Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus pv12474III

Assembly

2056 (12 contig(s))
7.0
140
9.03 rpm (after QC)
1
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus pv12474III (Taxonomy ID: 2844168)
96.6926
96.1765
2
44

Alignment

3842.0 (NT) + 4011.0 (AA) = 7853.0
95.6167
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT11840329036.1%384293.4%2056 (100%)1988 (96.7%)0/0
Mutations:
11840G>T 11942T>G 12061C>T 15961G>A 16040T>C 16121C>T 16186G>C 16201T>G 16212G>T 16213T>G 16215A>T 16217C>A 16218A>C 17523T>C 17541T>C 17589G>A 17622G>A 17649G>A 17738C>G 17751G>A 17754G>A 17786T>C 17802G>A 17807C>T 17808A>G 17832G>T 18126G>A 18240A>G 18243C>T 18267G>A 18586A>T 18612G>A 18681T>C 18690C>A 18711G>T 18714A>G 18747T>C 21452C>T 21456G>T 21494C>T 21498A>G 23797T>C 23799T>K 23806A>G 23808C>G 23872A>G 25036T>G 25042T>C 25050C>A 25051T>C 25057T>C 25063G>C 25066A>C 25070G>A 25078C>T 25090G>T 25110G>T 25111A>T 25118C>T 25120C>T 25126G>C 25138T>A 25141G>A 25159C>A 32871C>A 32873T>C 32877G>A 32897T>C
CDS
16868.0%42299.1%68 (100%)68 (100%)0/0/0/00
677512.0%48100%9 (100%)9 (100%)0/0/0/01
9918923.5%54292.0%91 (100%)86 (94.5%)0/0/0/00
Protein mutations:
V100G (16217C>A 16218A>C) V101D (16215A>T) T102H (16212G>T 16213T>G) R111G (16186G>C)
Codon mutations:
GTG100GGT (16217C>A 16218A>C) GTC101GAC (16215A>T) ACC102CAC (16212G>T 16213T>G) AGG106CGG (16201T>G) CGC111GGC (16186G>C) GAG132GAA (16121C>T) TCA159TCG (16040T>C) CTG186TTG (15961G>A)
23365334.4%169197.0%281 (100%)274 (97.5%)0/0/0/00
Protein mutations:
M291K (18586A>T) V551I (17807C>T) I558V (17786T>C) G574R (17738C>G)
Codon mutations:
GCA237GCG (18747T>C) AAT248AAC (18714A>G) ACC249ACA (18711G>T) GCG256GCT (18690C>A) GCA259GCG (18681T>C) AAC282AAT (18612G>A) ATG291AAG (18586A>T) GGC397GGT (18267G>A) GGG405GGA (18243C>T) AAT406AAC (18240A>G) AGC444AGT (18126G>A) GTC542GTA (17832G>T) GGT550GGC (17808A>G) GTC551ATC (17807C>T) ATC552ATT (17802G>A) ATA558GTA (17786T>C) GCC568GCT (17754G>A) ATC569ATT (17751G>A) GGC574CGC (17738C>G) GCC603GCT (17649G>A) ATC612ATT (17622G>A) TTC623TTT (17589G>A) GAA639GAG (17541T>C) AAA645AAG (17523T>C)
16873.9%40299.0%68 (100%)67 (98.5%)0/0/0/00
52797.1%13484.3%28 (100%)25 (89.3%)0/0/0/00
Protein mutations:
V53A (21498A>G) A67E (21456G>T)
Codon mutations:
GTG53GCG (21498A>G) CAG54CAA (21494C>T) GCG67GAG (21456G>T) GCG68GCA (21452C>T)
1137.4%7684.4%13 (100%)11 (84.6%)0/0/0/00
Protein mutations:
G10R (23806A>G 23808C>G)
Codon mutations:
GGT10CGC (23806A>G 23808C>G) AAA13M.G (23797T>C 23799T>K)
2016439.3%33490.5%60 (100%)55 (91.7%)0/0/0/01
Protein mutations:
R217Q (25118C>T) L220I (25110G>T) T233M (25070G>A) A240S (25050C>A)
Codon mutations:
CTG203CTT (25159C>A) ACC209ACT (25141G>A) GCA210GCT (25138T>A) ACC214ACG (25126G>C) GCG216GCA (25120C>T) CGA217CAA (25118C>T) GGT219GGA (25111A>T) CTT220ATT (25110G>T) GCC226GCA (25090G>T) ACG230ACA (25078C>T) ACG233ATG (25070G>A) CTT234CTG (25066A>C) GCC235GCG (25063G>C) ACA237ACG (25057T>C) AAA239AAG (25051T>C) GCG240TCG (25050C>A) AAA242AAG (25042T>C) GCA244GCC (25036T>G) ATT632ATC (23872A>G)
