Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus P24E6b

Assembly

1064 (5 contig(s))
24.2
236
15.23 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus P24E6b (Taxonomy ID: 2844222)
89.8496
90.9348
0
44

Alignment

1696.0 (NT) + 2158.0 (AA) = 3854.0
86.2578
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT12549165843.4%169679.7%1064 (100%)956 (89.8%)0/0
Mutations:
12589C>G 12616C>T 12654A>G 12681T>C 12687G>T 12721G>A 12725C>G 12741T>C 12752T>A 12759G>A 12760A>C 12762A>T 12768C>A 12772G>T 12774A>G 12777C>T 12780G>C 12783T>C 12790G>A 12791C>T 12792C>T 12793A>G 12794A>G 12795T>A 12797G>C 12798G>A 12807C>T 12809C>A 12816T>A 12819G>A 12825C>A 12827T>C 12834T>C 12837C>T 12838A>G 12839C>T 12843A>G 12844T>G 12848C>T 12849T>A 12852C>G 12855C>A 12856C>G 12859T>C 12861G>A 12870T>C 12873A>T 12879G>T 12882T>C 12883A>T 12885G>T 12888T>C 12891A>T 12893C>G 12897C>A 12900G>A 12902A>C 12904C>T 12906T>A 12910T>C 12916C>A 12918T>A 12924T>C 12927C>T 12933T>A 12939T>C 12942A>T 12944A>T 12951C>A 12952A>C 12957T>C 13381G>C 13383A>G 13384G>A 13386A>T 13395C>A 13396T>A 13397T>A 13398T>C 13401G>T 13407T>G 13408C>T 13410G>A 13411A>G 13413T>G 13414C>T 13419C>T 13443A>C 13444T>A 13449T>C 13464C>A 13497G>T 13503T>G 13518C>T 13570G>T 13575T>C 13593C>T 13597A>T 13602G>A 13641G>C 13728T>C 13864T>C 13938G>A 16457C>A 16459G>A 16478G>A 16519A>T 16562G>T
CDS
23068233.5%192890.0%308 (100%)280 (90.9%)0/0/1/00
Protein mutations:
L243V (12589C>G) P252S (12616C>T) A287T (12721G>A) A288G (12725C>G) F297Y (12752T>A) V304L (12772G>T 12774A>G) M306I (12780G>C) A310I (12790G>A 12791C>T 12792C>T) N311G (12793A>G 12794A>G 12795T>A) R312T (12797G>C 12798G>A) T316N (12809C>A) V322A (12827T>C) T326V (12838A>G 12839C>T) S328A (12844T>G) A329V (12848C>T 12849T>A) P332A (12856C>G) T341S (12883A>T 12885G>T) A344G (12893C>G) H347P (12902A>C) Y361F (12944A>T) N364H (12952A>C) F512N (13396T>A 13397T>A 13398T>C) N517E (13411A>G 13413T>G) S528T (13444T>A) A570S (13570G>T) T579S (13597A>T)
Codon mutations:
CTT243GTT (12589C>G) CCT252TCT (12616C>T) ACA264ACG (12654A>G) AAT273AAC (12681T>C) CCG275CCT (12687G>T) GCT287ACT (12721G>A) GCC288GGC (12725C>G) GGT293GGC (12741T>C) TTT297TAT (12752T>A) ACG299ACA (12759G>A) AGA300CGT (12760A>C 12762A>T) GGC302GGA (12768C>A) GTA304TTG (12772G>T 12774A>G) TAC305TAT (12777C>T) ATG306ATC (12780G>C) CGT307CGC (12783T>C) GCC310ATT (12790G>A 12791C>T 12792C>T) AAT311GGA (12793A>G 12794A>G 12795T>A) AGG312ACA (12797G>C 12798G>A) GGC315GGT (12807C>T) ACT316AAT (12809C>A) GGT318GGA (12816T>A) CCG319CCA (12819G>A) GGC321GGA (12825C>A) GTA322GCA (12827T>C) CGT324CGC (12834T>C) CAC325CAT (12837C>T) ACT326GTT (12838A>G 12839C>T) CAA327CAG (12843A>G) TCT328GCT (12844T>G) GCT329GTA (12848C>T 12849T>A) ACC330ACG (12852C>G) CGC331CGA (12855C>A) CCT332GCT (12856C>G) TTG333CTA (12859T>C 12861G>A) ACT336ACC (12870T>C) ATA337ATT (12873A>T) CTG339CTT (12879G>T) AAT340AAC (12882T>C) ACG341TCT (12883A>T 12885G>T) CTT342CTC (12888T>C) GGA343GGT (12891A>T) GCC344GGC (12893C>G) GCC345GCA (12897C>A) GAG346GAA (12900G>A) CAT347CCT (12902A>C) CTT348TTA (12904C>T 12906T>A) TTA350CTA (12910T>C) CGT352AGA (12916C>A 12918T>A) AGT354AGC (12924T>C) AGC355AGT (12927C>T) GCT357GCA (12933T>A) GCT359GCC (12939T>C) TCA360TCT (12942A>T) TAT361TTT (12944A>T) CGC363CGA (12951C>A) AAT364CAT (12952A>C) TAT365TAC (12957T>C) GAA507C.G (13381G>C 13383A>G) GTA508A.T (13384G>A 13386A>T) TCC511..A (13395C>A) TTT512AAC (13396T>A 13397T>A 13398T>C) TCG513.CT (13401G>T) CCT515CCG (13407T>G) CTG516TTA (13408C>T 13410G>A) AAT517GAG (13411A>G 13413T>G) CTG518TTG (13414C>T) GGC519GGT (13419C>T) CTA527CTC (13443A>C) TCC528ACC (13444T>A) AGT529AGC (13449T>C) ACC534ACA (13464C>A) GTG545GTT (13497G>T) CTT547CTG (13503T>G) AAC552AAT (13518C>T) GCA570TCA (13570G>T) GTT571GTC (13575T>C) TCC577TCT (13593C>T) ACG579TCG (13597A>T) GGG580GGA (13602G>A) GCG593GCC (13641G>C) GCT622GCC (13728T>C) TTG668CTG (13864T>C) GGG692..A (13938G>A)
