Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus YPM50

Assembly

1039 (6 contig(s))
15.7
158
10.19 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus YPM50 (Taxonomy ID: 2956280)
93.6477
93.75
3
38

Alignment

1814.0 (NT) + 1554.0 (AA) = 3368.0
91.2737
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT3917302103.3%181487.3%1039 (100%)973 (93.6%)0/0
Mutations:
3926G>A 3927C>T 3929C>T 3930A>G 3931T>A 3933C>T 3936G>A 3939A>T 3941G>C 3942T>A 3962T>C 4052A>G 4054T>C 4059T>C 4064A>T 4065T>C 4068T>C 4069G>C 4072C>T 4073C>T 4075G>A 4096C>G 4116T>C 4181T>A 4258A>G 4268C>T 4313C>A 4325C>T 4337T>G 16405A>G 16406A>T 16407A>C 16409C>T 16414G>A 16438T>A 16441G>A 16480C>T 16700G>A 16704C>G 16731T>A 16734T>C 16738G>A 16739A>C 16741A>T 16747C>A 16751G>T 16753A>G 16756C>T 16759G>C 16762T>C 16769G>A 16770C>T 16771C>T 16772A>G 16773A>G 16774T>A 16776A>C 16777G>A 16788C>A 16795T>A 16804C>A 16806T>C 30046A>G 30074T>C 30207C>T 30210A>C
CDS
28934516.5%390100%57 (100%)57 (100%)0/0/0/01
18791213.4%77890.9%122 (100%)109 (89.3%)0/0/0/01
Protein mutations:
K189S (16406A>T 16407A>C) A287T (16700G>A) A288G (16704C>G) F297Y (16731T>A) I298T (16734T>C) V304L (16751G>T 16753A>G) M306I (16759G>C) A310I (16769G>A 16770C>T 16771C>T) N311G (16772A>G 16773A>G 16774T>A) K312T (16776A>C 16777G>A) T316N (16788C>A) V322A (16806T>C)
Codon mutations:
GAA188GAG (16405A>G) AAA189TCA (16406A>T 16407A>C) CTG190TTG (16409C>T) GCG191GCA (16414G>A) GCT199GCA (16438T>A) GCG200GCA (16441G>A) AAC213AAT (16480C>T) GCT287ACT (16700G>A) GCC288GGC (16704C>G) TTT297TAT (16731T>A) ATC298ACC (16734T>C) ACG299ACA (16738G>A) AGA300CGT (16739A>C 16741A>T) GGC302GGA (16747C>A) GTA304TTG (16751G>T 16753A>G) TAC305TAT (16756C>T) ATG306ATC (16759G>C) CGT307CGC (16762T>C) GCC310ATT (16769G>A 16770C>T 16771C>T) AAT311GGA (16772A>G 16773A>G 16774T>A) AAG312ACA (16776A>C 16777G>A) ACT316AAT (16788C>A) GGT318GGA (16795T>A) GGC321GGA (16804C>A) GTA322GCA (16806T>C)
184.5%5090.9%8 (100%)7 (87.5%)0/0/0/00
1541678.4%8688.7%14 (100%)14 (100%)0/0/0/01
13952.0%25090.6%39 (100%)38 (97.4%)0/0/0/00
Proteins
28934516.5%390100%57 (100%)57 (100%)0/0/0/01
Protein mutations:none
Codon mutations:
GGA289GGC (4337T>G) GAG293GAA (4325C>T) TCG297TCT (4313C>A) GAG312GAA (4268C>T) TTA316CTA (4258A>G) ACA341ACT (4181T>A)
18791213.4%77890.9%122 (100%)109 (89.3%)0/0/0/01
Protein mutations:
K189S (16406A>T 16407A>C) A287T (16700G>A) A288G (16704C>G) F297Y (16731T>A) I298T (16734T>C) V304L (16751G>T 16753A>G) M306I (16759G>C) A310I (16769G>A 16770C>T 16771C>T) N311G (16772A>G 16773A>G 16774T>A) K312T (16776A>C 16777G>A) T316N (16788C>A) V322A (16806T>C)
Codon mutations:
GAA188GAG (16405A>G) AAA189TCA (16406A>T 16407A>C) CTG190TTG (16409C>T) GCG191GCA (16414G>A) GCT199GCA (16438T>A) GCG200GCA (16441G>A) AAC213AAT (16480C>T) GCT287ACT (16700G>A) GCC288GGC (16704C>G) TTT297TAT (16731T>A) ATC298ACC (16734T>C) ACG299ACA (16738G>A) AGA300CGT (16739A>C 16741A>T) GGC302GGA (16747C>A) GTA304TTG (16751G>T 16753A>G) TAC305TAT (16756C>T) ATG306ATC (16759G>C) CGT307CGC (16762T>C) GCC310ATT (16769G>A 16770C>T 16771C>T) AAT311GGA (16772A>G 16773A>G 16774T>A) AAG312ACA (16776A>C 16777G>A) ACT316AAT (16788C>A) GGT318GGA (16795T>A) GGC321GGA (16804C>A) GTA322GCA (16806T>C)
184.5%5090.9%8 (100%)7 (87.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
1541678.4%8688.7%14 (100%)14 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
13952.0%25090.6%39 (100%)38 (97.4%)0/0/0/00
Protein mutations:none
Codon mutations:
CAC41..T (30207C>T) ATA42..C (30210A>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43