Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Traversvirus PA28

Assembly

1776 (5 contig(s))
10.1
167
10.78 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Traversvirus PA28 (Taxonomy ID: 1981163)
97.4662
97.5472
4
90

Alignment

3372.0 (NT) + 3588.0 (AA) = 6960.0
96.4791
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT11325437182.9%337294.9%1776 (100%)1731 (97.5%)0/0
Mutations:
11383C>A 11428A>C 11429C>A 11436A>C 11438G>A 11439T>A 20456T>A 20495G>T 20576G>A 20586A>G 20622C>T 20634G>T 20772A>G 20784A>T 20808A>T 20815C>T 20823G>A 20826A>G 20898A>G 20919T>C 20966C>T 21053C>A 21078C>T 21106G>T 25067C>T 25462A>C 25470G>A 25505A>C 43243C>T 43278T>A 43283G>T 43284T>C 43296G>A 43308A>G 43319T>A 43377C>T 43385T>C 43395A>G 43398A>G 43413G>C 43422T>C 43426C>T 43598G>A 43688A>G 43694A>G
CDS
11912.1%13895.8%19 (100%)18 (94.7%)0/0/0/00
177077.1%39299.0%54 (100%)54 (100%)0/0/0/01
120283.8%129198.0%202 (100%)197 (97.5%)0/0/0/00
Protein mutations:
S2N (20576G>A) I5M (20586A>G) A132V (20966C>T) P161Q (21053C>A) A179S (21106G>T)
Codon mutations:
AGT2AAT (20576G>A) ATA5ATG (20586A>G) ATC17ATT (20622C>T) GTG21GTT (20634G>T) GAA67GAG (20772A>G) GGA71GGT (20784A>T) GTA79GTT (20808A>T) CTG82TTG (20815C>T) CCG84CCA (20823G>A) GAA85GAG (20826A>G) CCA109CCG (20898A>G) GCT116GCC (20919T>C) GCC132GTC (20966C>T) CCA161CAA (21053C>A) CGC169CGT (21078C>T) GCC179TCC (21106G>T)
14429751.9%101695.8%154 (100%)151 (98.1%)0/0/0/01
Protein mutations:
F146V (25505A>C) I160S (25462A>C) D292N (25067C>T)
Codon mutations:
TTC146GTC (25505A>C) GCC157GCT (25470G>A) ATC160AGC (25462A>C) GAT292AAT (25067C>T)
516118.0%85100%11 (100%)11 (100%)0/0/0/01
19252.2%33290.2%48 (100%)44 (91.7%)0/0/0/01
Protein mutations:
M1K (43319T>A) I23T (43385T>C) H37Y (43426C>T)
Codon mutations:
ATG1AAG (43319T>A) GCC20GCT (43377C>T) ATT23ACT (43385T>C) ACA26ACG (43395A>G) CCA27CCG (43398A>G) GTG32GTC (43413G>C) CGT35CGC (43422T>C) CAT37TAT (43426C>T)
14214.2%334100%42 (100%)42 (100%)0/0/0/00
Proteins
11912.1%13895.8%19 (100%)18 (94.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
177077.1%39299.0%54 (100%)54 (100%)0/0/0/01
Protein mutations:none
Codon mutations:
GCT29GCA (20456T>A) CTG42CTT (20495G>T) GAG69GAA (20576G>A)
120283.8%129198.0%202 (100%)197 (97.5%)0/0/0/00
Protein mutations:
S2N (20576G>A) I5M (20586A>G) A132V (20966C>T) P161Q (21053C>A) A179S (21106G>T)
Codon mutations:
AGT2AAT (20576G>A) ATA5ATG (20586A>G) ATC17ATT (20622C>T) GTG21GTT (20634G>T) GAA67GAG (20772A>G) GGA71GGT (20784A>T) GTA79GTT (20808A>T) CTG82TTG (20815C>T) CCG84CCA (20823G>A) GAA85GAG (20826A>G) CCA109CCG (20898A>G) GCT116GCC (20919T>C) GCC132GTC (20966C>T) CCA161CAA (21053C>A) CGC169CGT (21078C>T) GCC179TCC (21106G>T)
14429751.9%101695.8%154 (100%)151 (98.1%)0/0/0/01
Protein mutations:
F146V (25505A>C) I160S (25462A>C) D292N (25067C>T)
Codon mutations:
TTC146GTC (25505A>C) GCC157GCT (25470G>A) ATC160AGC (25462A>C) GAT292AAT (25067C>T)
516118.0%85100%11 (100%)11 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19252.2%33290.2%48 (100%)44 (91.7%)0/0/0/01
Protein mutations:
M1K (43319T>A) I23T (43385T>C) H37Y (43426C>T)
Codon mutations:
ATG1AAG (43319T>A) GCC20GCT (43377C>T) ATT23ACT (43385T>C) ACA26ACG (43395A>G) CCA27CCG (43398A>G) GTG32GTC (43413G>C) CGT35CGC (43422T>C) CAT37TAT (43426C>T)
14214.2%334100%42 (100%)42 (100%)0/0/0/00
Protein mutations:none
Codon mutations:
CCG2CCA (43598G>A) CAA32CAG (43688A>G) CGA34CGG (43694A>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43