Genome Detective

NGS Details (SRR3458562_Metagenome_example): Gibbon ape leukemia virus

Assembly

Coverage Length

4746 (4 contig(s))

Depth Of Coverage

17.6

Number Of Reads

809

Reads Per Million

52.20 rpm (after QC)

Ambiguities

Assembly Method

de novo + reference guided assembly

Consensus Caller

Bcf Tools

Coverage Map

Map

Variant Tables

Consensus Variants

Download consensus variants (vcf)

Minority Variants

Download minority variants (vcf)

SNP Variants Table

Download SNP mutations table (csv)

Annotated Variants Table

Download annotated variants table (csv)

Assignment

Type

Gibbon ape leukemia virus (Taxonomy ID: 11840)

Reference Genome

NC_001885.3

NT Identity (%)

52.7166

AA Identity (%)

45.7733

Number Of Stop Codons

Number Of CDS

Alignment

Alignment Score

35.0 (NT) + 4930.0 (AA) = 4965.0

Concordance (%)

25.0998

Alignment Method

Global, seeded, nucleotide + amino acids (AGA)

NT Alignment

Download alignment (FASTA)

Region Bam File

Download BAM zip file

CDS Alignment

Download CDS alignment (FASTA)

Consensus Sequence

Download consensus sequence (FASTA) (Including IUPAC ambiguity codes)

Consensus Contigs

Download consensus contigs (FASTA)

Genome Region

Sequence starts at position 623 and ends at position 7656 relative to NC_001885.3 reference sequence.

NC_001885.3

SRR3458562_Metagenome_example-NC_001885.3-3-0

NC_001885.3

SRR3458562_Metagenome_example-NC_001885.3-3-0

NC_001885.3

SRR3458562_Metagenome_example-NC_001885.3-3-0

GCGCCAGTCCTTAGAGAGACTGAGCCGCCCGGGTACCCGTGTGTCCAATAAAACCTCTTGCTGATTGCATCCGGAGCCGTGGTCTCGTTGTTCCTTGGGAGGGTTTCTCCTAACTATTGACCGCCCACTTCGGGGGTCTCACATTTGGGGGCTCGTCCGGGATCGGAAACCCCACCCAGGGACCACCGACCCACCAACGGGAGGTAAGCTGGCCAGCGACCGTTGTGTGTCTCGCTTCTGTGTCTAAGTCCGTAATTCTGACTGTCCTTGTGTGTCTCGCTTCTGTGTCTGAGACCGTAACTCTGACTGCCCTTGTAAGTGCGCGCATTTTTTTGGTTTCAGTCTGTTCCGGGTGAATCACTCTGCGAGTGACGTGTGAGTAGCGAACAGACGTGTTCGGGGCTCACCGCCTGGTAATCCAGGGAGACGTCCCAGGATCAGGGGAGGACCAGGGACGCCTGGTGGACCCCTCGGTAACGGGTCGTTGTGACCCGATTTCATCGCCCGTCTGGTAAGACGCGCTCTGAATCTGATTCTCTCTCTCGGTCGCCTCGCCGCCGTCTCTGGTTTCTTTTTGTTTCGTTTCTGGAAAGCCTCTGTGTCACAGTCTTTCTCTCCCAAATCATCAATATGGGACAAGATAATTCTACCCCTATCTCCCTCACTCTAAATCACTGGAGAGATGTGAGAACAAGGGCTCACAATCTATCCGTGGAAATCAAAAAGGGAAAATGGCAGACTTTCTGTTCCTCCGAGTGGCCCACATTCGGCGTGGGGTGGCCACCGGAGGGAACTTTTAATCTCTCTGTCATTTTTGCAGTTAAAAAGATTGTCTTTCAGGAGAACGGGGGACATCCGGACCAAGTTCCATATATCGTGGTATGGCAGGACCTCGCCCAGAATCCCCCACCATGGGTGCCAGCCTCCGCCAAGGTCGCTGTTGTCTCTGATACCCGAAGACCAGTTGCGGGGAGGCCATCAGCTCCTCCCCGACCCCCCA

TCTACCCGGCAACAGACGACTTACTCCTCCTCTCTGAACCCACG------CCCCCGCCCTATCCGGCGGCACTGCCACCCCCTCTGGCCCCTCAG---GCGATCGGACCGCCGTCAGGCCAGATGCCCGATAGTAGCGATCCTGAGGGGCCAGCCGCTGGGACCAGGAGTCGCCGTGCCCGCAGTCCAGCAGACAACTCGGGTCCTGACTCCACTGTGATTTTGCCCCTCCGAGCCATAGGACCCCCGGCCGAGCCCAATGGC---CTGGTCCCTCTACAATATTGGCCTTTTTCCTCAGCAGATCTTTATAATTGGAAATCTAATCATCCCTCTTTTTCTGAAAACCCAGCAGGTCTCACGGGGCTCCTTGAGTCTCTTATGTTCTCCCATCAGCCCACTTGGGACGATTGCCAACAGCTCCTACAGATTCTTTTCACCACTGAGGAACGGGAAAGAATTCTCCTGGAGGCCCGCAAAAATGTCCTTGGGGACAATGGGGCCCCTACACAGCTCGAGAACCTCATTAATGAGGCCTTCCCCCTCAATCGACCTCACTGGGATTACAACACAGCCGCAGGTAGGGAGCGTCTTCTGGTCTACCGCCGGACTCTAGTGGCAGGTCTCAAAGGGGCAGCTCGGCGTCCTACCAATTTGGCTAAGGTAAGAGAGGTCTTGCAGGGACCGGCAGAACCCCCTTCGGTTTTCTTAGAACGCCTGATGGAGGCCTATAGGAGATACACTCCGTTTGATCCCTCTTCTGAGGGACAACAGGCTGCGGTCGCCATGGCCTTTATCGGACAGTCAGCCCCAGATATCAAGAAAAAGTTACAGAGGCTAGAGGGGCTCCAGGACTATTCCTTACAAGATTTAGTAAAAGAGGCAGAAAAGGTGTACCATAAGAGAGAGACAGAAGAAGAAAGACAAGAAAGAGAAAAAAAGGAGGCAGAAGAAAAGGAGAGGCGGCGCGATAGGCCGAAGAAAAAAAACTTGACTAAAAT

TCTGGCCGCAGTAGTAAGTAGAGAAGGGTCCACAGGTAGGCAGACAGGGAACCTGAGCAACCAGGCAAAGAAGACACCTAGGGATGGAAGACCTCCACTAGACAAAGACCAGTGCGCATACTGTAAAGAGAAGGGCCATTGGGCAAGAGAATGTCCCCGAAAAAAACACGTCAGAGAAGCCAAGGTTCTAGCCCTAGATAACTAGGGGAGTCAGGGTTCGGACCCCCTCCCCGAACCTAGGGTAACACTGACTGTGGAGGGGACCCCCATTGAGTTCCTGGTCGACACCGGAGCTGAACATTCAGTATTGACCCAACCCATGGGAAAAGTAGGGTCCAGACGGACGGTCGTGGAAGGAGCGACAGGCAGCAAGGTCTACCCCTGGACCACAAAAAGACTTTTAAAAATTGGACATAAACAAGTGACCCACTCCTTCCTGGTCATACCCGAGTGCCCTGCTCCTCTGTTGGGCAGGGACCTCCTAACCAAACTAAAGGCCCAGATCCAGTTTTCCGCTGAGGGCCCACAGGTAACATGGGGAGAACGCCCTACTATGTGCCTGGTCCTAAACCTGGAAGAAGAATACCGACTACATGAAAAGCCAGTACCCTCCTCTATCGACCCATCCTGGCTCCAGCTTTTCCCCACTGTATGGGCAGAAAGAGCCGGCATGGGACTAGCCAATCAAGTCCCACCAGTGGTAGTAGAGCTAAGATCAGGTGCCTCACCAGTGGCTGTTCGACAATATCCAATGAGCAAAGAAGCTCGGGAAGGTATCAGACCCCACATCCAGAAGTTCCTAGACCTAGGGGTCTTGGTGCCCTGTCGGTCGCCCTGGAATACCCCTCTGCTACCTGTAAAAAAGCCAGGGACCAATGACTATCGGCCAGTTCAAGACCTGAGAGAAATTAATAAAAGGGTACAGGATATTCATCCCACAGTCCCAAACCCTTACAATCTTCTGAGTTCCCTTCCGCCTAGCTATACTTGGTACTCAGTC

TTAGATCTCAAGGATGCCTTTTTCTGCCTCAGGCTACATCCCAACAGCCAGCCGCTGTTCGCGTTCGAGTGGAAAGACCCAGAAAAAGGTAACACAGGTCAGCTGACCTGGACGCGGCTACCACAAGGGTTCAAGAACTCTCCCACTCTCTTCGACGAGGCCCTCCACCGAGATTTGGCTCCCTTTAGGGCCCTCAACCCCCAGGTGGTGTTACTCCAATATGTGGACGACCTCTTGGTGGCCGCCCCCACATATGAAGACTGCAAAAAAGGAACACAGAAGCTCTTACAGGAGTTAAGTAAGTTGGGGTACCGGGTATCGGCTAAGAAGGCCCAGCTCTGCCAGAGAGAAGTCACCTATCTGGGGTACCTACTCAAGGAAGGAAAAAGATGGCTAACCCCAGCCCGAAAGGCTACTGTTATGAAAATCCCTGTTCCTACGACCCCCAGACAGGTCCGTGAATTTCTAGGCACTGCCGGATTCTGCAGGCTCTGGATCCCTGGGTTTGCTTCCCTGGCTGCACCCTTGTACCCCCTAACAAAAGAGAGCATCCCTTTTATTTGGACTGAGGAACATCAGCAGGCTTTTGACCACATAAAAAAAGCCTTGCTGTCAGCCCCTGCATTGGCCCTCCCAGACCTCACCAAGCCATTCACTCTATATATAGATGAGAGAGCCGGCGTGGCCCGGGGAGTGCTCACTCAGACTTTAGGACCCTGGCGGCGGCCAGTAGCATATCTATCAAAAAAACTGGATCCGGTGGCCAGCGGGTGGCCAACCTGCCTGAAAGCGGTTGCAGCAGTAGCACTCCTTCTCAAAGACGCTGATAAGTTAACCTTGGGACAAAATGTGACTGTGATTGCTTCCCATAGCCTCGAAAGCATCGTGCGGCAACCCCCCGACCGGTGGATGACCAATGCCAGAATGACTCATTACCAGAGCCTGCTGTTAAATGAAAGGGTATCGTTTGCGCCCCCTGCTGTCCTAAACCCAGCTACCC

TACTTCCAGTCGAGTCGGAAGCCACCCCAGTG---CACAGGTGCTCAGAAATCCTCGCCGAAGAAACTGGAACTCGACGAGACCTAGAAGACCAACCATTGCCCGGG---GTGCCAACCTGGTATACAGACGGTAGCAGTTTCATCACGGAAGGTAAACGGAGAGCAGGGGCCCCGATCGTAGATGGCAAGCGGACGGTATGGGCTAGCAGCCTGCCAGAAGGTACGTCAGCCCAGAAGGCTGAACTAGTAGCCTTGACGCAGGCATTACGCCTGGCCGAAGGAAAAAACATCAACATCTACACGGACAGCAGGTATGCTTTTGCCACTGCTCATATTCATGGGGCAATATATAAGCAGAGGGGGCTGCTCACTTCTGCTGGAAAAGATATCAAAAACAAAGAGGAAATTTTGGCCCTGCTAGAGGCCATCCATCTCCCTAGGCGGGTCGCCATTATCCACTGTCCTGGCCACCAGAGGGGAAGTAACCCTGTGGCCACTGGGAACCGGAGGGCCGACGAGGCTGCAAAGCAAGCCGCCCTGTCGACCAGAGTGCTGGCAGGAACTACAAAACCTCAAGAGCCAATCGAGCCCGCTCAAGAAAAGACCAGGCCGAGGGAGCTCACCCCTGACCGGGGAAAAGAATTCATTAAGCGGTTACATCAGTTAACTCAC---------------------------TTAGGACCAGAAAAGCTTCTCCAACTAGTGAACCGTACCAGCCTCCTCATCCCGAACCTCCAATCTGCAGTTCGCGAAGTCACCAGTCAGTGTCAGGCTTGTGCCATGACTAATGCGGTCACCACCTACAGAGAGACCGGAAAAAGGCAACGAGGAGATCGACCCGGCGTGTACTGGGAGGTAGACTTCACAGAAATAAAGCCTGGTCGGTATGGAAACAAGTATCTGTTAGTATTCATAGATACTTTCTCCGGATGGGTAGAAGCTTTTCCTACCAAAACTGAAACGGCCCTAATCGT

CTGTAAAAAAATATTAGAAGAAATTCTACCCCGCTTCGGGATCCCTAAGGTACTCGGGTCAGACAATGGCCCG---GCCTTTGTTGCTCAG---GTAAGTCAGGGACTGGCCACTCAACTGGGGATAAATTGGAAGTTACATTGTGCGTATAGACCCCAGAGCTCAGGTCAGGTA---GAAAGAATGAACAGAACAATT------------AAAGAGACCTTGACCAAATTAGCCTTAGAGACCGGTGGAAAAGACTGGGTGACCCTCCTTCCCTTAGCGCTGCTTAGGGCCAGGAATACCCCTGGCCGGTTTGGTTTAACTCCTTATGAAATTCTCTATGGAGGACCACCCCCCATACTT---------------GAGTCTGGAGAAACTTTGGGTCCCGATGATAGATTTCTCCCTGTCTTATTTACTCACTTAAAGGCTTTAGAAATTGTAAGGACCCAAATCTGGGACCAGATCAAAGAGGTGTATAAGCCTGGTACCGTAACAATCCCTCACCCGTTCCAGGTCGGGGATCAAGTGCTTGTCAGACGCCATCGACCCAGCAGC---------------CTTGAGCCTCGGTGGAAAGGCCCATACCTGGTGTTGCTGACTACCCCGACCGCGGTAAAAGTCGATGGTATTGCTGCCTGGGTCCATGCTTCTCACCTCAAACCTGCACCACCTTCGGCACCAGATGAGT------------CCTGGGAGCTGGAAAAGACTGATCATCCTCTTAAGCTGCGTATTCGGCGGCGGCGGGACGAGTCTGCAAAATAAGAACCCCCACCAGCCCATGACCCTCACTTGG---CAGGTACTGTCCCAAACTGGAGACGTTGTCTGGGATACAAAGGCAGTCCAGCCCCCTTGGACTTGGTGGCCCACACTTAAACCTGATGTATGTGCCTTGGCGGCTAGTCTTGAGTCCTGGGATATCCCGGGAACCGATGTCTCGTCCTCTAAACGAGTCAGACCTCC

GGACTCAGACTATACTGCCGCTTAT---------AAGCAAATCACCTGGGGAGCCATAGGGTGCAGCTACCCTCGGGCTAGGACTAGAATGGCAAGCTCTACCTTCTACGTATGTCCCCGGGATGGCCGGACCCTTTCAGAAGCTAGAAGGTGCGGGGGGCTAGAATCCCTATACTGTAAAGAATGGGATTGTGAGACCACGGGGACCGGTTATTGGCTATCTAAATCCTCA---AAAGACCTCATAACTGTAAAATGGGACCAAAATAGCGAATGGACTCAAAAATTTCAACAGTGTCAC------CAGACCGGCTGGTGTAACCCCCTTAAAATAGATTTCACAGACAAAGGAAAATTATCCAAGGACTGGATAACGGGAAAAACCTGGGGATTAAGATTCTATGTGTCTGGACATCCAGGCGTACAGTTCACCATTCGCTTAAAAATCACCAACATGCCAGCTGTGGCAGTAGGTCCTGACCTCGTCCTTGTGGAACAAGGACCT---------------CCTAGAACGTCCCTCGCTCTCCCACCTCCTCTTCCCCCAAGGGAAGCGCCACCGCCATCTCTCCCCGACTCTAACTCCACAGCCCTGGCGACTAGTGCA---CAAACTCCCACGGTGAGAAAAACAATTGTT---ACCCTAAACACTCCGCCTCCCACC---------ACAGGCGACAGACTTTTTGATCTTGTGCAGGGGGCCTTCCTAACCTTAAATGCTACCAACCCAGGGGCCACTGAGTCTTGCTGGCTTTGTTTGGCCATGGGCCCCCCTTATTATGAAGCAATAGCCTCATCAGGAGAGGTCGCCTACTCCACCGACCTT---GACCGGTGCCGCTGGGGGACCCAAGGAAAGCTCACCCTCACTGAGGTCTCAGGACACGGGTTGTGCATAGGAAAGGTGCCCTTTACCCATCAGCATCTCTGCAATCAGACCCTATCCATCAATTCCTCCGGAGACCATCAGTATCTG

CTCCCCTCCAACCATAGCTGGTGGGCTTGCAGCACTGGCCTCACCCCTTGCCTCTCCACCTCAGTTTTTAATCAGACTAGAGATTTCTGTATCCAGGTCCAGCTGATTCCTCGCATCTATTACTATCCTGAAGAAGTTTTGTTACAGGCCTATGACAATTCTCACCCCAGGACTAAAAGAGAGGCTGTCTCACTTACCCTAGCTGTTTTACTGGGGTTGGGAATCACGGCGGGAATAGGTACTGGTTCAACTGCCTTAATTAAAGGACCTATAGACCTCCAGCAAGGCCTGACAAGCCTCCAGATCGCCATAGATGCTGACCTCCGGGCCCTCCAAGACTCAGTCAGCAAGTTAGAGGACTCACTGACTTCCCTGTCCGAGGTAGTGCTCCAAAATAGGAGAGGCCTTGACTTGCTGTTTCTAAAAGAAGGTGGCCTCTGTGCGGCCCTAAAGGAAGAGTGCTGTTTTTACATAGACCACTCAGGTGCAGTACGGGACTCCATGAAAAAACTCAAAGAAAAACTGGATAAAAGACAGTTAGAGCGCCAGAAAAGCCAAAACTGGTATGAAGGATGGTTCAATAACTCCCCTTGGTTCACTACCCTGCTATCAACCATCGCTGGGCCCCTATTACTCCTCCTTCTGTTGCTCATCCTCGGGCCATGCATCATCAATAAGTTAGTTCAATTCATCAATGATAGGATAAGTGCATGTTAAAATTCTGGTCCTTAGACAAAA-TATCAGGCCCTAGAGAACGAAGGT-AACCTTTAATTTTGC---------TCTAAGATTAGAGCTATTCACAAGAGAA-ATG-GGGGAATGAAAGAAGTGTTTTTTTTTAGCCAACTGCAGTAACGCCATTTTGCTAGGCACACCTAAAGGATAGGAAAAATACAGCTAAGAACAGGGCCAAACAGGATATCTGTGGTCATGCACCTGGGCCCCGGCCCAGGCCAAGGACAGAGGGTTCCCAGAAATAGATGAGTCAACAGC

AGTTTCCAGCAAGGACAGAGGGTTCCCAGAAATAGATGAGTCAACAGCAGTTTCCAGGGTGCCCCTCAACCGTTTCAAGGACTCCCATGACCGGGAATTCACCCCTGGCCTTATTTGAACTAACCAATTACCTTGCCTCTCGCTTCTGTACCCGCGCTTTTTGCTATAAAATAAGCTCAGAAACTCCACCCGGAGCGCCAGTCCTTAGAGAGACTGAGCCGCCCGGGTACCCGTGTGTCCAATAAAACCTCTTGCTGATTGCA

