Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Traversvirus tv86

Assembly

1013 (5 contig(s))
18.2
192
12.39 rpm (after QC)
1
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Traversvirus tv86 (Taxonomy ID: 2844180)
94.6535
90.625
3
81

Alignment

1785.0 (NT) + 1154.0 (AA) = 2939.0
89.9602
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT3539600881.7%178589.3%1010 (99.7%)956 (94.4%)0/3
Mutations:
3561C>T 3563G>A 3591T>C 3688T>C 3691C>T 3718C>G 3737delT 3744G>T 3776T>G 5320G>T 5324G>C 5326T>G 5329T>A 5332C>T 5394T>A 47524T>W 47587A>C 47588C>A 57572G>T 57659A>C 57661G>C 57664T>C 59757A>G 59761T>G 59763G>A 59778A>G 59784C>T 59799T>C 59801A>G 59817G>A 59839G>A 59842A>G 59843G>T 59845C>T 59846A>G 59847G>A 59857T>G 59865G>A 59870G>A 59876T>C 59880G>A 59888C>T 59893G>T 59974_59975delAT 59998G>A 60002C>A 60026C>T 60034G>A 60040A>G 60049T>A 60066C>T 60069T>C 60070A>C 60081G>T 60083T>C 60086G>A
CDS
6056324.4%14493.5%28 (100%)25 (89.3%)0/0/0/01
Protein mutations:
A612V (3561C>T) A613T (3563G>A) V622A (3591T>C)
Codon mutations:
GCA612GTA (3561C>T) GCG613ACG (3563G>A) GTG622GCG (3591T>C)
13548.6%21592.3%35 (100%)33 (94.3%)0/0/0/00
Protein mutations:
Y2D (3776T>G)
Codon mutations:
TAC2GAC (3776T>G)
225418.5%23689.1%33 (100%)30 (90.9%)0/0/0/00
Protein mutations:
D25Q (5324G>C 5326T>G) I48N (5394T>A)
Codon mutations:
GCG23GCT (5320G>T) GAT25CAG (5324G>C 5326T>G) ATT26ATA (5329T>A) CTC27CTT (5332C>T) ATC48AAC (5394T>A)
12415.3%16583.3%24 (100%)22 (91.7%)0/0/1/00
185415.4%21488.4%37 (100%)34 (91.9%)0/0/0/00
Protein mutations:
E50D (57659A>C) R51T (57661G>C) I52T (57664T>C)
Codon mutations:
GTG21GTT (57572G>T) GAA50GAC (57659A>C) AGA51ACA (57661G>C) ATC52ACC (57664T>C)
175168.6%18084.9%35 (100%)30 (85.7%)0/0/0/02
Protein mutations:
S20A (59761T>G 59763G>A) E33G (59801A>G) V46I (59839G>A) S47V (59842A>G 59843G>T) Q48* (59845C>T 59846A>G 59847G>A)
Codon mutations:
GCA18GCG (59757A>G) TCG20GCA (59761T>G 59763G>A) GCA25GCG (59778A>G) GGC27GGT (59784C>T) ACT32ACC (59799T>C) GAA33GGA (59801A>G) ACG38ACA (59817G>A) GTC46ATC (59839G>A) AGT47GTT (59842A>G 59843G>T) CAG48TGA (59845C>T 59846A>G 59847G>A)
Proteins
6056324.4%14493.5%28 (100%)25 (89.3%)0/0/0/01
Protein mutations:
A612V (3561C>T) A613T (3563G>A) V622A (3591T>C)
Codon mutations:
GCA612GTA (3561C>T) GCG613ACG (3563G>A) GTG622GCG (3591T>C)
13548.6%21592.3%35 (100%)33 (94.3%)0/0/0/00
Protein mutations:
Y2D (3776T>G)
Codon mutations:
TAC2GAC (3776T>G)
225418.5%23689.1%33 (100%)30 (90.9%)0/0/0/00
Protein mutations:
D25Q (5324G>C 5326T>G) I48N (5394T>A)
Codon mutations:
GCG23GCT (5320G>T) GAT25CAG (5324G>C 5326T>G) ATT26ATA (5329T>A) CTC27CTT (5332C>T) ATC48AAC (5394T>A)
12415.3%16583.3%24 (100%)22 (91.7%)0/0/1/00
Protein mutations:none
Codon mutations:
AGC6WGC (47524T>W)
185415.4%21488.4%37 (100%)34 (91.9%)0/0/0/00
Protein mutations:
E50D (57659A>C) R51T (57661G>C) I52T (57664T>C)
Codon mutations:
GTG21GTT (57572G>T) GAA50GAC (57659A>C) AGA51ACA (57661G>C) ATC52ACC (57664T>C)
175168.6%18084.9%35 (100%)30 (85.7%)0/0/0/02
Protein mutations:
S20A (59761T>G 59763G>A) E33G (59801A>G) V46I (59839G>A) S47V (59842A>G 59843G>T) Q48* (59845C>T 59846A>G 59847G>A)
Codon mutations:
GCA18GCG (59757A>G) TCG20GCA (59761T>G 59763G>A) GCA25GCG (59778A>G) GGC27GGT (59784C>T) ACT32ACC (59799T>C) GAA33GGA (59801A>G) ACG38ACA (59817G>A) GTC46ATC (59839G>A) AGT47GTT (59842A>G 59843G>T) CAG48TGA (59845C>T 59846A>G 59847G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43