Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Enterobacteria phage SfV

Assembly

955 (4 contig(s))
16.3
160
10.32 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Enterobacteria phage SfV (Taxonomy ID: 55884)
95.1832
94.7598
2
53

Alignment

1726.0 (NT) + 1548.0 (AA) = 3274.0
92.8005
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT6714358992.6%172690.4%955 (100%)909 (95.2%)0/0
Mutations:
6726T>C 24704A>G 24760G>A 24761A>G 24789A>G 24869A>G 25854A>T 25965T>C 26077A>G 35622A>G 35625A>G 35627T>A 35628T>A 35629T>A 35635G>A 35636G>A 35637C>A 35638A>T 35641A>T 35645T>C 35647C>T 35665G>C 35677A>C 35698C>T 35703G>T 35719C>T 35722C>T 35731T>C 35734T>C 35740T>G 35743T>C 35746C>A 35750C>A 35752G>A 35781A>G 35800C>A 35815A>G 35818C>T 35824A>G 35827T>C 35842A>C 35857T>A 35875C>A 35884T>C 35887T>C 35894G>A
CDS
14416915.4%15688.6%26 (100%)25 (96.2%)0/0/0/01
Protein mutations:
W148R (6726T>C)
Codon mutations:
TGG148CGG (6726T>C)
12513.4%16397.6%25 (100%)24 (96.0%)0/0/0/00
8917136.9%60495.1%83 (100%)80 (96.4%)0/0/0/00
Protein mutations:
I95T (26077A>G) D169E (25854A>T)
Codon mutations:
ATA95ACA (26077A>G) TTA132TTG (25965T>C) GAT169GAA (25854A>T)
1081124.5%1157.9%5 (100%)4 (80.0%)0/0/0/01
Protein mutations:
E111G (35622A>G)
Codon mutations:
GAG111GGG (35622A>G) TAA112TGA (35625A>G)
19056.6%61495.6%90 (100%)84 (93.3%)0/0/0/00
Protein mutations:
A3N (35636G>A 35637C>A 35638A>T) S6P (35645T>C 35647C>T) R25L (35703G>T) L41I (35750C>A 35752G>A) K51R (35781A>G) E89K (35894G>A)
Codon mutations:
CAG2CAA (35635G>A) GCA3AAT (35636G>A 35637C>A 35638A>T) CTA4CTT (35641A>T) TCC6CCT (35645T>C 35647C>T) CTG12CTC (35665G>C) GCA16GCC (35677A>C) AAC23AAT (35698C>T) CGA25CTA (35703G>T) AAC30AAT (35719C>T) CAC31CAT (35722C>T) GAT34GAC (35731T>C) GTT35GTC (35734T>C) GTT37GTG (35740T>G) GGT38GGC (35743T>C) GGC39GGA (35746C>A) CTG41ATA (35750C>A 35752G>A) AAA51AGA (35781A>G) CCC57CCA (35800C>A) ACA62ACG (35815A>G) GCC63GCT (35818C>T) GGA65GGG (35824A>G) CGT66CGC (35827T>C) TCA71TCC (35842A>C) GCT76GCA (35857T>A) GGC82GGA (35875C>A) GAT85GAC (35884T>C) TTT86TTC (35887T>C) GAA89AAA (35894G>A)
Proteins
14416915.4%15688.6%26 (100%)25 (96.2%)0/0/0/01
Protein mutations:
W148R (6726T>C)
Codon mutations:
TGG148CGG (6726T>C)
12513.4%16397.6%25 (100%)24 (96.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
8917136.9%60495.1%83 (100%)80 (96.4%)0/0/0/00
Protein mutations:
I95T (26077A>G) D169E (25854A>T)
Codon mutations:
ATA95ACA (26077A>G) TTA132TTG (25965T>C) GAT169GAA (25854A>T)
1081124.5%1157.9%5 (100%)4 (80.0%)0/0/0/01
Protein mutations:
E111G (35622A>G)
Codon mutations:
GAG111GGG (35622A>G) TAA112TGA (35625A>G)
19056.6%61495.6%90 (100%)84 (93.3%)0/0/0/00
Protein mutations:
A3N (35636G>A 35637C>A 35638A>T) S6P (35645T>C 35647C>T) R25L (35703G>T) L41I (35750C>A 35752G>A) K51R (35781A>G) E89K (35894G>A)
Codon mutations:
CAG2CAA (35635G>A) GCA3AAT (35636G>A 35637C>A 35638A>T) CTA4CTT (35641A>T) TCC6CCT (35645T>C 35647C>T) CTG12CTC (35665G>C) GCA16GCC (35677A>C) AAC23AAT (35698C>T) CGA25CTA (35703G>T) AAC30AAT (35719C>T) CAC31CAT (35722C>T) GAT34GAC (35731T>C) GTT35GTC (35734T>C) GTT37GTG (35740T>G) GGT38GGC (35743T>C) GGC39GGA (35746C>A) CTG41ATA (35750C>A 35752G>A) AAA51AGA (35781A>G) CCC57CCA (35800C>A) ACA62ACG (35815A>G) GCC63GCT (35818C>T) GGA65GGG (35824A>G) CGT66CGC (35827T>C) TCA71TCC (35842A>C) GCT76GCA (35857T>A) GGC82GGA (35875C>A) GAT85GAC (35884T>C) TTT86TTC (35887T>C) GAA89AAA (35894G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43