..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTAATATGGGACAGACAGTGACTACCCCCCTTAGTTTGACTCTCGACCATTGGACTGAAGTTAGATCCAGGGCTCATAATTTGTCAGTTCAGGTTAAGAAGGGACCTTGGCAGACTTTCTGTGCCTCTGAATGGCCAACATTCGATGTTGGATGGCCATCAGAAGGGACCTT.....................................................GTCATCCTGATCAGGAGCCCTATATCCTTACGTGGCAAGATTTGGCAGAAGATCCTCCGCCATGGGTTAAACCATGGCTAAATAAACCAAGAAAGCCAGGTCCCCGAATCCTGGCTCTTGGAGAGAAAAACAAACACTCGGCCGAAAAAG

TCGAGCCCTCTCCTCGTATCTACCCCGAGATCGAGGAGCCGCCGACTTGGCCGGAACCCCAACCTGTTCCC---CCACCCCCTTATCCAGCACAGGGTGCTGTGAGGGGACCCTCTGCCCCT---CCTGGAGCTCCGGTGGTGGAGGGACCTGCTGCCGGGACTCGGAGCCGGAGAGGCGCCACCCCGGAG---------CGGACAGACGAGATCGCGATATTACCGCTGCGCACCTATGGCCCTCCC---ATGCCAGGGGGCCAATTGCAGCCCCTCCAGTATTGGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

...............................................................................................................................................................................................................................................................................................................................................................................................AAAAAGATGGCTGACGGAGGCACGGAAGAAAACTGTAGTCCAGATACCGGCCCCAACCACAGCCAAACAAGTGAGAGAGTTTTTGGGGACAGCTGGATTTTGCAGACTGTGGATCCCGGGGTTTGCGACCTTAGCAGCCCCACTCTACCCGCTAACCAAAGAAAAAGGGGGATTCTCCTGGGCTCCTGAGCACCAGAAGGCATTTGATGCTATCAAAAAGGCCCTGCTGAGCGCACCTGCTCTGGCCCTCCCTGACGTAACTAAACCCTTTACCCTTTATGTGGATGAGCGTAAGGGAGTAGCCCGAGGAGTTTTAACCCAAACCCTAGGACCATGGAGGAGACCTGTTGCCTACCTGTCAAAGAAGCTTGATCCTGTAGCCAGTGGTTGGCCCGTATGTCTGAAGGCTATCGCAGCTGTGGCCATACTGGTCAAGGACGCTGACAAATTGACTTTGGGACAGAATATAACTGTAATAGCCCCCCATGCATTGGAGAACATCGTTCGGCAGCCCCCAGACCGATGGATGACCAACGCCCGCATGACCCACTATCAAAGCCTGCTTCTCACAGAGAGGGTCACTTTCGCTCCACCAGCCGCTCTCAACCCTGCCACTC

TTCTGCCTGAAGAGACTGATGAA---CCAGTGACTCATGATTGCCATCAACTATTGATTGAGGAGACTGGGGTCCGCAAGGACCTTACAGACATACCGCTGACTGGAGAAGTGCTAACCTGGTTCACTGACGGAAGCAGCTATGTGGTGGAAGGTAAGAGGATGGCTGGGGCGGCAGTGGTGGACGGGACCCGCACGATCTGGGCCAGCAGCCTGCCGGAAGGAACTTCAGCGCAAAAGGCTGAGCTCATGGCCCTCACGCAAGCTTTGCGGCTGGCCGAAGGGAAATCCATAAACATTTATACGGACAGCAGGTATGCCTTTGCGACTGCACACGTACACGGGGCCATCTATAAACAAAGGGGGTTGCTTACCTCAGCAGGGAGGGAAATAAAGAACAAAGAGGAAATTCTAAGCCTATTAGAAGCCTTACATTTGCCAAAAAGGCTAGCTATTATACACTGTCCTGGACATCAGAAAGCCAAAGATCTCATATCTAGAGGGAACCAGATGGCTGACCGGGTTGCCAAGCAGGCAGCCCAGGCTGTTAACCTTCTGCCTATAATAGAAACGCCCAAAGCCCCA---GAACCC---------------AGA---CGACAGTACACCCTAGAAGACTGGCAAGAG---ATAAAAAAGATAGACCAGTTCTCTGAGACTCCGGAGGGGACCTGCTATACCTCATATGGGAAGGAAATCCTGCCCCAC------AAAGAAGGGTTAGAATATGTCCAACAGATACATCGTCTCACCCACCTAGGAACTAAACACCTGCAGCAGTTGGTCAGAACATCCCCTTATCATGTTCTGAGGCTACCAGGAGTGGCTGACTCGGTGGTCAAACATTGTGTGCCCTGCCAGCTGGTTAATGCT------AATCCTTCCAGAATACCTCCAGGAAAGAGACTAAGGGGAAGCCACCCAGGCGCTCACTGGGAAGTGGACTTC---ACTGAGGTAAAGCCGGCTAAATACGG

AAACAAATATCTATTGGTTTTTGTAGACACCTTTTCAGGATGGGTAGAGGCTTATCCTACTAAGAAAGAGACTTCAACCTTGGTGGCTAAAAAAATACTGGAGGAAATTTTTCCGAGATTTGGAATACCTAAGGTAATCGGGTCAGACAATGGTCCAGCTTTTGTTGCCCAGGTAAGTCAGGGACTGGCCAAGATATTGGGGATTGATTGGAAACTGCATTGTGCATACAGACCCCAAAGCTCAGGACAGGTAGAGAGGATGAATAGAACCATTAAAGAAACCCTTACCAAATTGACCACA------GAGACTGGCATTAATGATTGGATGGCTCTCCTG---------CCCTTTGTGCTTTTTAGGGTGAGGAACACCCCTGGACAGTTTGGGCTGACCCCCTATGAATTGCTCTACGGGGGACCCCCCCCGTTG------GCAGAAATTGCCTTTGCACATAGTGCTGATGTGCTG------CTTTCCCAGCCTTTGTTCTCTAGGCTCAAGGCGCTCGAGTGGGTGAGGCAGCGAGCGTGGAAGCAGCTCCGGGAGGCCTACTCAGGAGGAGACTTGCAAGTTCCACATCGCTTCCAAGTTGGAGATTCAGTCTATGTTAGACGCCACCGTGCAGGAAACCTCGAG------ACTCGGTGGAAGGGACCTTATCTCGTACTTTTGACCACACCAACGGCTGTGAAAGTCGAAGGAATCCCCACCTGGATCCATGCATCCCACGTTAAGCCGGCGCCACCTCCCGATTCGGGGTGGAAAGCCGAAAAGACTGAAAATC---CCCTTAAGCTTCGCCTCCATCGCGTGGTTCCTTACTCTGTCAATAACTCCTCAAGTTAAT---GGTAAACGCCTTGTGGACAGCCCG------------AACTCCCATAAACCCTTATCTCTCACCTGGTTACTTACT---GACTCCGGT------ACAGGTATTAATATTAACAGCACTCAAGGGGAGGCTCCCTT

GGGGACCTGGTGGCCTGAATTATATGTCTGCCTTCGATCAGTAATCCCTGGTCTCAATGACCAGGCCACACCCCCCGATGTACTCCGTGCTTACGGG------TTTTACGTTTGCCCA------GGACCCCCAAATAATGAAGAATAT---TGTGGAAATCCTCAGGATTTCTTTTGCAAGCAATGGAGCTGCATAACTTCTAATGATGGGAATTGGAAATGGCCAGTCTCTCAGCAAGACAGAGTAAGTTACTCTTTTGTTAACAATCCTACCAGTTATAATCAATTTAATTATGGCCATGGGAGATGGAAAGATTGGCAACAGCGGGTACAAAAAGATGTACGAAATAAG---CAAATAAGCTGTCATTCGTTAGACCTAGATTACTTAAAAATAAGTTTCACT---------GAAAAAGGAAAACAAGAAAATATTCAAAAGTGGGTAAATGGTATATCTTGGGGAATAGTGTACTATGGAGGCTCTGGGAGAAAGAAAGGATCTGTTCTGACTATTCGCCTCAGAATAGAAACTCAGATGGAACCTCCGGTTGCTATA------GGACCAAATAAGGGTTTGGCCGAACAAGGACCTCCAATCCAAGAACAGAGGCCATCTCCTAACCCCTCTGATTACAATACAACCTCTGGATCAGTCCCCACTGAGCCTAACATCACTATTAAAACAGGGGCGAAACTTTTTAGCCTCATCCAGGGAGCTTTTCAAGCTCTTAACTCCACGACTCCAGAGGCTACCTCTTCTTGTTGGCTTTGCTTAGCTTCGGGCCCACCTTACTATGAGGGAATGGCTAGAGGAGGGAAATTCAATGTGACAAAGGAACATAGAGACCAATGTACATGGGGATCCCAAAATAAGCTTACCCTTACTGAGGTTTCTGGAAAAGGCACCTGCATAGGGATGGTTCCCCCATCCCACCAACACCTTTGTAACCACACTGAAGCCTTTAATCGAACCTCTGAGAGTCAATATCTG

GTACCTGGTTATGACAGGTGGTGGGCATGTAATACTGGATTAACCCCTTGTGTTTCCACCTTGGTTTTCAACCAAACTAAAGACTTTTGCGTTATGGTCCAAATTGTCCCCCGGGTGTACTACTATCCCGAAAAAGCAGTCCTTGATGAATATGACTATAGATATAATCGGCCAAAAAGAGAGCCCATATCCCTGACCCTAGCTGTAATGCTCGGATTAGGGACGGCCGTTGGCGTAGGAAC..............................................................................................................................................GTTCTACAGAACAGAAGGGGGTTAGATCTGTTATTTCTAAAAGAAGGAGGGTTATGTGTAGCCTTAAAAGAGGAATGCTGCTTCTATGTAGATCACTCAGGAGCCATCAGAGACTCCATGAGCAAGCTTAGAGAAAGGTTAGAGAGGCGTCGAAGGGAAAGAGAGGCTGACCAGGGGTGGTTTGAAGGATGGTTCAACAGGTCTCCTTGGATGACCACCCTGCTTTCTGCTCTGACGGGGCCCCTAGTAGTCCTGCTCCTGTTACTTACAGTTGGGCCTTGCTTAATTAATAGGTTTGTTGCCTTTGTTAGAGAACGAGTGAGTGCAGTCCAGA-TCATGGTACTTAGGCAACAGTACCAAGGCCTTCTGAGCCAAGGAGAAACTGACCTCTAGCCTTCCCAGTTCTAAGATTAGAACTATTAACAAGACAAGAAGTGGGGAATGAA.........................................................................................................................................................................

100

200

300

400

500

600

700

800

900

1000

1100

1200

1300

1400

1500

1600

1700

1800

1900

2000

2100

2200

2300

2400

2500

2600

2700

2800

2900

3000

3100

3200

3300

3400

3500

3600

3700

3800

3900

4000

4100

4200

4300

4400

4500

4600

4700

4800

4900

5000

5100

5200

5300

5400

5500

5600

5700

5800

5900

6000

6100

6200

6300

6400

6500

6600

6700

6800

6900

7000

7100

7200

7300

7400

7500

7600

7700

7800

7900

8000

gag

MGQDNSTPISLTLNHWRDVRTRAHNLSVEIKKGKWQTFCSSEWPTFGVGWPPEGTFNLSVIFAVKKIVFQENGGHPDQVPYIVVWQDLAQNPPPWVPASAKVAVVSDTRRPVAGRPSAPPRPPIYPATDDLLLLSEPT--PPPYPAALPPPLAPQ-AIGPPSGQMPDSSDPEGPAAGTRSRRARSPADNSGPDSTVILPLRAIGPPAEPNG-LVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRERLLVYRRTLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAMAFIGQSAPDIKKKLQRLEGLQDYSLQDLVKEAEKVYHKRETEEERQEREKKEAEEKERRRDRPKKKNLTKILAAVVSREGSTGRQTGNLSNQAKKTPRDGRPPLDKDQCAYCKEKGHWARECPRKKHVREAKVLALDN*

MGQTVTTPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTFDVGWPSEGTX.................XHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKHSAEKVEPSPRIYPEIEEPPTWPEPQPVP-PPPYPAQGAVRGPSAP-PGAPVVEGPAAGTRSRRGATPE---RTDEIAILPLRTYGPP-MPGGQLQPLQYWP.................................................................................................................................................................................................................................................................................................................

pro-pol

GSQGSDPLPEPRVTLTVEGTPIEFLVDTGAEHSVLTQPMGKVGSRRTVVEGATGSKVYPWTTKRLLKIGHKQVTHSFLVIPECPAPLLGRDLLTKLKAQIQFSAEGPQVTWGERPTMCLVLNLEEEYRLHEKPVPSSIDPSWLQLFPTVWAERAGMGLANQVPPVVVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLVPCRSPWNTPLLPVKKPGTNDYRPVQDLREINKRVQDIHPTVPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRLHPNSQPLFAFEWKDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVLLQYVDDLLVAAPTYEDCKKGTQKLLQELSKLGYRVSAKKAQLCQREVTYLGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASHSLESIVRQPPDRWMTNARMTHYQSLLLNERVSFAPPAVLNPATLLPVESEATPV-HRCSEILAEETGTRRDLEDQPLPG-VPTWYTDGSSFITEGKRRAGAPIVDGKRTVWASSLPEGTSAQKAELVALTQALRLAEGKNINIYTDSRYAFATAHIHGAIYKQRGLLTSAGKDIKNKEEILALLEAIHLPRRVAIIHCPGHQRGSNPVATGNRRADEAAKQAALSTRVLAGTTKPQEPIEPAQEKTRPRELTPDRGKEFIKRLHQLTH---------LGPEKLLQLVNRTSLLIPNLQSAVREVTSQCQACAMTNAVTTYRETGKRQRGDRPGVYWEVDFTEIKPGRYGNKYLLVFIDTFSGWVEAFPTKTETALIVCKKILEEILPRFGIPKVLGSDNGP-AFVAQ-VSQGLATQLGINWKLHCAYRPQSSGQV-ERMNRTI--

........................................................................................................................................................................................................................................................................................................................................................................................................XKRWLTEARKKTVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGGFSWAPEHQKAFDAIKKALLSAPALALPDVTKPFTLYVDERKGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPVCLKAIAAVAILVKDADKLTLGQNITVIAPHALENIVRQPPDRWMTNARMTHYQSLLLTERVTFAPPAALNPATLLPEETDE-PVTHDCHQLLIEETGVRKDLTDIPLTGEVLTWFTDGSSYVVEGKRMAGAAVVDGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSINIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQKAKDLISRGNQMADRVAKQAAQAVNLLPIIETPKAP-EP-----R-RQYTLEDWQE-IKKIDQFSETPEGTCYTSYGKEILPH--KEGLEYVQQIHRLTHLGTKHLQQLVRTSPYHVLRLPGVADSVVKHCVPCQLVNA--NPSRIPPGKRLRGSHPGAHWEVDF-TEVKPAKYGNKYLLVFVDTFSGWVEAYPTKKETSTLVAKKILEEIFPRFGIPKVIGSDNGPAFVAQVSQGLAKILGI

--KETLTKLALETGGKDWVTLLPLALLRARNTPGRFGLTPYEILYGGPPPIL-----ESGETLGPDDRFLPVLFTHLKALEIVRTQIWDQIKEVYKPGTVTIPHPFQVGDQVLVRRHRPSS-----LEPRWKGPYLVLLTTPTAVKVDGIAAWVHASHLKPAPPSAPDE----SWELEKTDHPLKLRIRRRRDESAK*

DWKLHCAYRPQSSGQVERMNRTIKETLTKLTT--ETGINDWMALL---PFVLFRVRNTPGQFGLTPYELLYGGPPPL--AEIAFAHSADVL--LSQPLFSRLKALEWVRQRAWKQLREAYSGGDLQVPHRFQVGDSVYVRRHRAGNLE--TRWKGPYLVLLTTPTAVKVEGIPTWIHASHVKPAPPPDSGWKAEKTEN

GALVgp3

MVLLPGSMLLTSNLHHLRHQMS----PGSWKRLIILLSCVFGGGGTSLQNKNPHQPMTLTW-QVLSQTGDVVWDTKAVQPPWTWWPTLKPDVCALAASLESWDIPGTDVSSSKRVRPPDSDYTAAY---KQITWGAIGCSYPRARTRMASSTFYVCPRDGRTLSEARRCGGLESLYCKEWDCETTGTGYWLSKSS-KDLITVKWDQNSEWTQKFQQCH--QTGWCNPLKIDFTDKGKLSKDWITGKTWGLRFYVSGHPGVQFTIRLKITNMPAVAVGPDLVLVEQGP-----PRTSLALPPPLPPREAPPPSLPDSNSTALATSA-QTPTVRKTIV-TLNTPPPT---TGDRLFDLVQGAFLTLNATNPGATESCWLCLAMGPPYYEAIASSGEVAYSTDL-DRCRWGTQGKLTLTEVSGHGLCIGKVPFTHQHLCNQTLSINSSGDHQYLLPSNHSWWACSTGLTPCLSTSVFNQTRDFCIQVQLIPRIYYYPEEVLLQAYDNSHPRTKREAVSLTLAVLLGLGITAGIGTGSTALIKGPIDLQQGLTSLQIAIDADLRALQDSVSKLEDSLTSLSEVVLQNRRGLDLLFLKEGGLCAALKEECCFYIDHSGAVRDSMKKLKEKLDKRQLERQKSQNWYEGWFNNSPWFTTLLSTIAGPLLLLLLLLILGPCIINKLVQFINDRISAC*

R--LGGRDLISYF*PHQRL*KSKESPPGSMHPTLSRRHLPIRGGKPKRLKI-PLSFASIAWFLTLSITPQVN-GKRLVDSP----NSHKPLSLTWLLT-DSG--TGININSTQGEAPLGTWWPELYVCLRSVIPGLNDQATPPDVLRAYG--FYVCP--GPPNNEEY-CGNPQDFFCKQWSCITSNDGNWKWPVSQQDRVSYSFVNNPTSYNQFNYGHGRWKDWQQRVQKDVRNK-QISCHSLDLDYLKISFT---EKGKQENIQKWVNGISWGIVYYGGSGRKKGSVLTIRLRIETQMEPPVAI--GPNKGLAEQGPPIQEQRPSPNPSDYNTTSGSVPTEPNITIKTGAKLFSLIQGAFQALNSTTPEATSSCWLCLASGPPYYEGMARGGKFNVTKEHRDQCTWGSQNKLTLTEVSGKGTCIGMVPPSHQHLCNHTEAFNRTSESQYLVPGYDRWWACNTGLTPCVSTLVFNQTKDFCVMVQIVPRVYYYPEKAVLDEYDYRYNRPKREPISLTLAVMLGLGTAVGVGX...............................................VLQNRRGLDLLFLKEGGLCVALKEECCFYVDHSGAIRDSMSKLRERLERRRREREADQGWFEGWFNRSPWMTTLLSALTGPLVVLLLLLTVGPCLINRFVAFVRERVSAVQ

