21000T>C) H233K (21004C>A 21006T>A) S234E (21007T>G 21008C>A 21009A>G) K239R (21023A>G) S240N (21026G>A 21027C>T) R241K (21029G>A 21030G>A) A243S (21034G>T 21036C>G) G245C (21040G>T 21042G>T) R246G (21043A>G 21045G>T) P247I (21046C>A 21047C>T 21048G>A) G248A (21050G>C) L249R (21052T>A 21053T>G) T251S (21058A>T) T252Q (21061A>C 21062C>A) E253I (21064G>A 21065A>T) E255D (21072A>T) Q256A (21073C>G 21074A>C 21075A>C) K257R (21077A>G 21078A>G) A258S (21079G>T 21081C>G) G260A (21086G>C 21087C>A) R261K (21089G>A) N269S (21113A>G 21114T>C) A271D (21119C>A) E272D (21123G>C) N274K (21129T>A) A275P (21130G>C 21132C>G) K276R (21133A>C 21134A>G) K277E (21136A>G) R284H (21158G>A 21159A>C) Q287* (21166C>T) N291K (21180C>A) F292L (21183T>A)
Codon mutations:
ATT44ATC (20439T>C) GGC45GGA (20442C>A) CGG46CGT (20445G>T) CAT47TAT (20446C>T) CCT51AAT (20458C>A 20459C>A) CGC53CAG (20465G>A 20466C>G) GTG54GTC (20469G>C) GAT56AAT (20473G>A) CGC60CGT (20487C>T) GAC62GAT (20493C>T) TTG65CTC (20500T>C 20502G>C) AAA68GAG (20509A>G 20511A>G) CGA69TCT (20512C>T 20513G>C 20514A>T) AAT72CAC (20521A>C 20523T>C) GAT73GAC (20526T>C) CCT75CCC (20532T>C) ATA77ATT (20538A>T) AAA79AGA (20543A>G) AAT80AAC (20547T>C) ACA82ATT (20552C>T 20553A>T) ATG85CTG (20560A>C) ACA86ACG (20565A>G) AAT87AGC (20567A>G 20568T>C) AAA88AAG (20571A>G) TCG90TCA (20577G>A) TGG91CTG (20578T>C 20579G>T) GTT93GTC (20586T>C) GCT95GCC (20592T>C) AGC99AGT (20604C>T) GGT100GGA (20607T>A) CCT102CCC (20613T>C) TTT103TCT (20615T>C) GAA105GAG (20622A>G) CAT107CAC (20628T>C) GTC108GTA (20631C>A) CTT109CTC (20634T>C) CGT110CGC (20637T>C) CTC113CTG (20646C>G) CTC114ATT (20647C>A 20649C>T) GAC116TAT (20653G>T 20655C>T) GGT117GGA (20658T>A) CGC118CAT (20660G>A 20661C>T) TCT119TCG (20664T>G) ATC120ATT (20667C>T) CCC121CCA (20670C>A) CTG122TTG (20671C>T) ATG123CTG (20674A>C) CAG125TGG (20680C>T 20681A>G) GTC126ATA (20683G>A 20685C>A) TTC127GTT (20686T>G 20688C>T) CCG128CCT (20691G>T) TCA129TCG (20694A>G) AAA130GAA (20695A>G) AAT132CAG (20701A>C 20703T>G) AAT132_AAC133insCAA (20703_20704insCAA) AAC133AAT (20706C>T) GAG134GCA (20708A>C 20709G>A) GCG135AAG (20710G>A 20711C>A) GTG136ATA (20713G>A 20715G>A) GAA137CAG (20716G>C 20718A>G) ATC138CAA (20719A>C 20720T>A 20721C>A) GCT139GCC (20724T>C) CTG141CTT (20730G>T) GAT142AAT (20731G>A) GCG143ACT (20734G>A 20736G>T) GGG146GAA (20744G>A 20745G>A) GCC147GCG (20748C>G) ATT148GTA (20749A>G 20751T>A) TCT149AAC (20752T>A 20753C>A 20754T>C) CCC150CCA (20757C>A) CGG151AAA (20758C>A 20759G>A 20760G>A) ACT152GCA (20761A>G 20763T>A) CGT153AGG (20764C>A 20766T>G) GTT154GTA (20769T>A) GTT155ATC (20770G>A 20772T>C) ATT156ATC (20775T>C) GTT157GTC (20778T>C) ACT158ACG (20781T>G) GCT160GCA (20787T>A) GGT161GGG (20790T>G) TTT162TTC (20793T>C) CAA163CAG (20796A>G) AGT164AAT (20798G>A) GCA165GCC (20802A>C) TTC167TTT (20808C>T) CGT168CGG (20811T>G) CAT169CAC (20814T>C) ATC170ATA (20817C>A) CAG173CTC (20825A>T 20826G>C) GGA174GGC (20829A>C) GGT179GGC (20844T>C) CGT180CGG (20847T>G) TAC210TAT (20937C>T) GAG212GGG (20942A>G) ACG213CCG (20944A>C) GGA214GGG (20949A>G) ACC215ACG (20952C>G) CTG216CTT (20955G>T) GCC217TCC (20956G>T) AAA219GCG (20962A>G 20963A>C 20964A>G) AAA220GAA (20965A>G) CGC221TAC (20968C>T 20969G>A) TCG222GCC (20971T>G 20973G>C) CAG223CGT (20975A>G 20976G>T) TGT224TGC (20979T>C) GAA225GAT (20982A>T) GGA226GGT (20985A>T) CTT230TTG (20995C>T 20997T>G) TAT231CAC (20998T>C 21000T>C) CAT233AAA (21004C>A 21006T>A) TCA234GAG (21007T>G 21008C>A 21009A>G) CCT235CCG (21012T>G) AGA238CGG (21019A>C 21021A>G) AAA239AGA (21023A>G) AGC240AAT (21026G>A 21027C>T) AGG241AAA (21029G>A 21030G>A) GCC243TCG (21034G>T 21036C>G) AGA244CGT (21037A>C 21039A>T) GGG245TGT (21040G>T 21042G>T) AGG246GGT (21043A>G 21045G>T) CCG247ATA (21046C>A 21047C>T 21048G>A) GGC248GCC (21050G>C) TTA249AGA (21052T>A 21053T>G) ACA251TCA (21058A>T) ACG252CAG (21061A>C 21062C>A) GAA253ATA (21064G>A 21065A>T) GAA255GAT (21072A>T) CAA256GCC (21073C>G 21074A>C 21075A>C) AAA257AGG (21077A>G 21078A>G) GCC258TCG (21079G>T 21081C>G) GCA259GCG (21084A>G) GGC260GCA (21086G>C 21087C>A) AGA261AAA (21089G>A) AAT269AGC (21113A>G 21114T>C) GCT271GAT (21119C>A) GAG272GAC (21123G>C) AAT274AAA (21129T>A) GCC275CCG (21130G>C 21132C>G) AAA276CGA (21133A>C 21134A>G) AAA277GAA (21136A>G) AAA280AAG (21147A>G) CTG281TTA (21148C>T 21150G>A) AGT283AGC (21156T>C) CGA284CAC (21158G>A 21159A>C) AGA285CGA (21160A>C) CAG287TAG (21166C>T) ATA288ATT (21171A>T) AAC291AAA (21180C>A) TTT292TTA (21183T>A) CGG293AGG (21184C>A) GAA298GAG (21201A>G) CGC299CGT (21204C>T) GGT301GGG (21210T>G) TTT302TTC (21213T>C) GGC303GGT (21216C>T)
488533.6%25691.4%38 (100%)37 (97.4%)0/0/0/00
Protein mutations:
S82N (30538G>A)
Codon mutations:
TTA64TTG (30485A>G) AGC82AAC (30538G>A)
64217.7%25483.8%37 (100%)34 (91.9%)0/0/0/00
Protein mutations:
F8C (39927A>C) G9R (39925C>T)
Codon mutations:
ATG1G.. (39949T>C) GTC2A.. (39946C>T) ACA3G.. (39943T>C) CTC4..T (39938G>A) TTC8TGC (39927A>C) GGG9AGG (39925C>T) AGT34AGC (39848A>G) GAG38GAA (39836C>T) CTA39CTG (39833T>C)
12322.8%142100%23 (100%)23 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43