Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Wongtaivirus HK542

Assembly

1047 (3 contig(s))
11.4
118
7.61 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Wongtaivirus HK542 (Taxonomy ID: 2169922)
97.7077
97.2881
3
57

Alignment

1998.0 (NT) + 2002.0 (AA) = 4000.0
96.5484
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT22790245942.7%199895.4%1047 (100%)1023 (97.7%)0/0
Mutations:
22988G>A 22994T>C 22996G>A 23057A>T 23206C>T 23215A>T 23236G>A 23257T>C 23363G>C 23423C>T 23424C>T 23427T>C 23472A>G 23484T>C 23487G>C 24227A>T 24233C>T 24245A>G 24260A>C 24269T>C 24325A>G 24367A>G 24490A>G 24519G>A
CDS
17373.7%527100%73 (100%)73 (100%)0/0/0/00
112871.1%60696.0%91 (100%)88 (96.7%)0/0/0/01
Protein mutations:
A18G (23363G>C) V120E (23057A>T)
Codon mutations:
GCC18GGC (23363G>C) CCA53CCG (23257T>C) TAC60TAT (23236G>A) GGT67GGA (23215A>T) GTG70GTA (23206C>T) GTA120GAA (23057A>T)
17020216.3%21698.6%33 (100%)32 (97.0%)0/0/0/01
Protein mutations:
A200T (23423C>T)
Codon mutations:
GGC178GGG (23487G>C) ACA179ACG (23484T>C) CAT183CAC (23472A>G) GGA198GGG (23427T>C) GCG199GCA (23424C>T) GCT200ACT (23423C>T)
14171.9%26987.9%41 (100%)37 (90.2%)0/0/0/00
Protein mutations:
C7W (24260A>C) M16I (24233C>T) D18E (24227A>T)
Codon mutations:
ACA4ACG (24269T>C) TGT7TGG (24260A>C) TTT12TTC (24245A>G) ATG16ATA (24233C>T) GAT18GAA (24227A>T)
157100%384100%57 (100%)57 (100%)0/0/0/01
Proteins
17373.7%527100%73 (100%)73 (100%)0/0/0/00
Protein mutations:none
Codon mutations:
CTA5TTG (22994T>C 22996G>A) GGC7GGT (22988G>A)
112871.1%60696.0%91 (100%)88 (96.7%)0/0/0/01
Protein mutations:
A18G (23363G>C) V120E (23057A>T)
Codon mutations:
GCC18GGC (23363G>C) CCA53CCG (23257T>C) TAC60TAT (23236G>A) GGT67GGA (23215A>T) GTG70GTA (23206C>T) GTA120GAA (23057A>T)
17020216.3%21698.6%33 (100%)32 (97.0%)0/0/0/01
Protein mutations:
A200T (23423C>T)
Codon mutations:
GGC178GGG (23487G>C) ACA179ACG (23484T>C) CAT183CAC (23472A>G) GGA198GGG (23427T>C) GCG199GCA (23424C>T) GCT200ACT (23423C>T)
14171.9%26987.9%41 (100%)37 (90.2%)0/0/0/00
Protein mutations:
C7W (24260A>C) M16I (24233C>T) D18E (24227A>T)
Codon mutations:
ACA4ACG (24269T>C) TGT7TGG (24260A>C) TTT12TTC (24245A>G) ATG16ATA (24233C>T) GAT18GAA (24227A>T)
157100%384100%57 (100%)57 (100%)0/0/0/01
Protein mutations:none
Codon mutations:
AAT27AAC (24367A>G) AGT41AGC (24325A>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43