325415.5%13197.0%23 (100%)22 (95.7%)0/0/0/00
14818615.7%23196.7%39 (100%)37 (94.9%)0/0/0/00
Protein mutations:
T150A (32897T>C) T158A (32871C>A 32873T>C)
Codon mutations:
ACG150GCG (32897T>C) ACC156ACT (32877G>A) ACG158GCT (32871C>A 32873T>C)
Proteins
16868.0%42299.1%68 (100%)68 (100%)0/0/0/00
Protein mutations:none
Codon mutations:
ATA38ATC (11942T>G) TCC72..A (11840G>T)
677512.0%48100%9 (100%)9 (100%)0/0/0/01
Protein mutations:none
Codon mutations:
GTG73GTA (12061C>T)
9918923.5%54292.0%91 (100%)86 (94.5%)0/0/0/00
Protein mutations:
V100G (16217C>A 16218A>C) V101D (16215A>T) T102H (16212G>T 16213T>G) R111G (16186G>C)
Codon mutations:
GTG100GGT (16217C>A 16218A>C) GTC101GAC (16215A>T) ACC102CAC (16212G>T 16213T>G) AGG106CGG (16201T>G) CGC111GGC (16186G>C) GAG132GAA (16121C>T) TCA159TCG (16040T>C) CTG186TTG (15961G>A)
23365334.4%169197.0%281 (100%)274 (97.5%)0/0/0/00
Protein mutations:
M291K (18586A>T) V551I (17807C>T) I558V (17786T>C) G574R (17738C>G)
Codon mutations:
GCA237GCG (18747T>C) AAT248AAC (18714A>G) ACC249ACA (18711G>T) GCG256GCT (18690C>A) GCA259GCG (18681T>C) AAC282AAT (18612G>A) ATG291AAG (18586A>T) GGC397GGT (18267G>A) GGG405GGA (18243C>T) AAT406AAC (18240A>G) AGC444AGT (18126G>A) GTC542GTA (17832G>T) GGT550GGC (17808A>G) GTC551ATC (17807C>T) ATC552ATT (17802G>A) ATA558GTA (17786T>C) GCC568GCT (17754G>A) ATC569ATT (17751G>A) GGC574CGC (17738C>G) GCC603GCT (17649G>A) ATC612ATT (17622G>A) TTC623TTT (17589G>A) GAA639GAG (17541T>C) AAA645AAG (17523T>C)
16873.9%40299.0%68 (100%)67 (98.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
52797.1%13484.3%28 (100%)25 (89.3%)0/0/0/00
Protein mutations:
V53A (21498A>G) A67E (21456G>T)
Codon mutations:
GTG53GCG (21498A>G) CAG54CAA (21494C>T) GCG67GAG (21456G>T) GCG68GCA (21452C>T)
1137.4%7684.4%13 (100%)11 (84.6%)0/0/0/00
Protein mutations:
G10R (23806A>G 23808C>G)
Codon mutations:
GGT10CGC (23806A>G 23808C>G) AAA13M.G (23797T>C 23799T>K)
2016439.3%33490.5%60 (100%)55 (91.7%)0/0/0/01
Protein mutations:
R217Q (25118C>T) L220I (25110G>T) T233M (25070G>A) A240S (25050C>A)
Codon mutations:
CTG203CTT (25159C>A) ACC209ACT (25141G>A) GCA210GCT (25138T>A) ACC214ACG (25126G>C) GCG216GCA (25120C>T) CGA217CAA (25118C>T) GGT219GGA (25111A>T) CTT220ATT (25110G>T) GCC226GCA (25090G>T) ACG230ACA (25078C>T) ACG233ATG (25070G>A) CTT234CTG (25066A>C) GCC235GCG (25063G>C) ACA237ACG (25057T>C) AAA239AAG (25051T>C) GCG240TCG (25050C>A) AAA242AAG (25042T>C) GCA244GCC (25036T>G) ATT632ATC (23872A>G)
325415.5%13197.0%23 (100%)22 (95.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
14818615.7%23196.7%39 (100%)37 (94.9%)0/0/0/00
Protein mutations:
T150A (32897T>C) T158A (32871C>A 32873T>C)
Codon mutations:
ACG150GCG (32897T>C) ACC156ACT (32877G>A) ACG158GCT (32871C>A 32873T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43