Alignment Detailed Statistics


	Begin	End	Coverage	Score	Concordance	Matches	Identities	I/D/M/F^*	Stop Codons
NT	623	7656	58.7%	35	0.4%	4592 (93.3%)	2513 (51.1%)	175/154
Mutations:	627C>T 639A>G 640G>A 641A>C 642T>A 643A>G 644A>T 645T>G 646T>A 654T>C 655A>C 657C>T 658T>A 659C>G 660C>T 661C>T 663C>G 669A>C 670A>G 672T>C 675C>T 680G>C 681A>T 684T>A 687G>T 691A>T 693A>C 702C>T 706C>T 708A>G 711C>A 714G>T 715G>C 717A>G 718A>G 720C>T 723A>G 730A>C 731A>C 732A>T 748T>G 753C>T 756G>A 762C>A 770G>A 771C>T 774G>T 777G>A 784C>T 786G>A 789G>A 792A>G 795T>C 852A>T 858G>T 861C>T 864A>G 866T>A 867T>G 870A>C 877G>C 879G>T 880G>A 881T>C 882A>G 888G>A 891C>T 892C>T 894C>G 897C>A 898C>G 900G>A 901A>G 906C>T 909A>G 918G>T 919C>A 920C>A 922G>C 924C>A 926C>G 927C>G 928G>C 929C>T 930C>A 933G>T 934G>A 935T>A 936C>A 937G>C 939T>A 940G>A 941T>G 942T>A 943G>A 944T>A 945C>G 946T>C 948T>A 950A>G 952A>C 959G>T 960A>C 962C>T 963A>G 965T>C 967G>C 968C>T 969G>T 972G>A 973A>G 974G>A 976C>A 977C>A 979T>A 980C>A 981A>C 982G>A 983C>A 984T>A 986C>A 987T>C 988C>T 990C>G 991C>G 992G>C 993A>C 994C>G 995C>A 996C>A 997C>A 998C>A 999C>A 1000A>G 1003T>G 1005C>G 1008G>C 1009G>T 1011A>T 1012A>C 1014A>T 1015G>C 1016A>G 1017C>T 1018G>A 1019A>T 1022T>A 1023A>C 1025T>C 1027C>G 1028T>A 1029C>G 1030C>A 1033T>G 1034C>A 1035T>G 1038A>G 1041C>G 1042A>C 1044_1045insACTTGG 1047C>G 1048C>G 1049C>A 1050G>A 1054T>C 1056T>A 1059G>T 1061C>T 1062G>T 1063G>C 1065A>C 1066_1068delCTG 1078C>T 1079T>A 1080G>T 1081G>C 1083C>A 1084C>G 1086T>A 1089_1090insGGT 1092G>T 1093A>G 1095C>G 1096G>A 1098A>G 1099C>G 1100C>G 1101G>A 1104G>C 1107A>T 1109G>C 1112A>C 1113G>T 1114_1116delATG 1119C>T 1121A>G 1122T>A 1123A>G 1124G>C 1126A>C 1127G>C 1128C>G 1130A>T 1131T>G 1132C>G 1133C>T 1134T>G 1140G>A 1143A>T 1146C>T 1149T>C 1155C>T 1156A>C 1161T>C 1164C>G 1165C>A 1167T>A 1169C>G 1171C>G 1172G>C 1175G>C 1176T>C 1179A>G 1181C>A 1182A>G 1183_1191delGACAACTCG 1192G>C 1194T>G 1195C>A 1197T>A 1201T>G 1202C>A 1203C>G 1205C>T 1206T>C 1208T>C 1212T>A 1215G>A 1218C>G 1221C>G 1224A>C 1225G>A 1228A>T 1229T>A 1230A>T 1233A>C 1236C>T 1239G>C 1240_1242delGCC 1243G>A 1244A>T 1248C>A 1249A>G 1250A>G 1251T>G 1254_1255insCAA 1255C>T 1258G>C 1259T>A 1260C>G 1263T>C 1266A>C 1269A>G 1278T>C 3384A>G 3387C>G 3388C>G 3389C>A 3390A>G 3393C>A 3396A>G 3400G>A 3401C>A 3402T>A 3408T>A 3409A>G 3411G>C 3412A>C 3414A>G 3417C>A 3420T>G 3422T>C 3423T>C 3426T>A 3429G>C 3432C>A 3433C>G 3437G>A 3441G>A 3444C>G 3445C>A 3447T>A 3450A>G 3454C>T 3456A>G 3459C>G 3462T>A 3465C>T 3471C>T 3477G>A 3480C>G 3489T>G 3498T>G 3499T>A 3502C>T 3504G>A 3507T>A 3510A>C 3513C>A 3514T>C 3516G>C 3522C>G 3528A>C 3534G>A 3536G>A 3537C>A 3538A>G 3539T>G 3540C>G 3541C>G 3542C>G 3543T>A 3546T>C 3547A>T 3548T>C 3549T>C 3553A>G 3556G>C 3557A>C 3558G>T 3561A>G 3564T>C 3568C>A 3573T>A 3579C>T 3580C>G 3581A>C 3582C>T 3585A>C 3591A>G 3595T>C 3601T>A 3602C>G 3603A>C 3606C>A 3612A>T 3613T>C 3624A>T 3628C>G 3630C>A 3633C>T 3636G>A 3639A>C 3642C>T 3645T>C 3648A>T 3652A>G 3654A>G 3661A>C 3663A>T 3664G>A 3665C>A 3666C>G 3669C>A 3672G>A 3678G>A 3684G>T 3685C>T 3687C>A 3690T>C 3693G>A 3696T>C 3697T>C 3705C>A 3709C>A 3712C>A 3714G>A 3717A>T 3720A>T 3723A>C 3726T>C 3729A>G 3735A>G 3738A>G 3741G>T 3747G>T 3750G>A 3756C>T 3759G>T 3765A>C 3766A>G 3767C>T 3768C>A 3771C>T 3777A>G 3780G>T 3781G>A 3783T>C 3789A>T 3792A>G 3795A>C 3796C>A 3798C>A 3801T>G 3802C>G 3807A>G 3816T>C 3819G>A 3822A>G 3825C>T 3834A>G 3838G>A 3840G>A 3846G>A 3849T>A 3852T>C 3853T>C 3859A>G 3860G>C 3861C>A 3862C>T 3864C>G 3867A>G 3869G>A 3876G>T 3882A>G 3888C>A 3894G>A 3906T>C 3910A>C 3912A>C 3918T>C 3921T>C 3924C>T 3927G>A 3936G>T 3937T>C 3939A>C 3941A>C 3942T>A 3945A>G 3951A>C 3952T>A 3954G>T 3957T>C 3960G>T 3963C>A 3966T>A 3969T>C 3971T>C 3972C>T 3975A>C 3981A>T 3984T>C 3987C>T 3990A>T 3993T>G 3996A>T 3998T>A 3999C>A 4003T>A 4005G>T 4008A>T 4010C>A 4011C>A 4012_4014delACC 4020_4021insACT 4023C>T 4024A>G 4025G>A 4026G>T 4030T>C 4031C>A 4032A>T 4033G>C 4036A>C 4038C>A 4039C>T 4041C>G 4042G>A 4043C>T 4044C>T 4047A>G 4050A>G 4056A>G 4057A>G 4058C>T 4059T>C 4062A>C 4063C>A 4064G>A 4065A>G 4071A>T 4072G>A 4073A>C 4078C>A 4079A>T 4083A>G 4084T>C 4087C>A 4089C>T 4092G>A 4092_4093insGAA 4097C>T 4106A>T 4107T>C 4110A>T 4116T>A 4122T>C 4124T>A 4125C>T 4126A>G 4128C>G 4129A>G 4130C>T 4140A>G 4141C>A 4145G>T 4146A>G 4149A>T 4155C>G 4156C>G 4158G>A 4159A>G 4161C>G 4164A>G 4167T>C 4170C>G 4172A>C 4173G>C 4176G>C 4180G>A 4182A>C 4188T>C 4200A>G 4206T>A 4209G>T 4215C>G 4218G>A 4227A>G 4230A>C 4231G>A 4233A>G 4237T>C 4239G>C 4245G>A 4248A>T 4251A>G 4254C>G 4266A>G 4270A>T 4271A>C 4275C>A 4281C>T 4284C>T 4302T>C 4308C>G 4314T>A 4317T>C 4318A>G 4320T>A 4323T>C 4329A>C 4332A>C 4338G>A 4341G>A 4348C>T 4353C>T 4356T>C 4359T>A 4362T>A 4365A>G 4367A>G 4368A>G 4371T>A 4374C>A 4377A>G 4393T>C 4395G>A 4396G>A 4397C>G 4401G>A 4402C>T 4407G>A 4411A>T 4413C>A 4417C>T 4419C>G 4422T>A 4424G>A 4425G>A 4426C>A 4429G>C 4431C>A 4434C>T 4440C>A 4452C>A 4455C>T 4460G>A 4461G>A 4463G>C 4464A>C 4466G>A 4467T>A 4468A>G 4470C>T 4472C>T 4473T>C 4474G>A 4476G>A 4477G>T 4479C>T 4481C>G 4482T>A 4490G>A 4493G>T 4497C>T 4501G>C 4502A>G 4505C>T 4509A>C 4515A>G 4518C>A 4523T>A 4525T>G 4527G>T 4528A>G 4529C>T 4530C>T 4532G>A 4533A>C 4534G>C 4536G>T 4540G>C 4542A>T 4543G>A 4544G>T 4547C>T 4548T>A 4549A>G 4550C>A 4553A>C 4554A>G 4557T>C 4558C>A 4562A>C 4563G>C 4567_4569delATC 4572G>A 4576_4590delGCTCAAGAAAAGACC 4593G>A 4594_4596delCCG 4597A>C 4599G>A 4600G>C 4603C>T 4604T>A 4610C>T 4611T>A 4614C>A 4615C>G 4616G>A 4617G>C 4618G>T 4620A>G 4621A>C 4626A>G 4627_4629delTTC 4632T>A 4635G>A 4636C>A 4637G>A 4639T>A 4642C>G 4644T>C 4650A>C 4651A>T 4654C>G 4656C>G 4656_4657insACTCCGGAGGGGACCTGCTATACCTCA 4658T>A 4659A>T 4662A>G 4663C>A 4664C>A 4665A>G 4670A>T 4671G>C 4674T>G 4676T>C 4680A>C 4681_4686delCTAGTG 4689C>A 4690C>G 4691G>A 4692T>A 4693A>G 4694C>G 4695C>G 4696A>T 4697G>T 4698C>A 4699C>G 4700T>A 4701C>A 4702C>T 4703T>A 4704C>T 4705A>G 4709C>A 4710G>A 4711A>C 4713C>G 4714C>A 4716C>A 4719A>T 4720T>C 4721C>G 4723G>C 4724C>T 4725A>C 4726G>A 4727T>C 4728T>C 4730G>A 4732G>C 4733A>T 4736T>G 4737C>A 4740C>T 4742G>A 4743T>A 4746G>C 4747T>C 4748G>T 4749T>G 4753G>C 4754C>A 4755T>G 4757G>T 4758T>G 4760C>T 4763T>G 4764G>A 4767T>A 4768A>T 4769A>C 4770T>C 4771G>C 4773G>T 4774G>T 4775T>A 4776C>T 4777A>C 4778C>A 4779C>T 4780A>G 4781C>T 4782C>T 4783T>C 4784A>T 4785C>G 4788A>G 4789G>C 4790A>T 4791G>A 4792A>C 4794C>A 4798A>G 4799A>T 4800A>G 4801A>G 4802G>C 4803G>T 4804C>G 4806A>C 4807C>T 4808G>C 4809A>G 4811G>T 4812A>G 4814A>T 4815T>C 4816C>A 4817G>A 4820C>A 4821C>T 4822G>T 4824C>T 4828T>C 4829A>C 4833G>C 4834G>C 4837G>C 4839A>G 4841A>T 4842C>T 4843T>A 4844T>A 4845C>T 4846A>G 4848A>T 4849_4854delGAAATA 4857G>T 4861G>T 4862G>C 4863T>C 4864C>A 4866G>A 4867T>A 4868A>T 4869T>A 4870G>C 4871G>C 4872A>T 4873A>C 4874A>C 4875C>A 4876A>G 4877A>G 4878G>A 4879T>A 4881T>G 4882C>A 4883T>G 4884G>A 4885T>C 4888G>A 4889T>G 4890A>G 4891T>G 4892T>G 4893C>A 4895T>G 4896A>C 4897G>C 4899T>C 4900A>C 4902T>A 4903T>G 4904T>G 4906T>G 4908C>T 4909G>C 4910G>A 4911A>C 4916T>A 4919A>T 4920A>G 4922C>A 4923T>C 4926T>C 4927_4929delCCT 4932C>T 4933A>G 4935A>G 4936A>G 4937C>T 4938T>A 4939G>A 4941A>G 4942A>C 4947C>T 4948C>A 4949T>A 4951A>T 4952T>A 4955T>G 4956C>A 4957T>A 4958G>A 4959T>C 4963A>T 4965A>T 4966A>C 4971A>G 4973A>T 4974A>T 4975G>T 4976A>T 4977A>T 4978A>G 4980T>A 4981C>G 4982T>A 4983A>C 4984C>A 4987C>T 4988G>T 4989C>T 4991T>C 4992C>A 4995G>A 4996A>T 4997T>G 4998C>G 4999C>G 5000C>T 5001T>A 5002A>G 5006T>C 5007A>T 5008C>T 5009T>A 5010C>T 5011G>C 5012G>C 5013G>T 5014T>A 5016A>T 5017G>A 5019C>G 5022T>A 5024G>A 5025C>G 5026C>A 5028G>T 5028_5029insTCA 5029G>A 5034T>G 5037T>G 5041C>A 5043G>A 5043_5044insAAA 5044G>A 5047A>C 5048G>T 5049T>G 5050C>G 5054G>A 5056C>A 5058G>T 5059G>T 5060C>T 5061C>T 5062A>C 5064T>G 5065C>A 5066A>G 5068C>T 5070G>T 5073G>A 5077A>C 5078A>C 5080T>A 5081G>A 5083A>G 5084A>T 5085G>A 5086T>A 5088A>C 5089C>G 5090A>G 5091T>G 5093G>C 5094T>A 5096C>A 5097G>C 5098T>A 5101A>G 5103A>T 5106C>A 5107C>G 5108A>C 5109G>T 5110A>T 5111G>T 5112C>T 5113T>G 5114C>T 5115A>T 5117G>C 5118T>C 5124_5125insAGT 5125G>C 5127A>G 5128A>G 5131A>C 5134A>G 5135A>C 5138G>A 5139A>G 5141C>T 5143A>T 5145T>G 5145_5146insGGGATTGATTGG 5149G>C 5150A>T 5152A>C 5153C>A 5154C>T 5156T>G 5157G>T 5158A>G 5160C>A 5161A>T 5163A>C 5164T>A 5165T>G 5167G>C 5170T>C 5171T>A 5173G>A 5174A>G 5175G>C 5176A>T 5178C>A 5181T>A 5182G>C 5183G>A 5184A>G 5185A>G 5186A>T 5190C>G 5191T>A 5194G>A 5198C>A 5199C>T 5200C>A 5201T>G 5202C>A 5203C>A 5204T>C 5205T>C 5206C>A 5207C>T 5208C>T 5209T>A 5210T>A 5213C>A 5214G>A 5215C>A 5216T>C 5217G>C 5222G>C 5223G>C 5224G>A 5225C>A 5226C>A 5227A>T 5228G>T 5231A>C 5232T>C 5235C>A 5236_5241delCCTGGC 5242C>G 5243G>A 5245T>A 5246T>C 5250T>C 5251T>A 5253A>T 5255C>A 5257C>G 5258C>A 5261A>G 5262T>G 5263G>A 5264A>T 5265A>G 5266A>G 5267T>C 5272T>C 5273A>T 5274T>G 5275_5283delGGAGGACCA 5287C>T 5288C>T 5289C>T 5290A>G 