529611.3%23085.8%45 (100%)41 (91.1%)0/0/0/00
Protein mutations:
Q54K (16457C>A 16459G>A) G61S (16478G>A) G89C (16562G>T)
Codon mutations:
CAG54AAA (16457C>A 16459G>A) GGT61AGT (16478G>A) GCA74GCT (16519A>T) GGC89TGC (16562G>T)
Proteins
23068233.5%192890.0%308 (100%)280 (90.9%)0/0/1/00
Protein mutations:
L243V (12589C>G) P252S (12616C>T) A287T (12721G>A) A288G (12725C>G) F297Y (12752T>A) V304L (12772G>T 12774A>G) M306I (12780G>C) A310I (12790G>A 12791C>T 12792C>T) N311G (12793A>G 12794A>G 12795T>A) R312T (12797G>C 12798G>A) T316N (12809C>A) V322A (12827T>C) T326V (12838A>G 12839C>T) S328A (12844T>G) A329V (12848C>T 12849T>A) P332A (12856C>G) T341S (12883A>T 12885G>T) A344G (12893C>G) H347P (12902A>C) Y361F (12944A>T) N364H (12952A>C) F512N (13396T>A 13397T>A 13398T>C) N517E (13411A>G 13413T>G) S528T (13444T>A) A570S (13570G>T) T579S (13597A>T)
Codon mutations:
CTT243GTT (12589C>G) CCT252TCT (12616C>T) ACA264ACG (12654A>G) AAT273AAC (12681T>C) CCG275CCT (12687G>T) GCT287ACT (12721G>A) GCC288GGC (12725C>G) GGT293GGC (12741T>C) TTT297TAT (12752T>A) ACG299ACA (12759G>A) AGA300CGT (12760A>C 12762A>T) GGC302GGA (12768C>A) GTA304TTG (12772G>T 12774A>G) TAC305TAT (12777C>T) ATG306ATC (12780G>C) CGT307CGC (12783T>C) GCC310ATT (12790G>A 12791C>T 12792C>T) AAT311GGA (12793A>G 12794A>G 12795T>A) AGG312ACA (12797G>C 12798G>A) GGC315GGT (12807C>T) ACT316AAT (12809C>A) GGT318GGA (12816T>A) CCG319CCA (12819G>A) GGC321GGA (12825C>A) GTA322GCA (12827T>C) CGT324CGC (12834T>C) CAC325CAT (12837C>T) ACT326GTT (12838A>G 12839C>T) CAA327CAG (12843A>G) TCT328GCT (12844T>G) GCT329GTA (12848C>T 12849T>A) ACC330ACG (12852C>G) CGC331CGA (12855C>A) CCT332GCT (12856C>G) TTG333CTA (12859T>C 12861G>A) ACT336ACC (12870T>C) ATA337ATT (12873A>T) CTG339CTT (12879G>T) AAT340AAC (12882T>C) ACG341TCT (12883A>T 12885G>T) CTT342CTC (12888T>C) GGA343GGT (12891A>T) GCC344GGC (12893C>G) GCC345GCA (12897C>A) GAG346GAA (12900G>A) CAT347CCT (12902A>C) CTT348TTA (12904C>T 12906T>A) TTA350CTA (12910T>C) CGT352AGA (12916C>A 12918T>A) AGT354AGC (12924T>C) AGC355AGT (12927C>T) GCT357GCA (12933T>A) GCT359GCC (12939T>C) TCA360TCT (12942A>T) TAT361TTT (12944A>T) CGC363CGA (12951C>A) AAT364CAT (12952A>C) TAT365TAC (12957T>C) GAA507C.G (13381G>C 13383A>G) GTA508A.T (13384G>A 13386A>T) TCC511..A (13395C>A) TTT512AAC (13396T>A 13397T>A 13398T>C) TCG513.CT (13401G>T) CCT515CCG (13407T>G) CTG516TTA (13408C>T 13410G>A) AAT517GAG (13411A>G 13413T>G) CTG518TTG (13414C>T) GGC519GGT (13419C>T) CTA527CTC (13443A>C) TCC528ACC (13444T>A) AGT529AGC (13449T>C) ACC534ACA (13464C>A) GTG545GTT (13497G>T) CTT547CTG (13503T>G) AAC552AAT (13518C>T) GCA570TCA (13570G>T) GTT571GTC (13575T>C) TCC577TCT (13593C>T) ACG579TCG (13597A>T) GGG580GGA (13602G>A) GCG593GCC (13641G>C) GCT622GCC (13728T>C) TTG668CTG (13864T>C) GGG692..A (13938G>A)
529611.3%23085.8%45 (100%)41 (91.1%)0/0/0/00
Protein mutations:
Q54K (16457C>A 16459G>A) G61S (16478G>A) G89C (16562G>T)
Codon mutations:
CAG54AAA (16457C>A 16459G>A) GGT61AGT (16478G>A) GCA74GCT (16519A>T) GGC89TGC (16562G>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43