Version 2.22.0
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Shamshuipovirus HK022

Assembly

1025 (3 contig(s))
16.8
173
11.16 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Shamshuipovirus HK022 (Taxonomy ID: 10742)
90.0394
95.098
1
35

Alignment

1559.0 (NT) + 652.0 (AA) = 2211.0
82.9644
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT24345381672.5%155978.7%1011 (98.3%)913 (88.8%)3/14
Mutations:
24362T>A 24364G>T 24389T>A 33087A>G 33112C>T 33125C>A 33137C>A 33169T>C 33170G>A 33173T>A 33211G>T 33235C>T 33265C>T 33267C>T 33268T>C 33274C>A 33278A>G 33300G>A 33302A>T 33304T>G 33309G>T 33314_33322delTATCGATGG 33328T>A 33329C>G 33330A>C 33334A>T 33335A>G 33336G>C 33348A>G 33357G>A 33366A>G 33368_33369insG 33375A>T 33487C>A 33498C>T 33501G>A 33507_33508insC 33510T>C 33511C>A 33512C>A 33513T>A 33514G>A 33516A>C 33517G>C 33523G>A 33526C>G 33527G>C 33528T>C 33529_33532delGAGG 33535T>C 33538T>C 33540T>C 33541A>G 33542C>G 33543C>T 33548T>A 33549C>T 33550G>C 33552G>C 33553delG 33556G>T 33559G>C 33561C>A 33562A>T 33563C>G 33565T>C 33567T>C 33568G>A 33570T>G 33572A>G 33573T>C 33575A>G 33576C>A 33578A>T 33585T>A 33586A>C 33588T>A 33589G>A 33591A>G 33592T>C 33594C>A 33595G>T 33596A>G 33597A>T 33598G>A 33601C>G 33603G>C 33603_33604insT 33606T>C 33612T>C 33619G>A 33638T>C 37828T>C 37843C>T 37900T>G 37908A>T 37960G>C 37996A>C 38017A>G 38058A>C 38080G>A 38085C>T 38151A>G 38160C>T
CDS
12611.0%15990.9%26 (100%)24 (92.3%)0/0/0/00
Protein mutations:
R20S (24362T>A 24364G>T)
Codon mutations:
GGA11GGT (24389T>A) CGA20AGT (24362T>A 24364G>T)
8415947.8%49395.5%76 (100%)73 (96.1%)0/0/0/01
Protein mutations:
D109E (37900T>G) D112V (37908A>T) K141N (37996A>C)
Codon mutations:
GAT85GAC (37828T>C) AGC90AGT (37843C>T) GAT109GAG (37900T>G) GAT112GTT (37908A>T) GGG129GGC (37960G>C) AAA141AAC (37996A>C) GAA148GAG (38017A>G)
Proteins
12611.0%15990.9%26 (100%)24 (92.3%)0/0/0/00
Protein mutations:
R20S (24362T>A 24364G>T)
Codon mutations:
GGA11GGT (24389T>A) CGA20AGT (24362T>A 24364G>T)
8415947.8%49395.5%76 (100%)73 (96.1%)0/0/0/01
Protein mutations:
D109E (37900T>G) D112V (37908A>T) K141N (37996A>C)
Codon mutations:
GAT85GAC (37828T>C) AGC90AGT (37843C>T) GAT109GAG (37900T>G) GAT112GTT (37908A>T) GGG129GGC (37960G>C) AAA141AAC (37996A>C) GAA148GAG (38017A>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43