5292A>G 5295_5296insTTTAGGGTGAGGAAC 5296G>A 5297A>C 5298G>C 5299T>C 5305G>C 5307A>G 5308A>T 5309C>T 5311T>G 5312T>G 5314G>C 5315G>T 5316T>G 5317C>A 5320G>C 5321A>C 5322T>C 5323G>T 5326A>G 5327G>A 5331T>G 5335C>T 5336C>A 5337T>C 5339T>G 5340C>G 5341T>G 5342T>G 5344T>C 5345T>C 5346T>C 5347A>C 5349T>C 5351A>C 5352C>G 5355A>G 5356_5361delAAGGCT 5362T>G 5363T>C 5372T>C 5373A>C 5374A>T 5375G>T 5376G>T 5377A>G 5379C>A 5382A>T 5384T>G 5385C>T 5386T>G 5387G>C 5388G>T 5391C>T 5392C>G 5393A>T 5395A>C 5397C>G 5398_5403delAAAGAG 5404G>C 5406G>T 5408A>C 5409T>C 5410A>C 5416G>T 5417G>T 5418T>G 5419A>T 5420C>T 5422G>T 5423T>C 5424A>T 5426C>G 5427A>G 5428A>C 5431C>A 5432C>A 5433T>G 5434C>G 5435A>C 5436C>G 5438C>T 5439G>C 5440T>G 5441T>A 5442C>G 5443C>T 5444A>G 5448C>G 5449G>A 5452G>C 5454T>G 5456A>G 5459T>C 5461C>T 5462T>G 5463T>G 5464G>A 5465T>A 5466C>G 5467A>C 5468G>A 5469A>G 5471G>T 5474A>G 5475T>G 5476C>G 5477G>A 5478A>G 5479C>G 5482A>T 5483G>A 5485A>T 5486G>C 5487C>A 5487_5488insGGAGGAGACTTGCAA 5488C>G 5491G>C 5492A>C 5493G>A 5495C>A 5499G>C 5501G>T 5502G>C 5503A>C 5507G>T 5508C>T 5509C>G 5510C>G 5512T>G 5514C>T 5515C>T 5516T>C 5517G>A 5520G>C 5522T>A 5523G>T 5524C>G 5526G>T 5528C>G 5529T>A 5530A>C 5531C>G 5534C>A 5535G>C 5536A>C 5537C>G 5538C>T 5541G>A 5543T>G 5547A>C 5548G>C 5553T>G 5554_5559delGGTATT 5560G>A 5563G>C 5564C>G 5565C>G 5569G>A 5570T>A 5571C>G 5572C>G 5573A>G 5574T>A 5575G>C 5579C>A 5582A>T 5584C>G 5586C>A 5587A>C 5588A>T 5589A>T 5590C>T 5591C>T 5592T>G 5593G>A 5595A>C 5596C>A 5601T>A 5602T>A 5607A>T 5608C>G 5609C>T 5610A>G 5611G>A 5613T>A 5615A>T 5616G>C 5617T>G 5617_5618insAAGGAATCCCCA 5623G>A 5624A>T 5625G>C 5627T>A 5628G>T 5630A>C 5632A>T 5633A>C 5634G>C 5635A>C 5636C>A 5637T>C 5639A>T 5641C>A 5643T>G 5646T>G 5647C>G 5648T>C 5649T>G 5650A>C 5651A>C 5652G>A 5654T>C 5655G>T 5657G>C 5658T>C 5659A>G 5660T>A 5662C>T 5663G>C 5665C>G 5668C>T 5671C>A 5672G>A 5673G>A 5675A>C 5679G>A 5680T>A 5681C>A 5682T>G 5683G>A 5685A>T 5686A>G 5689T>A 5691A>T 5692G>C 5693_5695delAAC 5699C>T 5700A>T 5701C>A 5702C>A 5703A>G 5704G>C 5705C>T 5706C>T 5708A>G 5709T>C 5710G>C 5711A>T 5714C>A 5717A>G 5719T>G 5722_5723insTTC 5724A>T 5725G>T 5726G>A 5727T>C 5728A>T 5734C>A 5735C>A 5736A>T 5741G>C 5742G>C 5743A>T 5744G>C 5746C>A 5750G>A 5751T>A 5752C>T 5753_5755delTGG 5757A>G 5760C>A 5762A>C 5763A>G 5764G>C 5765G>C 5766C>T 5767A>T 5770C>G 5771C>G 5773G>C 5774C>A 5775C>G 5779T>G 5780_5791delTGGACTTGGTGG 5792C>A 5793C>A 5795A>T 5797A>C 5799T>A 5806T>C 5807G>T 5808A>T 5809T>A 5810G>T 5811T>C 5812A>T 5813T>C 5814G>T 5815T>C 5816G>A 5820T>G 5822G>T 5823C>T 5824G>A 5825G>C 5826C>T 5829G>C 5831_5833delCTT 5836G>C 5840T>G 5842G>T 5843_5848delGATATC 5849C>A 5851G>A 5854A>T 5856C>T 5857C>T 5858G>A 5861G>A 5863C>T 5864T>A 5865C>A 5866G>C 5867T>A 5868C>G 5870T>A 5873A>C 5876C>G 5878A>G 5880T>A 5881C>G 5882A>G 5883G>C 5884A>T 5887T>C 5888C>T 5889C>T 5892A>G 5893C>G 5894T>A 5896A>C 5897G>T 5898A>G 5899C>G 5901A>G 5902T>G 5903A>C 5907C>A 5908C>A 5909G>T 5910C>T 5911T>A 5914_5915insGTCTGCCTT 5915A>C 5916A>G 5917G>A 5918C>T 5919A>C 5921A>G 5923C>A 5925C>T 5927T>C 5928G>C 5929G>T 5932A>T 5933G>C 5934C>T 5937T>A 5938A>T 5940G>A 5941G>C 5942T>C 5943G>A 5944C>G 5945A>G 5946G>C 5948T>A 5949A>C 5950C>A 5953T>C 5955G>C 5956G>C 5958C>A 5960A>G 5961G>T 5962G>A 5963A>C 5964C>T 5965T>C 5966A>C 5968A>T 5969A>G 5970T>C 5971G>T 5972G>T 5973C>A 5974A>C 5975A>G 5977C>G 5978_5983delTCTACC 5986C>T 5992A>T 5995T>C 5998C>A 5999_6004delCGGGAT 6007C>A 6009G>C 6010G>C 6011A>C 6013C>A 6014C>A 6015T>A 6017T>A 6018C>A 6019A>T 6024C>A 6025T>A 6026A>T 6027G>A 6028A>T 6029_6031delAGG 6034C>T 6037G>A 6038G>A 6039G>A 6040G>T 6042T>C 6043A>T 6044G>C 6046A>G 6047T>G 6048C>A 6049C>T 6050C>T 6052A>C 6054A>T 6055C>T 6058T>C 6061A>G 6062G>C 6068G>A 6069A>G 6070T>C 6073T>C 6074G>A 6075A>T 6076G>A 6079C>T 6080A>T 6082G>T 6083G>A 6084G>A 6085G>T 6086A>G 6087C>A 6088C>T 6091T>G 6092T>A 6098C>A 6099T>A 6102C>G 6103T>G 6104A>C 6105A>C 6107T>G 6108C>T 6112A>T 6112_6113insCAG 6113A>C 6119C>A 6120T>G 6121C>A 6122A>G 6126C>G 6128G>T 6129T>A 6130A>C 6131A>T 6132A>C 6133A>T 6135G>T 6136G>T 6138A>T 6139C>T 6140C>A 6142A>C 6146A>C 6147G>C 6148C>T 6149G>A 6150A>C 6151A>C 6152T>A 6154G>T 6155A>T 6156C>A 6158C>A 6160A>T 6161A>C 6167C>A 6169A>T 6170C>T 6172G>T 6173T>G 6175T>C 6178C>T 6178_6179insGGGAGA 6179C>T 6180A>G 6183C>A 6184C>A 6186G>A 6187C>T 6191T>C 6192G>A 6193T>A 6194A>C 6196C>G 6198C>G 6199C>G 6200C>G 6202T>A 6203A>C 6207T>A 6212T>G 6214C>A 6215A>C 6216C>G 6218G>A 6220C>T 6223A>G 6224_6226delGGA 6227A>C 6230T>A 6233T>A 6234C>G 6236A>T 6237A>G 6238G>T 6239G>C 6241C>T 6243G>C 6245A>T 6248A>G 6249C>A 6250G>C 6251G>C 6252G>T 6254A>G 6256A>T 6257A>T 6258C>A 6261G>T 6262G>A 6263G>A 6264G>A 6266T>A 6271A>T 6275T>A 6276A>C 6278_6286delGTGTCTGGA 6287C>G 6289T>A 6290C>A 6291C>A 6295C>A 6296G>A 6297T>A 6301G>A 6302T>G 6303T>A 6304C>A 6306C>A 6307C>T 6312G>A 6313C>A 6314T>A 6315T>A 6316A>G 6317A>T 6318A>G 6319A>G 6320A>G 6322C>A 6324C>A 6325C>T 6326A>G 6327A>G 6328C>T 6331G>A 6332C>T 6334A>T 6335G>T 6336C>G 6337T>G 6339T>G 6340G>A 6341G>A 6342C>T 6346A>G 6347G>T 6348G>A 6349T>C 6350C>T 6351C>A 6354A>G 6355C>A 6356C>G 6357T>G 6359G>T 6360T>C 6361C>T 6362C>G 6363T>G 6364T>G 6365G>A 6366T>G 6367G>A 6368G>A 6370A>G 6371C>A 6377C>T 6379_6380insGTTCTGACTATTCGC 6381C>T 6382T>C 6387C>T 6388G>A 6389T>G 6390C>A 6391C>A 6392C>A 6393T>C 6394C>T 6395G>C 6396C>A 6397T>G 6398C>A 6400C>G 6401C>G 6402C>A 6409T>G 6410C>G 6413C>G 6415C>T 6416C>A 6417C>T 6419_6424delAGGGAA 6426C>G 6427G>A 6431C>A 6432C>A 6433G>T 6434C>A 6435C>A 6436A>G 6437T>G 6438C>G 6440C>T 6442C>G 6443C>G 6448C>A 6449T>C 6450C>A 6451T>A 6452A>G 6453A>G 6454C>A 6455T>C 6457C>T 6458A>C 6461G>A 6462C>T 6465T>A 6466G>A 6468C>A 6469G>A 6470A>C 6471C>A 6472T>G 6475T>G 6476G>C 6478_6479insTCT 6480A>C 6481A>T 6483C>A 6484T>C 6488A>T 6490G>T 6492T>A 6493G>T 6494A>T 6495G>A 6496A>C 6499A>T 6504T>C 6505T>C 6506G>T 6507T>C 6508_6509insGGA 6509A>T 6511C>A 6512C>G 6514A>C 6515A>C 6516A>C 6521C>G 6522C>A 6527C>A 6528C>A 6531C>T 6532_6533insACTATTAAA 6538C>G 6540A>C 6541C>G 6543G>A 6551G>A 6552A>G 6553T>C 6556T>C 6557G>A 6559G>C 6565G>A 6568C>T 6571C>T 6573T>A 6575A>G 6577C>T 6578T>C 6580A>T 6583T>C 6584G>T 6586T>C 6589C>G 6591A>C 6592C>T 6597G>A 6601C>T 6604T>C 6605G>T 6606A>C 6607G>T 6613C>T 6622T>C 6625G>A 6628C>T 6629A>T 6630T>C 6637C>A 6643T>C 6649A>G 6651C>G 6655A>G 6658C>T 6659T>A 6660C>G 6662T>G 6663C>G 6667A>G 6668G>A 6670G>A 6671G>T 6674G>A 6675C>A 6676C>T 6677T>G 6678A>T 6679C>G 6680T>A 6682C>A 6684C>A 6685C>G 6688C>A 6690T>A 6691_6692insAGA 6696G>A 6697G>A 6700C>T 6701C>A 6702G>C 6703C>A 6709G>A 6710A>T 6716G>A 6717G>A 6718A>T 6724C>T 6730C>T 6739C>T 6742A>T 6746C>A 6748C>A 6751G>C 6752T>A 6753T>C 6754G>C 6763A>G 6765A>T 6769G>T 6773T>C 6774T>C 6775T>A 6776A>T 6781T>C 6784G>A 6787T>C 6790C>T 6793C>T 6796T>C 6799G>C 6802C>T 6803C>G 6804T>A 6806T>G 6809A>T 6811C>T 6815T>C 6816C>G 6817C>A 6818T>A 6821G>T 6822G>C 6823A>T 6826C>G 6827C>A 6828A>G 6832G>A 6839C>G 6841C>A 6844C>T 6845T>G 6846C>G 6847C>T 6848A>T 6850C>T 6851C>G 6853T>C 6856C>G 6865T>A 6868C>T 6870G>A 6871C>T 6877C>A 6878C>T 6880C>A 6889C>T 6890C>G 6892C>T 6900C>T 6901A>G 6907T>C 6910T>C 6913G>A 6918G>A 6922T>C 6925C>T 6928T>C 6929A>G 6931C>T 6932C>A 6933A>T 6940G>A 6941C>A 6943G>T 6944A>G 6946T>C 6949T>C 6952C>G 6953A>G 6955C>G 6958T>C 6967T>C 6971G>A 6975T>C 6976T>A 6977T>G 6979G>C 6980T>C 6982A>T 6983C>G 6985G>T 6987C>A 6988C>A 6995A>T 6998T>A 6999C>G 7000T>A 7001C>T 7003C>T 7004C>A 7005C>A 7006C>T 7007A>C 7010A>C 7012T>A 7022G>C 7024T>C 7025G>A 7027C>A 7030A>C 7033T>G 7045T>A 7046T>A 7048A>G 7051G>C 7054G>A 7057G>A 7060A>G 7062T>C 7063C>G 7064A>G 7066G>C 7068C>T 7069G>T 7072A>C 7073A>G 7078T>A 7225G>T 7228C>A 7231A>G 7234T>C 7237G>A 7240A>G 7243C>G 7244C>T 7246T>A 7249C>T 7250T>C 7253C>T 7255G>A 7270T>A 7273C>G 7274C>T 7276C>A 7281C>T 7282G>A 7286C>T 7291G>A 7294A>G 7297G>A 7303T>C 7306T>C 7309C>T 7310A>G 7315C>T 7324T>A 7327A>C 7328G>A 7330A>C 7331C>A 7333G>A 7344A>G 7345A>C 7348A>G 7351C>T 7353A>G 7359A>G 7360A>G 7361C>T 7363G>A 7366T>G 7368A>G 7369A>G 7370A>C 7372A>T 7374A>G 7375G>A 7376T>A 7377T>G 7378A>G 7381G>A 7382C>A 7384C>A 7385C>G 7388A>G 7389A>C 7390A>T 7391A>G 7392G>A 7396A>G 7397A>G 7398A>G 7399C>G 7404A>T 7420T>C 7422A>G 7423C>G 7426C>T 7433T>A 7435C>G 7438T>C 7447A>T 7450A>T 7451A>G 7453C>T 7454A>C 7456C>G 7457G>A 7459T>G 7469T>G 7472C>G 7477C>G 7480T>C 7486G>A 7489C>T 7491T>C 7492C>A 7493C>G 7495C>T 7501A>T 7505A>T 7507C>A 7510C>T 7515A>G 7519A>T 7523C>G 7524A>C 7525A>C 7528C>T 7529A>G 7531C>T 7533A>G 7534T>A 7537T>A 7538A>C 7540G>A 7541A>G 7543A>G 7550T>G 7551G>T 7552T>C 7553T>C 7555A>G 7557delA 7559T>C 7560C>A 7565C>A 7571A>G 7575A>C 7576_7577insG 7579T>C 7582G>A 7584C>G 7588A>T 7589G>C 7590A>T 7593A>G 7595G>C 7600T>A 7600_7601insG 7603C>A 7606T>G 7607T>A 7608A>C 7609A>C 7611T>C 7613T>A 7615_7616insCTTCCCAGT 7628G>A 7634C>A 7641G>C 7643_7644insG 7645T>A 7646_7647insT
CDS

gag	1	216	38.0%	840	57.2%	192 (95.0%)	104 (51.5%)	4/6/0/0	0
Protein mutations:	D4T (640G>A 641A>C 642T>A) N5V (643A>G 644A>T 645T>G) S6T (646T>A) I9L (655A>C 657C>T) N14D (670A>G 672T>C) R17T (680G>C 681A>T) D18E (684T>A) T21S (691A>T 693A>C) E29Q (715G>C 717A>G) I30V (718A>G 720C>T) K34P (730A>C 731A>C 732A>T) S40A (748T>G) G47D (770G>A 771C>T) P52S (784C>T 786G>A) V79E (866T>A 867T>G) V83L (877G>C 879G>T) V84T (880G>A 881T>C 882A>G) Q90E (898C>G 900G>A) N91D (901A>G) P97K (919C>A 920C>A) A98P (922G>C 924C>A) S99W (926C>G 927C>G) A100L (928G>C 929C>T 930C>A) K101N (933G>T) V102K (934G>A 935T>A 936C>A) A103P (937G>C 939T>A) V104R (940G>A 941T>G 942T>A) V105K (943G>A 944T>A 945C>G) S106P (946T>C 948T>A) D107G (950A>G) T108P (952A>C) R110I (959G>T 960A>C) P111L (962C>T 963A>G) V112A (965T>C) A113L (967G>C 968C>T 969G>T) R115E (973A>G 974G>A) P116K (976C>A 977C>A) S117N (979T>A 980C>A 981A>C) A118K (982G>A 983C>A 984T>A) P119H (986C>A 987T>C) P120S (988C>T 990C>G) R121A (991C>G 992G>C 993A>C) P122E (994C>G 995C>A 996C>A) P123K (997C>A 998C>A 999C>A) I124V (1000A>G) Y125E (1003T>G 1005C>G) A127S (1009G>T 1011A>T) T128P (1012A>C 1014A>T) D129R (1015G>C 1016A>G 1017C>T) D130I (1018G>A 1019A>T) L131Y (1022T>A 1023A>C) L132P (1025T>C) L133E (1027C>G 1028T>A 1029C>G) L134I (1030C>A) S135E (1033T>G 1034C>A 1035T>G) T138P (1042A>C) T138_P139insTW (1044_1045insACTTGG) P140E (1048C>G 1049C>A 1050G>A) Y142Q (1054T>C 1056T>A) A144V (1061C>T 1062G>T) A145P (1063G>C 1065A>C) L146del (1066_1068delCTG) L150Y (1078C>T 1079T>A 1080G>T) A151P (1081G>C 1083C>A) P152A (1084C>G 1086T>A) Q153_A154insG (1089_1090insGGT) I155V (1093A>G 1095C>G) G156R (1096G>A 1098A>G) P157G (1099C>G 1100C>G 1101G>A) G160A (1109G>C) Q161P (1112A>C 1113G>T) M162del (1114_1116delATG) D164G (1121A>G 1122T>A) S165A (1123A>G 1124G>C) S166P (1126A>C 1127G>C 1128C>G) D167V (1130A>T 1131T>G) P168V (1132C>G 1133C>T 1134T>G) A180G (1169C>G) R181A (1171C>G 1172G>C) S182T (1175G>C 1176T>C) A184E (1181C>A 1182A>G) D185_S187del (1183_1191delGACAACTCG) G188R (1192G>C 1194T>G) P189T (1195C>A 1197T>A) S191E (1201T>G 1202C>A 1203C>G) T192I (1205C>T 1206T>C) V193A (1208T>C) A199T (1225G>A) I200Y (1228A>T 1229T>A 1230A>T) A204del (1240_1242delGCC) E205M (1243G>A 1244A>T) N207G (1249A>G 1250A>G 1251T>G) G208_L209insQ (1254_1255insCAA) V210Q (1258G>C 1259T>A 1260C>G)
Codon mutations:	CAA3CAG (639A>G) GAT4ACA (640G>A 641A>C 642T>A) AAT5GTG (643A>G 644A>T 645T>G) TCT6ACT (646T>A) CCT8CCC (654T>C) ATC9CTT (655A>C 657C>T) TCC10AGT (658T>A 659C>G 660C>T) CTC11TTG (661C>T 663C>G) CTA13CTC (669A>C) AAT14GAC (670A>G 672T>C) CAC15CAT (675C>T) AGA17ACT (680G>C 681A>T) GAT18GAA (684T>A) GTG19GTT (687G>T) ACA21TCC (691A>T 693A>C) CAC24CAT (702C>T) CTA26TTG (706C>T 708A>G) TCC27TCA (711C>A) GTG28GTT (714G>T) GAA29CAG (715G>C 717A>G) ATC30GTT (718A>G 720C>T) AAA31AAG (723A>G) AAA34CCT (730A>C 731A>C 732A>T) TCC40GCC (748T>G) TCC41TCT (753C>T) GAG42GAA (756G>A) CCC44CCA (762C>A) GGC47GAT (770G>A 771C>T) GTG48GTT (774G>T) GGG49GGA (777G>A) CCG52TCA (784C>T 786G>A) GAG53GAA (789G>A) GGA54GGG (792A>G) ACT55ACC (795T>C) GGA74.GT (852A>T) CCG76CCT (858G>T) GAC77GAT (861C>T) CAA78CAG (864A>G) GTT79GAG (866T>A 867T>G) CCA80CCC (870A>C) GTG83CTT (877G>C 879G>T) GTA84ACG (880G>A 881T>C 882A>G) CAG86CAA (888G>A) GAC87GAT (891C>T) CTC88TTG (892C>T 894C>G) GCC89GCA (897C>A) CAG90GAA (898C>G 900G>A) AAT91GAT (901A>G) CCC92CCT (906C>T) CCA93CCG (909A>G) GTG96GTT (918G>T) CCA97AAA (919C>A 920C>A) GCC98CCA (922G>C 924C>A) TCC99TGG (926C>G 927C>G) GCC100CTA (928G>C 929C>T 930C>A) AAG101AAT (933G>T) GTC102AAA (934G>A 935T>A 936C>A) GCT103CCA (937G>C 939T>A) GTT104AGA (940G>A 941T>G 942T>A) GTC105AAG (943G>A 944T>A 945C>G) TCT106CCA (946T>C 948T>A) GAT107GGT (950A>G) ACC108CCC (952A>C) AGA110ATC (959G>T 960A>C) CCA111CTG (962C>T 963A>G) GTT112GCT (965T>C) GCG113CTT (967G>C 968C>T 969G>T) GGG114GGA (972G>A) AGG115GAG (973A>G 974G>A) CCA116AAA (976C>A 977C>A) TCA117AAC (979T>A 980C>A 981A>C) GCT118AAA (982G>A 983C>A 984T>A) CCT119CAC (986C>A 987T>C) CCC120TCG (988C>T 990C>G) CGA121GCC (991C>G 992G>C 993A>C) CCC122GAA (994C>G 995C>A 996C>A) CCC123AAA (997C>A 998C>A 999C>A) ATC124GTC (1000A>G) TAC125GAG (1003T>G 1005C>G) CCG126CCC (1008G>C) GCA127TCT (1009G>T 1011A>T) ACA128CCT (1012A>C 1014A>T) GAC129CGT (1015G>C 1016A>G 1017C>T) GAC130ATC (1018G>A 1019A>T) TTA131TAC (1022T>A 1023A>C) CTC132CCC (1025T>C) CTC133GAG (1027C>G 1028T>A 1029C>G) CTC134ATC (1030C>A) TCT135GAG (1033T>G 1034C>A 1035T>G) GAA136GAG (1038A>G) CCC137CCG (1041C>G) ACG138CCG (1042A>C) ACG138_CCC139insACTTGG (1044_1045insACTTGG) CCC139CCG (1047C>G) CCG140GAA (1048C>G 1049C>A 1050G>A) TAT142CAA (1054T>C 1056T>A) CCG143CCT (1059G>T) GCG144GTT (1061C>T 1062G>T) GCA145CCC (1063G>C 1065A>C) CTG146del (1066_1068delCTG) CTG150TAT (1078C>T 1079T>A 1080G>T) GCC151CCA (1081G>C 1083C>A) CCT152GCA (1084C>G 1086T>A) CAG153_GCG154insGGT (1089_1090insGGT) GCG154GCT (1092G>T) ATC155GTG (1093A>G 1095C>G) GGA156AGG (1096G>A 1098A>G) CCG157GGA (1099C>G 1100C>G 1101G>A) CCG158CCC (1104G>C) TCA159TCT (1107A>T) GGC160GCC (1109G>C) CAG161CCT (1112A>C 1113G>T) ATG162del (1114_1116delATG) CCC163CCT (1119C>T) GAT164GGA (1121A>G 1122T>A) AGT165GCT (1123A>G 1124G>C) AGC166CCG (1126A>C 1127G>C 1128C>G) GAT167GTG (1130A>T 1131T>G) CCT168GTG (1132C>G 1133C>T 1134T>G) GGG170GGA (1140G>A) CCA171CCT (1143A>T) GCC172GCT (1146C>T) GCT173GCC (1149T>C) ACC175ACT (1155C>T) AGG176CGG (1156A>C) AGT177AGC (1161T>C) CGC178CGG (1164C>G) CGT179AGA (1165C>A 1167T>A) GCC180GGC (1169C>G) CGC181GCC (1171C>G 1172G>C) AGT182ACC (1175G>C 1176T>C) CCA183CCG (1179A>G) GCA184GAG (1181C>A 1182A>G) GAC185_TCG187del (1183_1191delGACAACTCG) GGT188CGG (1192G>C 1194T>G) CCT189ACA (1195C>A 1197T>A) TCC191GAG (1201T>G 1202C>A 1203C>G) ACT192ATC (1205C>T 1206T>C) GTG193GCG (1208T>C) ATT194ATA (1212T>A) TTG195TTA (1215G>A) CCC196CCG (1218C>G) CTC197CTG (1221C>G) CGA198CGC (1224A>C) GCC199ACC (1225G>A) ATA200TAT (1228A>T 1229T>A 1230A>T) GGA201GGC (1233A>C) CCC202CCT (1236C>T) CCG203CCC (1239G>C) GCC204del (1240_1242delGCC) GAG205ATG (1243G>A 1244A>T) CCC206CCA (1248C>A) AAT207GGG (1249A>G 1250A>G 1251T>G) GGC208_CTG209insCAA (1254_1255insCAA) CTG209TTG (1255C>T) GTC210CAG (1258G>C 1259T>A 1260C>G) CCT211CCC (1263T>C) CTA212CTC (1266A>C) CAA213CAG (1269A>G) CCT216CCC (1278T>C)
pro-pol	394	1166	66.3%	2280	44.9%	748 (92.9%)	371 (46.1%)	32/25/0/0	0
Protein mutations:	P399E (3388C>G 3389C>A 3390A>G) A403K (3400G>A 3401C>A 3402T>A) M406V (3409A>G 3411G>C) K407Q (3412A>C 3414A>G) V410A (3422T>C 3423T>C) P414A (3433C>G) R415K (3437G>A) S436T (3499T>A) S448K (3536G>A 3537C>A) I449G (3538A>G 3539T>G 3540C>G) P450G (3541C>G 3542C>G 3543T>A) I452S (3547A>T 3548T>C 3549T>C) T454A (3553A>G) E455P (3556G>C 3557A>C 3558G>T) Q459K (3568C>A) H463A (3580C>G 3581A>C 3582C>T) L479V (3628C>G 3630C>A) I487V (3652A>G 3654A>G) A491K (3664G>A 3665C>A 3666C>G) T525V (3766A>G 3767C>T 3768C>A) V530I (3781G>A 3783T>C) L535I (3796C>A 3798C>A) L537V (3802C>G) V549I (3838G>A 3840G>A) S554P (3853T>C) S556A (3859A>G 3860G>C 3861C>A) S559N (3869G>A) N583T (3941A>C 3942T>A) S587T (3952T>A 3954G>T) V593A (3971T>C 3972C>T) V602E (3998T>A 3999C>A) S604T (4003T>A 4005G>T) E605D (4008A>T) A606E (4010C>A 4011C>A) T607del (4012_4014delACC) V609_H610insT (4020_4021insACT) R611D (4024A>G 4025G>A 4026G>T) S613H (4030T>C 4031C>A 4032A>T) E614Q (4033G>C) I615L (4036A>C 4038C>A) A617I (4042G>A 4043C>T 4044C>T) T622V (4057A>G 4058C>T 4059T>C) R624K (4063C>A 4064G>A 4065A>G) E627T (4072G>A 4073A>C) Q629I (4078C>A 4079A>T) P632T (4087C>A 4089C>T) G633_V634insE (4092_4093insGAA) P635L (4097C>T) Y638F (4106A>T 4107T>C) F644Y (4124T>A 4125C>T) I645V (4126A>G 4128C>G) T646V (4129A>G 4130C>T) R651M (4145G>T 4146A>G) P655A (4156C>G 4158G>A) I656V (4159A>G 4161C>G) K660T (4172A>C 4173G>C) V663I (4180G>A 4182A>C) V680M (4231G>A 4233A>G) N693S (4270A>T 4271A>C) I709V (4318A>G 4320T>A) K725R (4367A>G 4368A>G) D726E (4371T>A) A735S (4396G>A 4397C>G) I740L (4411A>T 4413C>A) R744K (4424G>A 4425G>A) V746L (4429G>C 4431C>A) R756K (4460G>A 4461G>A) G757A (4463G>C 4464A>C) S758K (4466G>A 4467T>A) N759D (4468A>G 4470C>T) P760L (4472C>T 4473T>C) V761I (4474G>A 4476G>A) A762S (4477G>T 4479C>T) T763R (4481C>G 4482T>A) R766Q (4490G>A) R767M (4493G>T) E770R (4501G>C 4502A>G) A771V (4505C>T) L777Q (4523T>A) S778A (4525T>G 4527G>T) T779V (4528A>G 4529C>T 4530C>T) R780N (4532G>A 4533A>C) V781L (4534G>C 4536G>T) A783P (4540G>C 4542A>T) G784I (4543G>A 4544G>T) T785I (4547C>T 4548T>A) T786E (4549A>G 4550C>A) K787T (4553A>C 4554A>G) Q789K (4558C>A) E790A (4562A>C 4563G>C) I792del (4567_4569delATC) A795_T799del (4576_4590delGCTCAAGAAAAGACC) P801del (4594_4596delCCG) E803Q (4600G>C) L804Y (4603C>T 4604T>A) P806L (4610C>T 4611T>A) D807E (4614C>A) R808D (4615C>G 4616G>A 4617G>C) G809W (4618G>T 4620A>G) K810Q (4621A>C) F812del (4627_4629delTTC) R815K (4636C>A 4637G>A) L816I (4639T>A) H817D (4642C>G 4644T>C) L819F (4650A>C) T820S (4651A>T) H821E (4654C>G 4656C>G) H821_L822insTPEGTCYTS (4656_4657insACTCCGGAGGGGACCTGCTATACCTCA) L822Y (4658T>A 4659A>T) P824K (4663C>A 4664C>A 4665A>G) K826I (4670A>T 4671G>C) L828P (4676T>C) Q829H (4680A>C) L830_V831del (4681_4686delCTAGTG) N832K (4689C>A) R833E (4690C>G 4691G>A 4692T>A) T834G (4693A>G 4694C>G 4695C>G) S835L (4696A>T 4697G>T 4698C>A) L836E (4699C>G 4700T>A 4701C>A) L837Y (4702C>T 4703T>A 4704C>T) I838V (4705A>G) P839Q (4709C>A 4710G>A) N840Q (4711A>C 4713C>G) L841I (4714C>A 4716C>A) Q842H (4719A>T) S843R (4720T>C 4721C>G) A844L (4723G>C 4724C>T 4725A>C) V845T (4726G>A 4727T>C 4728T>C) R846H (4730G>A) E847L (4732G>C 4733A>T) V848G (4736T>G 4737C>A) S850K (4742G>A 4743T>A) Q851H (4746G>C) C852L (4747T>C 4748G>T 4749T>G) A854Q (4753G>C 4754C>A 4755T>G) C855L (4757G>T 4758T>G) A856V (4760C>T) M857R (4763T>G 4764G>A) N859S (4768A>T 4769A>C 4770T>C) A860P (4771G>C 4773G>T) V861Y (4774G>T 4775T>A 4776C>T) T862H (4777A>C 4778C>A 4779C>T) T863V (4780A>G 4781C>T 4782C>T) Y864L (4783T>C 4784A>T 4785C>G) E866L (4789G>C 4790A>T 4791G>A) T867P (4792A>C 4794C>A) K869V (4798A>G 4799A>T 4800A>G) R870A (4801A>G 4802G>C 4803G>T) Q871D (4804C>G 4806A>C) R872S (4807C>T 4808G>C 4809A>G) G873V (4811G>T 4812A>G) D874V (4814A>T 4815T>C) R875K (4816C>A 4817G>A) P876H (4820C>A 4821C>T) G877C (4822G>T 4824C>T) Y879P (4828T>C 4829A>C) W880C (4833G>C) E881Q (4834G>C) V882L (4837G>C 4839A>G) D883V (4841A>T 4842C>T) F884N (4843T>A 4844T>A 4845C>T) T885A (4846A>G 4848A>T) E886_I887del (4849_4854delGAAATA) K888N (4857G>T) G890S (4861G>T 4862G>C 4863T>C) Y892I (4867T>A 4868A>T 4869T>A) G893P (4870G>C 4871G>C 4872A>T) N894P (4873A>C 4874A>C 4875C>A) K895G (4876A>G 4877A>G 4878G>A) Y896K (4879T>A 4881T>G) L897R (4882C>A 4883T>G 4884G>A) V899R (4888G>A 4889T>G 4890A>G) F900G (4891T>G 4892T>G 4893C>A) I901S (4895T>G 4896A>C) D902H (4897G>C 4899T>C) T903P (4900A>C 4902T>A) F904G (4903T>G 4904T>G) S905A (4906T>G 4908C>T) G906H (4909G>C 4910G>A 4911A>C) V908E (4916T>A) E909V (4919A>T 4920A>G) A910D (4922C>A 4923T>C) P912del (4927_4929delCCT) K914E (4933A>G 4935A>G) T915V (4936A>G 4937C>T 4938T>A) E916K (4939G>A 4941A>G) T917P (4942A>C) L919K (4948C>A 4949T>A) I920Y (4951A>T 4952T>A) V921G (4955T>G 4956C>A) C922N (4957T>A 4958G>A 4959T>C) K924Y (4963A>T 4965A>T) I925L (4966A>C) E927V (4973A>T 4974A>T) E928F (4975G>T 4976A>T 4977A>T) I929V (4978A>G 4980T>A) L930D (4981C>G 4982T>A 4983A>C) P931T (4984C>A) R932F (4987C>T 4988G>T 4989C>T) F933S (4991T>C 4992C>A) I935W (4996A>T 4997T>G 4998C>G) P936V (4999C>G 5000C>T 5001T>A) K937E (5002A>G) V938A (5006T>C 5007A>T) L939Y (5008C>T 5009T>A 5010C>T) G940P (5011G>C 5012G>C 5013G>T) S941T (5014T>A 5016A>T) D942K (5017G>A 5019C>G) N943K (5022T>A) G944E (5024G>A 5025C>G) P945T (5026C>A 5028G>T) P945_A946insS (5028_5029insTCA) A946T (5029G>A) F947L (5034T>G) Q950K (5041C>A 5043G>A) Q950_V951insK (5043_5044insAAA) V951I (5044G>A) S952L (5047A>C 5048G>T 5049T>G) Q953E (5050C>G) G954E (5054G>A) L955I (5056C>A 5058G>T) A956F (5059G>T 5060C>T 5061C>T) T957P (5062A>C 5064T>G) Q958R (5065C>A 5066A>G) L959F (5068C>T 5070G>T) N962P (5077A>C 5078A>C) W963K (5080T>A 5081G>A) K964V (5083A>G 5084A>T 5085G>A) L965I (5086T>A 5088A>C) H966G (5089C>G 5090A>G 5091T>G) C967S (5093G>C 5094T>A) A968D (5096C>A 5097G>C) Y969N (5098T>A) R970G (5101A>G 5103A>T) Q972A (5107C>G 5108A>C 5109G>T) S973F (5110A>T 5111G>T 5112C>T) S974V (5113T>G 5114C>T 5115A>T) G975A (5117G>C 5118T>C) V977_E978insS (5124_5125insAGT) E978Q (5125G>C 5127A>G) R979G (5128A>G) M980L (5131A>C) N981A (5134A>G 5135A>C) R982K (5138G>A 5139A>G) T983I (5141C>T) I984L (5143A>T 5145T>G) I984_K985insGIDW (5145_5146insGGGATTGATTGG) E986L (5149G>C 5150A>T) T987H (5152A>C 5153C>A 5154C>T) L988C (5156T>G 5157G>T) T989A (5158A>G 5160C>A) K990Y (5161A>T 5163A>C) L991R (5164T>A 5165T>G) A992P (5167G>C) L993Q (5170T>C 5171T>A) E994S (5173G>A 5174A>G 5175G>C) T995S (5176A>T 5178C>A) G997Q (5182G>C 5183G>A 5184A>G) K998V (5185A>G 5186A>T) D999E (5190C>G) W1000R (5191T>A) V1001M (5194G>A) T1002N (5198C>A 5199C>T) L1003R (5200C>A 5201T>G 5202C>A) L1004T (5203C>A 5204T>C 5205T>C) P1005I (5206C>A 5207C>T 5208C>T) L1006K (5209T>A 5210T>A) A1007E (5213C>A 5214G>A) L1008T (5215C>A 5216T>C 5217G>C) R1010T (5222G>C 5223G>C) A1011K (5224G>A 5225C>A 5226C>A) R1012L (5227A>T 5228G>T) N1013T (5231A>C 5232T>C) P1015_G1016del (5236_5241delCCTGGC) R1017E (5242C>G 5243G>A) F1018T (5245T>A 5246T>C) L1020I (5251T>A 5253A>T) T1021N (5255C>A) P1022D (5257C>G 5258C>A) Y1023W (5261A>G 5262T>G) E1024M (5263G>A 5264A>T 5265A>G) I1025A (5266A>G 5267T>C) Y1027L (5272T>C 5273A>T 5274T>G) G1028_P1030del (5275_5283delGGAGGACCA) P1032F (5287C>T 5288C>T 5289C>T) I1033V (5290A>G 5292A>G) L1034_E1035insFRVRN (5295_5296insTTTAGGGTGAGGAAC) E1035T (5296G>A 5297A>C 5298G>C) S1036P (5299T>C) E1038Q (5305G>C 5307A>G) T1039F (5308A>T 5309C>T) L1040G (5311T>G 5312T>G) G1041L (5314G>C 5315G>T 5316T>G) P1042T (5317C>A) D1043P (5320G>C 5321A>C 5322T>C) D1044Y (5323G>T) R1045E (5326A>G 5327G>A) F1046L (5331T>G) P1048Y (5335C>T 5336C>A 5337T>C) V1049G (5339T>G 5340C>G) L1050G (5341T>G 5342T>G) F1051P (5344T>C 5345T>C 5346T>C) T1052P (5347A>C 5349T>C) H1053P (5351A>C 5352C>G) K1055_A1056del (5356_5361delAAGGCT) L1057A (5362T>G 5363T>C) V1060A (5372T>C 5373A>C) R1061F (5374A>T 5375G>T 5376G>T) T1062A (5377A>G 5379C>A) Q1063H (5382A>T) I1064S (5384T>G 5385C>T) W1065A (5386T>G 5387G>C 5388G>T) Q1067V (5392C>G 5393A>T) I1068L (5395A>C 5397C>G) K1069_E1070del (5398_5403delAAAGAG) V1071L (5404G>C 5406G>T) Y1072S (5408A>C 5409T>C) K1073Q (5410A>C) G1075L (5416G>T 5417G>T 5418T>G) T1076F (5419A>T 5420C>T) V1077S (5422G>T 5423T>C 5424A>T) T1078R (5426C>G 5427A>G) I1079L (5428A>C) P1080K (5431C>A 5432C>A 5433T>G) H1081A (5434C>G 5435A>C 5436C>G) P1082L (5438C>T 5439G>C) F1083E (5440T>G 5441T>A 5442C>G) Q1084W (5443C>T 5444A>G) G1086R (5449G>A) D1087Q (5452G>C 5454T>G) Q1088R (5456A>G) V1089A (5459T>C) L1090W (5461C>T 5462T>G 5463T>G) V1091K (5464G>A 5465T>A 5466C>G) R1092Q (5467A>C 5468G>A 5469A>G) R1093L (5471G>T) H1094R (5474A>G 5475T>G) R1095E (5476C>G 5477G>A 5478A>G) P1096A (5479C>G) S1097Y (5482A>T 5483G>A) S1098_L1099insGGDLQ (5487_5488insGGAGGAGACTTGCAA) L1099V (5488C>G) E1100P (5491G>C 5492A>C 5493G>A) P1101H (5495C>A) W1103F (5501G>T 5502G>C) K1104Q (5503A>C) G1105V (5507G>T 5508C>T) P1106G (5509C>G 5510C>G) Y1107D (5512T>G 5514C>T) L1108S (5515C>T 5516T>C 5517G>A) L1110Y (5522T>A 5523G>T) L1111V (5524C>G 5526G>T) T1112R (5528C>G 5529T>A) T1113R (5530A>C 5531C>G) P1114H (5534C>A 5535G>C) T1115R (5536A>C 5537C>G 5538C>T) V1117G (5543T>G) K1118N (5547A>C) V1119L (5548G>C) D1120E (5553T>G) G1121_I1122del (5554_5559delGGTATT) A1123T (5560G>A) A1124R (5563G>C 5564C>G 5565C>G) V1126K (5569G>A 5570T>A 5571C>G) H1127G (5572C>G 5573A>G 5574T>A) A1128P (5575G>C) S1129Y (5579C>A) H1130L (5582A>T) L1131V (5584C>G 5586C>A) K1132L (5587A>C 5588A>T 5589A>T) P1133L (5590C>T 5591C>T 5592T>G) A1134T (5593G>A 5595A>C) P1135T (5596C>A) S1137T (5602T>A) P1139V (5608C>G 5609C>T 5610A>G) D1140K (5611G>A 5613T>A) E1141V (5615A>T 5616G>C) E1141_S1142insEGIP (5617T>G 5617_5618insAAGGAATCCCCA) S1142T (5617_5618insAAGGAATCCCCA) E1144I (5623G>A 5624A>T 5625G>C) L1145H (5627T>A 5628G>T) E1146A (5630A>C) K1147S (5632A>T 5633A>C 5634G>C) T1148H (5635A>C 5636C>A 5637T>C) D1149V (5639A>T) H1150K (5641C>A 5643T>G) L1152A (5647C>G 5648T>C 5649T>G) K1153P (5650A>C 5651A>C 5652G>A) L1154P (5654T>C 5655G>T) R1155P (5657G>C 5658T>C) I1156D (5659A>G 5660T>A) R1157S (5662C>T 5663G>C) R1158G (5665C>G) R1159W (5668C>T) R1160K (5671C>A 5672G>A 5673G>A) D1161A (5675A>C) S1163K (5680T>A 5681C>A 5682T>G) A1164T (5683G>A 5685A>T) K1165E (5686A>G) *1166N (5689T>A 5691A>T)
Codon mutations:	CTA397CTG (3384A>G) ACC398ACG (3387C>G) CCA399GAG (3388C>G 3389C>A 3390A>G) GCC400GCA (3393C>A) CGA401CGG (3396A>G) GCT403AAA (3400G>A 3401C>A 3402T>A) GTT405GTA (3408T>A) ATG406GTC (3409A>G 3411G>C) AAA407CAG (3412A>C 3414A>G) ATC408ATA (3417C>A) CCT409CCG (3420T>G) GTT410GCC (3422T>C 3423T>C) CCT411CCA (3426T>A) ACG412ACC (3429G>C) ACC413ACA (3432C>A) CCC414GCC (3433C>G) AGA415AAA (3437G>A) CAG416CAA (3441G>A) GTC417GTG (3444C>G) CGT418AGA (3445C>A 3447T>A) GAA419GAG (3450A>G) CTA421TTG (3454C>T 3456A>G) GGC422GGG (3459C>G) ACT423ACA (3462T>A) GCC424GCT (3465C>T) TTC426TTT (3471C>T) AGG428AGA (3477G>A) CTC429CTG (3480C>G) CCT432CCG (3489T>G) GCT435GCG (3498T>G) TCC436ACC (3499T>A) CTG437TTA (3502C>T 3504G>A) GCT438GCA (3507T>A) GCA439GCC (3510A>C) CCC440CCA (3513C>A) TTG441CTC (3514T>C 3516G>C) CCC443CCG (3522C>G) ACA445ACC (3528A>C) GAG447GAA (3534G>A) AGC448AAA (3536G>A 3537C>A) ATC449GGG (3538A>G 3539T>G 3540C>G) CCT450GGA (3541C>G 3542C>G 3543T>A) TTT451TTC (3546T>C) ATT452TCC (3547A>T 3548T>C 3549T>C) ACT454GCT (3553A>G) GAG455CCT (3556G>C 3557A>C 3558G>T) GAA456GAG (3561A>G) CAT457CAC (3564T>C) CAG459AAG (3568C>A) GCT460GCA (3573T>A) GAC462GAT (3579C>T) CAC463GCT (3580C>G 3581A>C 3582C>T) ATA464ATC (3585A>C) AAA466AAG (3591A>G) TTG468CTG (3595T>C) TCA470AGC (3601T>A 3602C>G 3603A>C) GCC471GCA (3606C>A) GCA473GCT (3612A>T) TTG474CTG (3613T>C) CCA477CCT (3624A>T) CTC479GTA (3628C>G 3630C>A) ACC480ACT (3633C>T) AAG481AAA (3636G>A) CCA482CCC (3639A>C) TTC483TTT (3642C>T) ACT484ACC (3645T>C) CTA485CTT (3648A>T) ATA487GTG (3652A>G 3654A>G) AGA490CGT (3661A>C 3663A>T) GCC491AAG (3664G>A 3665C>A 3666C>G) GGC492GGA (3669C>A) GTG493GTA (3672G>A) CGG495CGA (3678G>A) GTG497GTT (3684G>T) CTC498TTA (3685C>T 3687C>A) ACT499ACC (3690T>C) CAG500CAA (3693G>A) ACT501ACC (3696T>C) TTA502CTA (3697T>C) CCC504CCA (3705C>A) CGG506AGG (3709C>A) CGG507AGA (3712C>A 3714G>A) CCA508CCT (3717A>T) GTA509GTT (3720A>T) GCA510GCC (3723A>C) TAT511TAC (3726T>C) CTA512CTG (3729A>G) AAA514AAG (3735A>G) AAA515AAG (3738A>G) CTG516CTT (3741G>T) CCG518CCT (3747G>T) GTG519GTA (3750G>A) AGC521AGT (3756C>T) GGG522GGT (3759G>T) CCA524CCC (3765A>C) ACC525GTA (3766A>G 3767C>T 3768C>A) TGC526TGT (3771C>T) AAA528AAG (3777A>G) GCG529GCT (3780G>T) GTT530ATC (3781G>A 3783T>C) GCA532GCT (3789A>T) GTA533GTG (3792A>G) GCA534GCC (3795A>C) CTC535ATA (3796C>A 3798C>A) CTT536CTG (3801T>G) CTC537GTC (3802C>G) AAA538AAG (3807A>G) GAT541GAC (3816T>C) AAG542AAA (3819G>A) TTA543TTG (3822A>G) ACC544ACT (3825C>T) CAA547CAG (3834A>G) GTG549ATA (3838G>A 3840G>A) GTG551GTA (3846G>A) ATT552ATA (3849T>A) GCT553GCC (3852T>C) TCC554CCC (3853T>C) AGC556GCA (3859A>G 3860G>C 3861C>A) CTC557TTG (3862C>T 3864C>G) GAA558GAG (3867A>G) AGC559AAC (3869G>A) GTG561GTT (3876G>T) CAA563CAG (3882A>G) CCC565CCA (3888C>A) CGG567CGA (3894G>A) AAT571AAC (3906T>C) AGA573CGC (3910A>C 3912A>C) ACT575ACC (3918T>C) CAT576CAC (3921T>C) TAC577TAT (3924C>T) CAG578CAA (3927G>A) CTG581CTT (3936G>T) TTA582CTC (3937T>C 3939A>C) AAT583ACA (3941A>C 3942T>A) GAA584GAG (3945A>G) GTA586GTC (3951A>C) TCG587ACT (3952T>A 3954G>T) TTT588TTC (3957T>C) GCG589GCT (3960G>T) CCC590CCA (3963C>A) CCT591CCA (3966T>A) GCT592GCC (3969T>C) GTC593GCT (3971T>C 3972C>T) CTA594CTC (3975A>C) CCA596CCT (3981A>T) GCT597GCC (3984T>C) ACC598ACT (3987C>T) CTA599CTT (3990A>T) CTT600CTG (3993T>G) CCA601CCT (3996A>T) GTC602GAA (3998T>A 3999C>A) TCG604ACT (4003T>A 4005G>T) GAA605GAT (4008A>T) GCC606GAA (4010C>A 4011C>A) ACC607del (4012_4014delACC) GTG609_CAC610insACT (4020_4021insACT) CAC610CAT (4023C>T) AGG611GAT (4024A>G 4025G>A 4026G>T) TCA613CAT (4030T>C 4031C>A 4032A>T) GAA614CAA (4033G>C) ATC615CTA (4036A>C 4038C>A) CTC616TTG (4039C>T 4041C>G) GCC617ATT (4042G>A 4043C>T 4044C>T) GAA618GAG (4047A>G) GAA619GAG (4050A>G) GGA621GGG (4056A>G) ACT622GTC (4057A>G 4058C>T 4059T>C) CGA623CGC (4062A>C) CGA624AAG (4063C>A 4064G>A 4065A>G) CTA626CTT (4071A>T) GAA627ACA (4072G>A 4073A>C) CAA629ATA (4078C>A 4079A>T) CCA630CCG (4083A>G) TTG631CTG (4084T>C) CCC632ACT (4087C>A 4089C>T) GGG633GGA (4092G>A) GGG633_GTG634insGAA (4092_4093insGAA) CCA635CTA (4097C>T) TAT638TTC (4106A>T 4107T>C) ACA639ACT (4110A>T) GGT641GGA (4116T>A) AGT643AGC (4122T>C) TTC644TAT (4124T>A 4125C>T) ATC645GTG (4126A>G 4128C>G) ACG646GTG (4129A>G 4130C>T) AAA649AAG (4140A>G) CGG650AGG (4141C>A) AGA651ATG (4145G>T 4146A>G) GCA652GCT (4149A>T) GCC654GCG (4155C>G) CCG655GCA (4156C>G 4158G>A) ATC656GTG (4159A>G 4161C>G) GTA657GTG (4164A>G) GAT658GAC (4167T>C) GGC659GGG (4170C>G) AAG660ACC (4172A>C 4173G>C) CGG661CGC (4176G>C) GTA663ATC (4180G>A 4182A>C) GCT665GCC (4188T>C) CCA669CCG (4200A>G) GGT671GGA (4206T>A) ACG672ACT (4209G>T) GCC674GCG (4215C>G) CAG675CAA (4218G>A) GAA678GAG (4227A>G) CTA679CTC (4230A>C) GTA680ATG (4231G>A 4233A>G) TTG682CTC (4237T>C 4239G>C) CAG684CAA (4245G>A) GCA685GCT (4248A>T) TTA686TTG (4251A>G) CGC687CGG (4254C>G) GGA691GGG (4266A>G) AAC693TCC (4270A>T 4271A>C) ATC694ATA (4275C>A) ATC696ATT (4281C>T) TAC697TAT (4284C>T) GCT703GCC (4302T>C) GCC705GCG (4308C>G) GCT707GCA (4314T>A) CAT708CAC (4317T>C) ATT709GTA (4318A>G 4320T>A) CAT710CAC (4323T>C) GCA712GCC (4329A>C) ATA713ATC (4332A>C) AAG715AAA (4338G>A) CAG716CAA (4341G>A) CTG719TTG (4348C>T) CTC720CTT (4353C>T) ACT721ACC (4356T>C) TCT722TCA (4359T>A) GCT723GCA (4362T>A) GGA724GGG (4365A>G) AAA725AGG (4367A>G 4368A>G) GAT726GAA (4371T>A) ATC727ATA (4374C>A) AAA728AAG (4377A>G) TTG734CTA (4393T>C 4395G>A) GCC735AGC (4396G>A 4397C>G) CTG736CTA (4401G>A) CTA737TTA (4402C>T) GAG738GAA (4407G>A) ATC740TTA (4411A>T 4413C>A) CTC742TTG (4417C>T 4419C>G) CCT743CCA (4422T>A) AGG744AAA (4424G>A 4425G>A) CGG745AGG (4426C>A) GTC746CTA (4429G>C 4431C>A) GCC747GCT (4434C>T) ATC749ATA (4440C>A) GGC753GGA (4452C>A) CAC754CAT (4455C>T) AGG756AAA (4460G>A 4461G>A) GGA757GCC (4463G>C 4464A>C) AGT758AAA (4466G>A 4467T>A) AAC759GAT (4468A>G 4470C>T) CCT760CTC (4472C>T 4473T>C) GTG761ATA (4474G>A 4476G>A) GCC762TCT (4477G>T 4479C>T) ACT763AGA (4481C>G 4482T>A) CGG766CAG (4490G>A) AGG767ATG (4493G>T) GCC768GCT (4497C>T) GAG770CGG (4501G>C 4502A>G) GCT771GTT (4505C>T) GCA772GCC (4509A>C) CAA774CAG (4515A>G) GCC775GCA (4518C>A) CTG777CAG (4523T>A) TCG778GCT (4525T>G 4527G>T) ACC779GTT (4528A>G 4529C>T 4530C>T) AGA780AAC (4532G>A 4533A>C) GTG781CTT (4534G>C 4536G>T) GCA783CCT (4540G>C 4542A>T) GGA784ATA (4543G>A 4544G>T) ACT785ATA (4547C>T 4548T>A) ACA786GAA (4549A>G 4550C>A) AAA787ACG (4553A>C 4554A>G) CCT788CCC (4557T>C) CAA789AAA (4558C>A) GAG790GCC (4562A>C 4563G>C) ATC792del (4567_4569delATC) GAG793GAA (4572G>A) GCT795_ACC799del (4576_4590delGCTCAAGAAAAGACC) AGG800AGA (4593G>A) CCG801del (4594_4596delCCG) AGG802CGA (4597A>C 4599G>A) GAG803CAG (4600G>C) CTC804TAC (4603C>T 4604T>A) CCT806CTA (4610C>T 4611T>A) GAC807GAA (4614C>A) CGG808GAC (4615C>G 4616G>A 4617G>C) GGA809TGG (4618G>T 4620A>G) AAA810CAA (4621A>C) GAA811GAG (4626A>G) TTC812del (4627_4629delTTC) ATT813ATA (4632T>A) AAG814AAA (4635G>A) CGG815AAG (4636C>A 4637G>A) TTA816ATA (4639T>A) CAT817GAC (4642C>G 4644T>C) TTA819TTC (4650A>C) ACT820TCT (4651A>T) CAC821GAG (4654C>G 4656C>G) CAC821_TTA822insACTCCGGAGGGGACCTGCTATACCTCA (4656_4657insACTCCGGAGGGGACCTGCTATACCTCA) TTA822TAT (4658T>A 4659A>T) GGA823GGG (4662A>G) CCA824AAG (4663C>A 4664C>A 4665A>G) AAG826ATC (4670A>T 4671G>C) CTT827CTG (4674T>G) CTC828CCC (4676T>C) CAA829CAC (4680A>C) CTA830_GTG831del (4681_4686delCTAGTG) AAC832AAA (4689C>A) CGT833GAA (4690C>G 4691G>A 4692T>A) ACC834GGG (4693A>G 4694C>G 4695C>G) AGC835TTA (4696A>T 4697G>T 4698C>A) CTC836GAA (4699C>G 4700T>A 4701C>A) CTC837TAT (4702C>T 4703T>A 4704C>T) ATC838GTC (4705A>G) CCG839CAA (4709C>A 4710G>A) AAC840CAG (4711A>C 4713C>G) CTC841ATA (4714C>A 4716C>A) CAA842CAT (4719A>T) TCT843CGT (4720T>C 4721C>G) GCA844CTC (4723G>C 4724C>T 4725A>C) GTT845ACC (4726G>A 4727T>C 4728T>C) CGC846CAC (4730G>A) GAA847CTA (4732G>C 4733A>T) GTC848GGA (4736T>G 4737C>A) ACC849ACT (4740C>T) AGT850AAA (4742G>A 4743T>A) CAG851CAC (4746G>C) TGT852CTG (4747T>C 4748G>T 4749T>G) GCT854CAG (4753G>C 4754C>A 4755T>G) TGT855TTG (4757G>T 4758T>G) GCC856GTC (4760C>T) ATG857AGA (4763T>G 4764G>A) ACT858ACA (4767T>A) AAT859TCC (4768A>T 4769A>C 4770T>C) GCG860CCT (4771G>C 4773G>T) GTC861TAT (4774G>T 4775T>A 4776C>T) ACC862CAT (4777A>C 4778C>A 4779C>T) ACC863GTT (4780A>G 4781C>T 4782C>T) TAC864CTG (4783T>C 4784A>T 4785C>G) AGA865AGG (4788A>G) GAG866CTA (4789G>C 4790A>T 4791G>A) ACC867CCA (4792A>C 4794C>A) AAA869GTG (4798A>G 4799A>T 4800A>G) AGG870GCT (4801A>G 4802G>C 4803G>T) CAA871GAC (4804C>G 4806A>C) CGA872TCG (4807C>T 4808G>C 4809A>G) GGA873GTG (4811G>T 4812A>G) GAT874GTC (4814A>T 4815T>C) CGA875AAA (4816C>A 4817G>A) CCC876CAT (4820C>A 4821C>T) GGC877TGT (4822G>T 4824C>T) TAC879CCC (4828T>C 4829A>C) TGG880TGC (4833G>C) GAG881CAG (4834G>C) GTA882CTG (4837G>C 4839A>G) GAC883GTT (4841A>T 4842C>T) TTC884AAT (4843T>A 4844T>A 4845C>T) ACA885GCT (4846A>G 4848A>T) GAA886_ATA887del (4849_4854delGAAATA) AAG888AAT (4857G>T) GGT890TCC (4861G>T 4862G>C 4863T>C) CGG891AGA (4864C>A 4866G>A) TAT892ATA (4867T>A 4868A>T 4869T>A) GGA893CCT (4870G>C 4871G>C 4872A>T) AAC894CCA (4873A>C 4874A>C 4875C>A) AAG895GGA (4876A>G 4877A>G 4878G>A) TAT896AAG (4879T>A 4881T>G) CTG897AGA (4882C>A 4883T>G 4884G>A) TTA898CTA (4885T>C) GTA899AGG (4888G>A 4889T>G 4890A>G) TTC900GGA (4891T>G 4892T>G 4893C>A) ATA901AGC (4895T>G 4896A>C) GAT902CAC (4897G>C 4899T>C) ACT903CCA (4900A>C 4902T>A) TTC904GGC (4903T>G 4904T>G) TCC905GCT (4906T>G 4908C>T) GGA906CAC (4909G>C 4910G>A 4911A>C) GTA908GAA (4916T>A) GAA909GTG (4919A>T 4920A>G) GCT910GAC (4922C>A 4923T>C) TTT911TTC (4926T>C) CCT912del (4927_4929delCCT) ACC913ACT (4932C>T) AAA914GAG (4933A>G 4935A>G) ACT915GTA (4936A>G 4937C>T 4938T>A) GAA916AAG (4939G>A 4941A>G) ACG917CCG (4942A>C) GCC918GCT (4947C>T) CTA919AAA (4948C>A 4949T>A) ATC920TAC (4951A>T 4952T>A) GTC921GGA (4955T>G 4956C>A) TGT922AAC (4957T>A 4958G>A 4959T>C) AAA924TAT (4963A>T 4965A>T) ATA925CTA (4966A>C) TTA926TTG (4971A>G) GAA927GTT (4973A>T 4974A>T) GAA928TTT (4975G>T 4976A>T 4977A>T) ATT929GTA (4978A>G 4980T>A) CTA930GAC (4981C>G 4982T>A 4983A>C) CCC931ACC (4984C>A) CGC932TTT (4987C>T 4988G>T 4989C>T) TTC933TCA (4991T>C 4992C>A) GGG934GGA (4995G>A) ATC935TGG (4996A>T 4997T>G 4998C>G) CCT936GTA (4999C>G 5000C>T 5001T>A) AAG937GAG (5002A>G) GTA938GCT (5006T>C 5007A>T) CTC939TAT (5008C>T 5009T>A 5010C>T) GGG940CCT (5011G>C 5012G>C 5013G>T) TCA941ACT (5014T>A 5016A>T) GAC942AAG (5017G>A 5019C>G) AAT943AAA (5022T>A) GGC944GAG (5024G>A 5025C>G) CCG945ACT (5026C>A 5028G>T) CCG945_GCC946insTCA (5028_5029insTCA) GCC946ACC (5029G>A) TTT947TTG (5034T>G) GTT948GTG (5037T>G) CAG950AAA (5041C>A 5043G>A) CAG950_GTA951insAAA (5043_5044insAAA) GTA951ATA (5044G>A) AGT952CTG (5047A>C 5048G>T 5049T>G) CAG953GAG (5050C>G) GGA954GAA (5054G>A) CTG955ATT (5056C>A 5058G>T) GCC956TTT (5059G>T 5060C>T 5061C>T) ACT957CCG (5062A>C 5064T>G) CAA958AGA (5065C>A 5066A>G) CTG959TTT (5068C>T 5070G>T) GGG960GGA (5073G>A) AAT962CCT (5077A>C 5078A>C) TGG963AAG (5080T>A 5081G>A) AAG964GTA (5083A>G 5084A>T 5085G>A) TTA965ATC (5086T>A 5088A>C) CAT966GGG (5089C>G 5090A>G 5091T>G) TGT967TCA (5093G>C 5094T>A) GCG968GAC (5096C>A 5097G>C) TAT969AAT (5098T>A) AGA970GGT (5101A>G 5103A>T) CCC971CCA (5106C>A) CAG972GCT (5107C>G 5108A>C 5109G>T) AGC973TTT (5110A>T 5111G>T 5112C>T) TCA974GTT (5113T>G 5114C>T 5115A>T) GGT975GCC (5117G>C 5118T>C) GTA977_GAA978insAGT (5124_5125insAGT) GAA978CAG (5125G>C 5127A>G) AGA979GGA (5128A>G) ATG980CTG (5131A>C) AAC981GCC (5134A>G 5135A>C) AGA982AAG (5138G>A 5139A>G) ACA983ATA (5141C>T) ATT984TTG (5143A>T 5145T>G) ATT984_AAA985insGGGATTGATTGG (5145_5146insGGGATTGATTGG) GAG986CTG (5149G>C 5150A>T) ACC987CAT (5152A>C 5153C>A 5154C>T) TTG988TGT (5156T>G 5157G>T) ACC989GCA (5158A>G 5160C>A) AAA990TAC (5161A>T 5163A>C) TTA991AGA (5164T>A 5165T>G) GCC992CCC (5167G>C) TTA993CAA (5170T>C 5171T>A) GAG994AGC (5173G>A 5174A>G 5175G>C) ACC995TCA (5176A>T 5178C>A) GGT996GGA (5181T>A) GGA997CAG (5182G>C 5183G>A 5184A>G) AAA998GTA (5185A>G 5186A>T) GAC999GAG (5190C>G) TGG1000AGG (5191T>A) GTG1001ATG (5194G>A) ACC1002AAT (5198C>A 5199C>T) CTC1003AGA (5200C>A 5201T>G 5202C>A) CTT1004ACC (5203C>A 5204T>C 5205T>C) CCC1005ATT (5206C>A 5207C>T 5208C>T) TTA1006AAA (5209T>A 5210T>A) GCG1007GAA (5213C>A 5214G>A) CTG1008ACC (5215C>A 5216T>C 5217G>C) AGG1010ACC (5222G>C 5223G>C) GCC1011AAA (5224G>A 5225C>A 5226C>A) AGG1012TTG (5227A>T 5228G>T) AAT1013ACC (5231A>C 5232T>C) ACC1014ACA (5235C>A) CCT1015_GGC1016del (5236_5241delCCTGGC) CGG1017GAG (5242C>G 5243G>A) TTT1018ACT (5245T>A 5246T>C) GGT1019GGC (5250T>C) TTA1020ATT (5251T>A 5253A>T) ACT1021AAT (5255C>A) CCT1022GAT (5257C>G 5258C>A) TAT1023TGG (5261A>G 5262T>G) GAA1024ATG (5263G>A 5264A>T 5265A>G) ATT1025GCT (5266A>G 5267T>C) TAT1027CTG (5272T>C 5273A>T 5274T>G) GGA1028_CCA1030del (5275_5283delGGAGGACCA) CCC1032TTT (5287C>T 5288C>T 5289C>T) ATA1033GTG (5290A>G 5292A>G) CTT1034_GAG1035insTTTAGGGTGAGGAAC (5295_5296insTTTAGGGTGAGGAAC) GAG1035ACC (5296G>A 5297A>C 5298G>C) TCT1036CCT (5299T>C) GAA1038CAG (5305G>C 5307A>G) ACT1039TTT (5308A>T 5309C>T) TTG1040GGG (5311T>G 5312T>G) GGT1041CTG (5314G>C 5315G>T 5316T>G) CCC1042ACC (5317C>A) GAT1043CCC (5320G>C 5321A>C 5322T>C) GAT1044TAT (5323G>T) AGA1045GAA (5326A>G 5327G>A) TTT1046TTG (5331T>G) CCT1048TAC (5335C>T 5336C>A 5337T>C) GTC1049GGG (5339T>G 5340C>G) TTA1050GGA (5341T>G 5342T>G) TTT1051CCC (5344T>C 5345T>C 5346T>C) ACT1052CCC (5347A>C 5349T>C) CAC1053CCG (5351A>C 5352C>G) TTA1054TTG (5355A>G) AAG1055_GCT1056del (5356_5361delAAGGCT) TTA1057GCA (5362T>G 5363T>C) GTA1060GCC (5372T>C 5373A>C) AGG1061TTT (5374A>T 5375G>T 5376G>T) ACC1062GCA (5377A>G 5379C>A) CAA1063CAT (5382A>T) ATC1064AGT (5384T>G 5385C>T) TGG1065GCT (5386T>G 5387G>C 5388G>T) GAC1066GAT (5391C>T) CAG1067GTG (5392C>G 5393A>T) ATC1068CTG (5395A>C 5397C>G) AAA1069_GAG1070del (5398_5403delAAAGAG) GTG1071CTT (5404G>C 5406G>T) TAT1072TCC (5408A>C 5409T>C) AAG1073CAG (5410A>C) GGT1075TTG (5416G>T 5417G>T 5418T>G) ACC1076TTC (5419A>T 5420C>T) GTA1077TCT (5422G>T 5423T>C 5424A>T) ACA1078AGG (5426C>G 5427A>G) ATC1079CTC (5428A>C) CCT1080AAG (5431C>A 5432C>A 5433T>G) CAC1081GCG (5434C>G 5435A>C 5436C>G) CCG1082CTC (5438C>T 5439G>C) TTC1083GAG (5440T>G 5441T>A 5442C>G) CAG1084TGG (5443C>T 5444A>G) GTC1085GTG (5448C>G) GGG1086AGG (5449G>A) GAT1087CAG (5452G>C 5454T>G) CAA1088CGA (5456A>G) GTG1089GCG (5459T>C) CTT1090TGG (5461C>T 5462T>G 5463T>G) GTC1091AAG (5464G>A 5465T>A 5466C>G) AGA1092CAG (5467A>C 5468G>A 5469A>G) CGC1093CTC (5471G>T) CAT1094CGG (5474A>G 5475T>G) CGA1095GAG (5476C>G 5477G>A 5478A>G) CCC1096GCC (5479C>G) AGC1097TAC (5482A>T 5483G>A) AGC1098TCA (5485A>T 5486G>C 5487C>A) AGC1098_CTT1099insGGAGGAGACTTGCAA (5487_5488insGGAGGAGACTTGCAA) CTT1099GTT (5488C>G) GAG1100CCA (5491G>C 5492A>C 5493G>A) CCT1101CAT (5495C>A) CGG1102CGC (5499G>C) TGG1103TTC (5501G>T 5502G>C) AAA1104CAA (5503A>C) GGC1105GTT (5507G>T 5508C>T) CCA1106GGA (5509C>G 5510C>G) TAC1107GAT (5512T>G 5514C>T) CTG1108TCA (5515C>T 5516T>C 5517G>A) GTG1109GTC (5520G>C) TTG1110TAT (5522T>A 5523G>T) CTG1111GTT (5524C>G 5526G>T) ACT1112AGA (5528C>G 5529T>A) ACC1113CGC (5530A>C 5531C>G) CCG1114CAC (5534C>A 5535G>C) ACC1115CGT (5536A>C 5537C>G 5538C>T) GCG1116GCA (5541G>A) GTA1117GGA (5543T>G) AAA1118AAC (5547A>C) GTC1119CTC (5548G>C) GAT1120GAG (5553T>G) GGT1121_ATT1122del (5554_5559delGGTATT) GCT1123ACT (5560G>A) GCC1124CGG (5563G>C 5564C>G 5565C>G) GTC1126AAG (5569G>A 5570T>A 5571C>G) CAT1127GGA (5572C>G 5573A>G 5574T>A) GCT1128CCT (5575G>C) TCT1129TAT (5579C>A) CAC1130CTC (5582A>T) CTC1131GTA (5584C>G 5586C>A) AAA1132CTT (5587A>C 5588A>T 5589A>T) CCT1133TTG (5590C>T 5591C>T 5592T>G) GCA1134ACC (5593G>A 5595A>C) CCA1135ACA (5596C>A) CCT1136CCA (5601T>A) TCG1137ACG (5602T>A) GCA1138GCT (5607A>T) CCA1139GTG (5608C>G 5609C>T 5610A>G) GAT1140AAA (5611G>A 5613T>A) GAG1141GTC (5615A>T 5616G>C) GAG1141_TCC1142insGAAGGAATCCCC (5617T>G 5617_5618insAAGGAATCCCCA) TCC1142ACC (5617_5618insAAGGAATCCCCA) GAG1144ATC (5623G>A 5624A>T 5625G>C) CTG1145CAT (5627T>A 5628G>T) GAA1146GCA (5630A>C) AAG1147TCC (5632A>T 5633A>C 5634G>C) ACT1148CAC (5635A>C 5636C>A 5637T>C) GAT1149GTT (5639A>T) CAT1150AAG (5641C>A 5643T>G) CCT1151CCG (5646T>G) CTT1152GCG (5647C>G 5648T>C 5649T>G) AAG1153CCA (5650A>C 5651A>C 5652G>A) CTG1154CCT (5654T>C 5655G>T) CGT1155CCC (5657G>C 5658T>C) ATT1156GAT (5659A>G 5660T>A) CGG1157TCG (5662C>T 5663G>C) CGG1158GGG (5665C>G) CGG1159TGG (5668C>T) CGG1160AAA (5671C>A 5672G>A 5673G>A) GAC1161GCC (5675A>C) GAG1162GAA (5679G>A) TCT1163AAG (5680T>A 5681C>A 5682T>G) GCA1164ACT (5683G>A 5685A>T) AAA1165GAA (5686A>G) TAA1166AAT (5689T>A 5691A>T)
GALVgp3	1	668	93.0%	1810	42.2%	599 (93.2%)	256 (39.8%)	22/22/0/0	2
Protein mutations:	M1R (5553T>G 5554_5559delGGTATT) V2_L3del (5554_5559delGGTATT 5560G>A) P5G (5564C>G 5565C>G) S7R (5570T>A 5571C>G 5572C>G) M8D (5573A>G 5574T>A 5575G>C) L10I (5579C>A) T11S (5582A>T 5584C>G) S12Y (5586C>A 5587A>C) N13F (5588A>T 5589A>T 5590C>T) L14* (5591C>T 5592T>G 5593G>A) H15P (5595A>C 5596C>A) L17Q (5601T>A 5602T>A) H19L (5607A>T 5608C>G) Q20* (5609C>T 5610A>G 5611G>A) M21K (5613T>A) S22_P23insKESP (5617_5618insAAGGAATCCCCA) W26M (5627T>A 5628G>T) K27H (5630A>C 5632A>T) R28P (5633A>C 5634G>C 5635A>C) L29T (5636C>A 5637T>C) I30L (5639A>T 5641C>A) I31S (5643T>G) L32R (5646T>G 5647C>G) L33R (5648T>C 5649T>G 5650A>C) S34H (5651A>C 5652G>A) C35L (5654T>C 5655G>T) V36P (5657G>C 5658T>C 5659A>G) F37I (5660T>A 5662C>T) G38R (5663G>C 5665C>G) G41K (5672G>A 5673G>A) T42P (5675A>C) S43K (5679G>A 5680T>A) L44R (5681C>A 5682T>G 5683G>A) Q45L (5685A>T 5686A>G) N46K (5689T>A) K47I (5691A>T 5692G>C) N48del (5693_5695delAAC) H50L (5699C>T 5700A>T 5701C>A) Q51S (5702C>A 5703A>G 5704G>C) P52F (5705C>T 5706C>T) M53A (5708A>G 5709T>C 5710G>C) T54S (5711A>T) L55I (5714C>A) T56A (5717A>G 5719T>G) W57_Q58insF (5722_5723insTTC) Q58L (5724A>T 5725G>T) V59T (5726G>A 5727T>C 5728A>T) Q62I (5735C>A 5736A>T) G64P (5741G>C 5742G>C 5743A>T) D65Q (5744G>C 5746C>A) V67N (5750G>A 5751T>A 5752C>T) W68del (5753_5755delTGG) D69G (5757A>G) T70K (5760C>A) K71R (5762A>C 5763A>G 5764G>C) A72L (5765G>C 5766C>T 5767A>T) Q74D (5771C>G 5773G>C) P75S (5774C>A 5775C>G) W77_W80del (5780_5791delTGGACTTGGTGG) P81N (5792C>A 5793C>A) T82S (5795A>T 5797A>C) L83H (5799T>A) D86L (5807G>T 5808A>T 5809T>A) V87S (5810G>T 5811T>C 5812A>T) C88L (5813T>C 5814G>T 5815T>C) A89T (5816G>A) L90W (5820T>G) A91L (5822G>T 5823C>T 5824G>A) A92L (5825G>C 5826C>T) S93T (5829G>C) L94del (5831_5833delCTT) E95D (5836G>C) W97G (5840T>G 5842G>T) D98_I99del (5843_5848delGATATC) P100T (5849C>A 5851G>A) T102I (5856C>T 5857C>T) D103N (5858G>A) V104I (5861G>A 5863C>T) S105N (5864T>A 5865C>A 5866G>C) S107T (5870T>A) K108Q (5873A>C) R109G (5876C>G 5878A>G) V110E (5880T>A 5881C>G) R111A (5882A>G 5883G>C 5884A>T) P113L (5888C>T 5889C>T) D114G (5892A>G 5893C>G) S115T (5894T>A 5896A>C) D116W (5897G>T 5898A>G 5899C>G) Y117W (5901A>G 5902T>G) T118P (5903A>C) A119E (5907C>A 5908C>A) A120L (5909G>T 5910C>T 5911T>A) Y121_K122insVCL (5914_5915insGTCTGCCTT) K122R (5915A>C 5916A>G 5917G>A) Q123S (5918C>T 5919A>C) I124V (5921A>G 5923C>A) T125I (5925C>T) W126P (5927T>C 5928G>C 5929G>T) A128L (5933G>C 5934C>T) I129N (5937T>A 5938A>T) G130D (5940G>A 5941G>C) C131Q (5942T>C 5943G>A 5944C>G) S132A (5945A>G 5946G>C) Y133T (5948T>A 5949A>C 5950C>A) R135P (5955G>C 5956G>C) A136D (5958C>A) R137V (5960A>G 5961G>T 5962G>A) T138L (5963A>C 5964C>T 5965T>C) M140A (5969A>G 5970T>C 5971G>T) A141Y (5972G>T 5973C>A 5974A>C) S142G (5975A>G 5977C>G) S143_T144del (5978_5983delTCTACC) R150_D151del (5999_6004delCGGGAT) R153P (6009G>C 6010G>C) T154P (6011A>C 6013C>A) L155N (6014C>A 6015T>A) S156N (6017T>A 6018C>A 6019A>T) A158E (6024C>A 6025T>A) R159Y (6026A>T 6027G>A 6028A>T) R160del (6029_6031delAGG) G163N (6038G>A 6039G>A 6040G>T) L164P (6042T>C 6043A>T) E165Q (6044G>C 6046A>G) S166D (6047T>G 6048C>A 6049C>T) L167F (6050C>T 6052A>C) Y168F (6054A>T 6055C>T) E171Q (6062G>C) D173S (6068G>A 6069A>G 6070T>C) E175I (6074G>A 6075A>T 6076G>A) T177S (6080A>T 6082G>T) G178N (6083G>A 6084G>A 6085G>T) T179D (6086A>G 6087C>A 6088C>T) Y181N (6092T>A) L183K (6098C>A 6099T>A) S184W (6102C>G 6103T>G) K185P (6104A>C 6105A>C) S186V (6107T>G 6108C>T) S187_K188insQ (6112_6113insCAG) K188Q (6113A>C) L190R (6119C>A 6120T>G 6121C>A) I191V (6122A>G) T192S (6126C>G) V193Y (6128G>T 6129T>A 6130A>C) K194S (6131A>T 6132A>C 6133A>T) W195F (6135G>T 6136G>T) D196V (6138A>T 6139C>T) Q197N (6140C>A 6142A>C) S199P (6146A>C 6147G>C 6148C>T) E200T (6149G>A 6150A>C 6151A>C) W201S (6152T>A 6154G>T) T202Y (6155A>T 6156C>A) Q203N (6158C>A 6160A>T) K204Q (6161A>C) Q206N (6167C>A 6169A>T) Q207Y (6170C>T 6172G>T) C208G (6173T>G 6175T>C) H209_Q210insGR (6178_6179insGGGAGA) Q210W (6179C>T 6180A>G) T211K (6183C>A 6184C>A) G212D (6186G>A 6187C>T) C214Q (6191T>C 6192G>A 6193T>A) N215Q (6194A>C 6196C>G) P216R (6198C>G 6199C>G) L217V (6200C>G 6202T>A) K218Q (6203A>C) I219K (6207T>A) F221V (6212T>G 6214C>A) T222R (6215A>C 6216C>G) D223N (6218G>A 6220C>T) G225del (6224_6226delGGA) K226Q (6227A>C) L227I (6230T>A) K229C (6236A>T 6237A>G 6238G>T) D230H (6239G>C 6241C>T) W231S (6243G>C) I232L (6245A>T) T233D (6248A>G 6249C>A 6250G>C) G234L (6251G>C 6252G>T) K235D (6254A>G 6256A>T) T236Y (6257A>T 6258C>A) W237L (6261G>T 6262G>A) G238K (6263G>A 6264G>A) L239I (6266T>A) R240S (6271A>T) Y242T (6275T>A 6276A>C) V243_G245del (6278_6286delGTGTCTGGA) H246E (6287C>G 6289T>A) P247K (6290C>A 6291C>A) V249K (6296G>A 6297T>A) F251E (6302T>G 6303T>A 6304C>A) T252N (6306C>A 6307C>T) R254Q (6312G>A 6313C>A) L255K (6314T>A 6315T>A 6316A>G) K256W (6317A>T 6318A>G 6319A>G) I257V (6320A>G 6322C>A) T258N (6324C>A 6325C>T) N259G (6326A>G 6327A>G 6328C>T) M260I (6331G>A) P261S (6332C>T 6334A>T) A262W (6335G>T 6336C>G 6337T>G) V263G (6339T>G 6340G>A) A264I (6341G>A 6342C>T) G266Y (6347G>T 6348G>A 6349T>C) P267Y (6350C>T 6351C>A) D268G (6354A>G 6355C>A) L269G (6356C>G 6357T>G) V270S (6359G>T 6360T>C 6361C>T) L271G (6362C>G 6363T>G 6364T>G) V272R (6365G>A 6366T>G 6367G>A) E273K (6368G>A 6370A>G) Q274K (6371C>A) P276S (6377C>T) P276_P277insVLTIR (6379_6380insGTTCTGACTATTCGC) P277L (6381C>T 6382T>C) T279I (6387C>T 6388G>A) S280E (6389T>G 6390C>A 6391C>A) L281T (6392C>A 6393T>C 6394C>T) A282Q (6395G>C 6396C>A 6397T>G) L283M (6398C>A 6400C>G) P284E (6401C>G 6402C>A) L287V (6410C>G) P288A (6413C>G 6415C>T) P289I (6416C>A 6417C>T) R290_E291del (6419_6424delAGGGAA) A292G (6426C>G 6427G>A) P294N (6431C>A 6432C>A 6433G>T) P295K (6434C>A 6435C>A 6436A>G) S296G (6437T>G 6438C>G) P298A (6443C>G) D299E (6448C>A) S300Q (6449T>C 6450C>A 6451T>A) N301G (6452A>G 6453A>G 6454C>A) S302P (6455T>C 6457C>T) T303P (6458A>C) A304I (6461G>A 6462C>T) L305Q (6465T>A 6466G>A) A306E (6468C>A 6469G>A) T307Q (6470A>C 6471C>A 6472T>G) S308R (6475T>G) A309P (6476G>C) A309_Q310insS (6478_6479insTCT) Q310P (6480A>C 6481A>T) T311N (6483C>A 6484T>C) T313S (6488A>T 6490G>T) V314D (6492T>A 6493G>T) R315Y (6494A>T 6495G>A 6496A>C) K316N (6499A>T) I318T (6504T>C 6505T>C) V319S (6506G>T 6507T>C) V319_T320insG (6508_6509insGGA) T320S (6509A>T 6511C>A) L321V (6512C>G 6514A>C) N322P (6515A>C 6516A>C) P324E (6521C>G 6522C>A) P326N (6527C>A 6528C>A) T327I (6531C>T) T327_T328insTIK (6532_6533insACTATTAAA) D330A (6540A>C 6541C>G) R331K (6543G>A) D334S (6551G>A 6552A>G 6553T>C) V336I (6557G>A 6559G>C) L341Q (6573T>A) T342A (6575A>G 6577C>T) A345S (6584G>T 6586T>C) N347T (6591A>C 6592C>T) G349E (6597G>A) E352S (6605G>T 6606A>C 6607G>T) M360S (6629A>T 6630T>C) A367G (6651C>G) I368M (6655A>G) S370R (6659T>A 6660C>G) S371G (6662T>G 6663C>G) E373K (6668G>A 6670G>A) V374F (6671G>T) A375N (6674G>A 6675C>A 6676C>T) Y376V (6677T>G 6678A>T 6679C>G) S377T (6680T>A 6682C>A) T378K (6684C>A 6685C>G) D379E (6688C>A) L380H (6690T>A) L380_D381insR (6691_6692insAGA) R382Q (6696G>A 6697G>A) R384T (6701C>A 6702G>C 6703C>A) T387S (6710A>T) G389N (6716G>A 6717G>A 6718A>T) H399K (6746C>A 6748C>A) L401T (6752T>A 6753T>C 6754G>C) K405M (6765A>T) F408P (6773T>C 6774T>C 6775T>A) T409S (6776A>T) Q416H (6799G>C) L418E (6803C>G 6804T>A) S419A (6806T>G) I420F (6809A>T 6811C>T) S422R (6815T>C 6816C>G 6817C>A) S423T (6818T>A) G424S (6821G>T 6822G>C 6823A>T) D425E (6826C>G) H426S (6827C>A 6828A>G) L430V (6839C>G 6841C>A) S432G (6845T>G 6846C>G 6847C>T) N433Y (6848A>T 6850C>T) H434D (6851C>G 6853T>C) S435R (6856C>G) S440N (6870G>A 6871C>T) L447V (6890C>G 6892C>T) S450L (6900C>T 6901A>G) R456K (6918G>A) I460V (6929A>G 6931C>T) Q461M (6932C>A 6933A>T) L464I (6941C>A 6943G>T) I465V (6944A>G 6946T>C) I468V (6953A>G 6955C>G) E474K (6971G>A) V475A (6975T>C 6976T>A) L476V (6977T>G 6979G>C) Q478D (6983C>G 6985G>T) A479E (6987C>A 6988C>A) N482Y (6995A>T) S483R (6998T>A 6999C>G 7000T>A) H484Y (7001C>T 7003C>T) P485N (7004C>A 7005C>A 7006C>T) T487P (7010A>C 7012T>A) A491P (7022G>C 7024T>C) V492I (7025G>A 7027C>A) L499M (7046T>A 7048A>G) I504T (7062T>C 7063C>G) T505A (7064A>G 7066G>C) A506V (7068C>T 7069G>T) I508V (7073A>G) A577V (7281C>T 7282G>A) I587V (7310A>G) V593I (7328G>A 7330A>C) K598S (7344A>G 7345A>C) K601R (7353A>G) K603R (7359A>G 7360A>G) D605E (7366T>G) K606R (7368A>G 7369A>G) Q608R (7374A>G 7375G>A) L609R (7376T>A 7377T>G 7378A>G) Q612E (7385C>G) K613A (7388A>G 7389A>C 7390A>T) S614D (7391A>G 7392G>A) N616G (7397A>G 7398A>G 7399C>G) Y618F (7404A>T) N624R (7422A>G 7423C>G) F628M (7433T>A 7435C>G) T634A (7451A>G 7453C>T) I635L (7454A>C 7456C>G) A636T (7457G>A 7459T>G) L640V (7469T>G) L641V (7472C>G) I647T (7491T>C 7492C>A) L648V (7493C>G 7495C>T) I652L (7505A>T 7507C>A) K655R (7515A>G) L656F (7519A>T) Q658A (7523C>G 7524A>C 7525A>C) I660V (7529A>G 7531C>T) N661R (7533A>G 7534T>A) D662E (7537T>A) I664V (7541A>G 7543A>G) C667V (7550T>G 7551G>T 7552T>C) *668Q (7553T>C 7555A>G)
Codon mutations:	ATG1AGA (5553T>G 5554_5559delGGTATT) GTA2_TTG3del (5554_5559delGGTATT 5560G>A) CTG4CTC (5563G>C) CCT5GGT (5564C>G 5565C>G) GGG6GGA (5569G>A) TCC7AGG (5570T>A 5571C>G 5572C>G) ATG8GAC (5573A>G 5574T>A 5575G>C) CTC10ATC (5579C>A) ACC11TCG (5582A>T 5584C>G) TCA12TAC (5586C>A 5587A>C) AAC13TTT (5588A>T 5589A>T 5590C>T) CTG14TGA (5591C>T 5592T>G 5593G>A) CAC15CCA (5595A>C 5596C>A) CTT17CAA (5601T>A 5602T>A) CAC19CTG (5607A>T 5608C>G) CAG20TGA (5609C>T 5610A>G 5611G>A) ATG21AAG (5613T>A) AGT22TCG (5615A>T 5616G>C 5617T>G) AGT22_CCT23insAAGGAATCCCCA (5617_5618insAAGGAATCCCCA) GGG24GGA (5623G>A) AGC25TCC (5624A>T 5625G>C) TGG26ATG (5627T>A 5628G>T) AAA27CAT (5630A>C 5632A>T) AGA28CCC (5633A>C 5634G>C 5635A>C) CTG29ACG (5636C>A 5637T>C) ATC30TTA (5639A>T 5641C>A) ATC31AGC (5643T>G) CTC32CGG (5646T>G 5647C>G) TTA33CGC (5648T>C 5649T>G 5650A>C) AGC34CAC (5651A>C 5652G>A) TGC35CTC (5654T>C 5655G>T) GTA36CCG (5657G>C 5658T>C 5659A>G) TTC37ATT (5660T>A 5662C>T) GGC38CGG (5663G>C 5665C>G) GGC39GGT (5668C>T) GGC40GGA (5671C>A) GGG41AAG (5672G>A 5673G>A) ACG42CCG (5675A>C) AGT43AAA (5679G>A 5680T>A) CTG44AGA (5681C>A 5682T>G 5683G>A) CAA45CTG (5685A>T 5686A>G) AAT46AAA (5689T>A) AAG47ATC (5691A>T 5692G>C) AAC48del (5693_5695delAAC) CAC50TTA (5699C>T 5700A>T 5701C>A) CAG51AGC (5702C>A 5703A>G 5704G>C) CCC52TTC (5705C>T 5706C>T) ATG53GCC (5708A>G 5709T>C 5710G>C) ACC54TCC (5711A>T) CTC55ATC (5714C>A) ACT56GCG (5717A>G 5719T>G) TGG57_CAG58insTTC (5722_5723insTTC) CAG58CTT (5724A>T 5725G>T) GTA59ACT (5726G>A 5727T>C 5728A>T) TCC61TCA (5734C>A) CAA62ATA (5735C>A 5736A>T) GGA64CCT (5741G>C 5742G>C 5743A>T) GAC65CAA (5744G>C 5746C>A) GTC67AAT (5750G>A 5751T>A 5752C>T) TGG68del (5753_5755delTGG) GAT69GGT (5757A>G) ACA70AAA (5760C>A) AAG71CGC (5762A>C 5763A>G 5764G>C) GCA72CTT (5765G>C 5766C>T 5767A>T) GTC73GTG (5770C>G) CAG74GAC (5771C>G 5773G>C) CCC75AGC (5774C>A 5775C>G) CCT76CCG (5779T>G) TGG77_TGG80del (5780_5791delTGGACTTGGTGG) CCC81AAC (5792C>A 5793C>A) ACA82TCC (5795A>T 5797A>C) CTT83CAT (5799T>A) CCT85CCC (5806T>C) GAT86TTA (5807G>T 5808A>T 5809T>A) GTA87TCT (5810G>T 5811T>C 5812A>T) TGT88CTC (5813T>C 5814G>T 5815T>C) GCC89ACC (5816G>A) TTG90TGG (5820T>G) GCG91TTA (5822G>T 5823C>T 5824G>A) GCT92CTT (5825G>C 5826C>T) AGT93ACT (5829G>C) CTT94del (5831_5833delCTT) GAG95GAC (5836G>C) TGG97GGT (5840T>G 5842G>T) GAT98_ATC99del (5843_5848delGATATC) CCG100ACA (5849C>A 5851G>A) GGA101GGT (5854A>T) ACC102ATT (5856C>T 5857C>T) GAT103AAT (5858G>A) GTC104ATT (5861G>A 5863C>T) TCG105AAC (5864T>A 5865C>A 5866G>C) TCC106AGC (5867T>A 5868C>G) TCT107ACT (5870T>A) AAA108CAA (5873A>C) CGA109GGG (5876C>G 5878A>G) GTC110GAG (5880T>A 5881C>G) AGA111GCT (5882A>G 5883G>C 5884A>T) CCT112CCC (5887T>C) CCG113TTG (5888C>T 5889C>T) GAC114GGG (5892A>G 5893C>G) TCA115ACC (5894T>A 5896A>C) GAC116TGG (5897G>T 5898A>G 5899C>G) TAT117TGG (5901A>G 5902T>G) ACT118CCT (5903A>C) GCC119GAA (5907C>A 5908C>A) GCT120TTA (5909G>T 5910C>T 5911T>A) TAT121_AAG122insGTCTGCCTT (5914_5915insGTCTGCCTT) AAG122CGA (5915A>C 5916A>G 5917G>A) CAA123TCA (5918C>T 5919A>C) ATC124GTA (5921A>G 5923C>A) ACC125ATC (5925C>T) TGG126CCT (5927T>C 5928G>C 5929G>T) GGA127GGT (5932A>T) GCC128CTC (5933G>C 5934C>T) ATA129AAT (5937T>A 5938A>T) GGG130GAC (5940G>A 5941G>C) TGC131CAG (5942T>C 5943G>A 5944C>G) AGC132GCC (5945A>G 5946G>C) TAC133ACA (5948T>A 5949A>C 5950C>A) CCT134CCC (5953T>C) CGG135CCC (5955G>C 5956G>C) GCT136GAT (5958C>A) AGG137GTA (5960A>G 5961G>T 5962G>A) ACT138CTC (5963A>C 5964C>T 5965T>C) AGA139CGT (5966A>C 5968A>T) ATG140GCT (5969A>G 5970T>C 5971G>T) GCA141TAC (5972G>T 5973C>A 5974A>C) AGC142GGG (5975A>G 5977C>G) TCT143_ACC144del (5978_5983delTCTACC) TTC145TTT (5986C>T) GTA147GTT (5992A>T) TGT148TGC (5995T>C) CCC149CCA (5998C>A) CGG150_GAT151del (5999_6004delCGGGAT) GGC152GGA (6007C>A) CGG153CCC (6009G>C 6010G>C) ACC154CCA (6011A>C 6013C>A) CTT155AAT (6014C>A 6015T>A) TCA156AAT (6017T>A 6018C>A 6019A>T) GCT158GAA (6024C>A 6025T>A) AGA159TAT (6026A>T 6027G>A 6028A>T) AGG160del (6029_6031delAGG) TGC161TGT (6034C>T) GGG162GGA (6037G>A) GGG163AAT (6038G>A 6039G>A 6040G>T) CTA164CCT (6042T>C 6043A>T) GAA165CAG (6044G>C 6046A>G) TCC166GAT (6047T>G 6048C>A 6049C>T) CTA167TTC (6050C>T 6052A>C) TAC168TTT (6054A>T 6055C>T) TGT169TGC (6058T>C) AAA170AAG (6061A>G) GAA171CAA (6062G>C) GAT173AGC (6068G>A 6069A>G 6070T>C) TGT174TGC (6073T>C) GAG175ATA (6074G>A 6075A>T 6076G>A) ACC176ACT (6079C>T) ACG177TCT (6080A>T 6082G>T) GGG178AAT (6083G>A 6084G>A 6085G>T) ACC179GAT (6086A>G 6087C>A 6088C>T) GGT180GGG (6091T>G) TAT181AAT (6092T>A) CTA183AAA (6098C>A 6099T>A) TCT184TGG (6102C>G 6103T>G) AAA185CCA (6104A>C 6105A>C) TCC186GTC (6107T>G 6108C>T) TCA187TCT (6112A>T) TCA187_AAA188insCAG (6112_6113insCAG) AAA188CAA (6113A>C) CTC190AGA (6119C>A 6120T>G 6121C>A) ATA191GTA (6122A>G) ACT192AGT (6126C>G) GTA193TAC (6128G>T 6129T>A 6130A>C) AAA194TCT (6131A>T 6132A>C 6133A>T) TGG195TTT (6135G>T 6136G>T) GAC196GTT (6138A>T 6139C>T) CAA197AAC (6140C>A 6142A>C) AGC199CCT (6146A>C 6147G>C 6148C>T) GAA200ACC (6149G>A 6150A>C 6151A>C) TGG201AGT (6152T>A 6154G>T) ACT202TAT (6155A>T 6156C>A) CAA203AAT (6158C>A 6160A>T) AAA204CAA (6161A>C) CAA206AAT (6167C>A 6169A>T) CAG207TAT (6170C>T 6172G>T) TGT208GGC (6173T>G 6175T>C) CAC209CAT (6178C>T) CAC209_CAG210insGGGAGA (6178_6179insGGGAGA) CAG210TGG (6179C>T 6180A>G) ACC211AAA (6183C>A 6184C>A) GGC212GAT (6186G>A 6187C>T) TGT214CAA (6191T>C 6192G>A 6193T>A) AAC215CAG (6194A>C 6196C>G) CCC216CGG (6198C>G 6199C>G) CTT217GTA (6200C>G 6202T>A) AAA218CAA (6203A>C) ATA219AAA (6207T>A) TTC221GTA (6212T>G 6214C>A) ACA222CGA (6215A>C 6216C>G) GAC223AAT (6218G>A 6220C>T) AAA224AAG (6223A>G) GGA225del (6224_6226delGGA) AAA226CAA (6227A>C) TTA227ATA (6230T>A) TCC228AGC (6233T>A 6234C>G) AAG229TGT (6236A>T 6237A>G 6238G>T) GAC230CAT (6239G>C 6241C>T) TGG231TCG (6243G>C) ATA232TTA (6245A>T) ACG233GAC (6248A>G 6249C>A 6250G>C) GGA234CTA (6251G>C 6252G>T) AAA235GAT (6254A>G 6256A>T) ACC236TAC (6257A>T 6258C>A) TGG237TTA (6261G>T 6262G>A) GGA238AAA (6263G>A 6264G>A) TTA239ATA (6266T>A) AGA240AGT (6271A>T) TAT242ACT (6275T>A 6276A>C) GTG243_GGA245del (6278_6286delGTGTCTGGA) CAT246GAA (6287C>G 6289T>A) CCA247AAA (6290C>A 6291C>A) GGC248GGA (6295C>A) GTA249AAA (6296G>A 6297T>A) CAG250CAA (6301G>A) TTC251GAA (6302T>G 6303T>A 6304C>A) ACC252AAT (6306C>A 6307C>T) CGC254CAA (6312G>A 6313C>A) TTA255AAG (6314T>A 6315T>A 6316A>G) AAA256TGG (6317A>T 6318A>G 6319A>G) ATC257GTA (6320A>G 6322C>A) ACC258AAT (6324C>A 6325C>T) AAC259GGT (6326A>G 6327A>G 6328C>T) ATG260ATA (6331G>A) CCA261TCT (6332C>T 6334A>T) GCT262TGG (6335G>T 6336C>G 6337T>G) GTG263GGA (6339T>G 6340G>A) GCA264ATA (6341G>A 6342C>T) GTA265GTG (6346A>G) GGT266TAC (6347G>T 6348G>A 6349T>C) CCT267TAT (6350C>T 6351C>A) GAC268GGA (6354A>G 6355C>A) CTC269GGC (6356C>G 6357T>G) GTC270TCT (6359G>T 6360T>C 6361C>T) CTT271GGG (6362C>G 6363T>G 6364T>G) GTG272AGA (6365G>A 6366T>G 6367G>A) GAA273AAG (6368G>A 6370A>G) CAA274AAA (6371C>A) CCT276TCT (6377C>T) CCT276_CCT277insGTTCTGACTATTCGC (6379_6380insGTTCTGACTATTCGC) CCT277CTC (6381C>T 6382T>C) ACG279ATA (6387C>T 6388G>A) TCC280GAA (6389T>G 6390C>A 6391C>A) CTC281ACT (6392C>A 6393T>C 6394C>T) GCT282CAG (6395G>C 6396C>A 6397T>G) CTC283ATG (6398C>A 6400C>G) CCA284GAA (6401C>G 6402C>A) CCT286CCG (6409T>G) CTT287GTT (6410C>G) CCC288GCT (6413C>G 6415C>T) CCA289ATA (6416C>A 6417C>T) AGG290_GAA291del (6419_6424delAGGGAA) GCG292GGA (6426C>G 6427G>A) CCG294AAT (6431C>A 6432C>A 6433G>T) CCA295AAG (6434C>A 6435C>A 6436A>G) TCT296GGT (6437T>G 6438C>G) CTC297TTG (6440C>T 6442C>G) CCC298GCC (6443C>G) GAC299GAA (6448C>A) TCT300CAA (6449T>C 6450C>A 6451T>A) AAC301GGA (6452A>G 6453A>G 6454C>A) TCC302CCT (6455T>C 6457C>T) ACA303CCA (6458A>C) GCC304ATC (6461G>A 6462C>T) CTG305CAA (6465T>A 6466G>A) GCG306GAA (6468C>A 6469G>A) ACT307CAG (6470A>C 6471C>A 6472T>G) AGT308AGG (6475T>G) GCA309CCA (6476G>C) GCA309_CAA310insTCT (6478_6479insTCT) CAA310CCT (6480A>C 6481A>T) ACT311AAC (6483C>A 6484T>C) ACG313TCT (6488A>T 6490G>T) GTG314GAT (6492T>A 6493G>T) AGA315TAC (6494A>T 6495G>A 6496A>C) AAA316AAT (6499A>T) ATT318ACC (6504T>C 6505T>C) GTT319TCT (6506G>T 6507T>C) GTT319_ACC320insGGA (6508_6509insGGA) ACC320TCA (6509A>T 6511C>A) CTA321GTC (6512C>G 6514A>C) AAC322CCC (6515A>C 6516A>C) CCG324GAG (6521C>G 6522C>A) CCC326AAC (6527C>A 6528C>A) ACC327ATC (6531C>T) ACC327_ACA328insACTATTAAA (6532_6533insACTATTAAA) GGC329GGG (6538C>G) GAC330GCG (6540A>C 6541C>G) AGA331AAA (6543G>A) GAT334AGC (6551G>A 6552A>G 6553T>C) CTT335CTC (6556T>C) GTG336ATC (6557G>A 6559G>C) GGG338GGA (6565G>A) GCC339GCT (6568C>T) TTC340TTT (6571C>T) CTA341CAA (6573T>A) ACC342GCT (6575A>G 6577C>T) TTA343CTT (6578T>C 6580A>T) AAT344AAC (6583T>C) GCT345TCC (6584G>T 6586T>C) ACC346ACG (6589C>G) AAC347ACT (6591A>C 6592C>T) GGG349GAG (6597G>A) GCC350GCT (6601C>T) ACT351ACC (6604T>C) GAG352TCT (6605G>T 6606A>C 6607G>T) TGC354TGT (6613C>T) TGT357TGC (6622T>C) TTG358TTA (6625G>A) GCC359GCT (6628C>T) ATG360TCG (6629A>T 6630T>C) CCC362CCA (6637C>A) TAT364TAC (6643T>C) GAA366GAG (6649A>G) GCA367GGA (6651C>G) ATA368ATG (6655A>G) GCC369GCT (6658C>T) TCA370AGA (6659T>A 6660C>G) TCA371GGA (6662T>G 6663C>G) GGA372GGG (6667A>G) GAG373AAA (6668G>A 6670G>A) GTC374TTC (6671G>T) GCC375AAT (6674G>A 6675C>A 6676C>T) TAC376GTG (6677T>G 6678A>T 6679C>G) TCC377ACA (6680T>A 6682C>A) ACC378AAG (6684C>A 6685C>G) GAC379GAA (6688C>A) CTT380CAT (6690T>A) CTT380_GAC381insAGA (6691_6692insAGA) CGG382CAA (6696G>A 6697G>A) TGC383TGT (6700C>T) CGC384ACA (6701C>A 6702G>C 6703C>A) GGG386GGA (6709G>A) ACC387TCC (6710A>T) GGA389AAT (6716G>A 6717G>A 6718A>T) CTC391CTT (6724C>T) CTC393CTT (6730C>T) GTC396GTT (6739C>T) TCA397TCT (6742A>T) CAC399AAA (6746C>A 6748C>A) GGG400GGC (6751G>C) TTG401ACC (6752T>A 6753T>C 6754G>C) GGA404GGG (6763A>G) AAG405ATG (6765A>T) GTG406GTT (6769G>T) TTT408CCA (6773T>C 6774T>C 6775T>A) ACC409TCC (6776A>T) CAT410CAC (6781T>C) CAG411CAA (6784G>A) CAT412CAC (6787T>C) CTC413CTT (6790C>T) TGC414TGT (6793C>T) AAT415AAC (6796T>C) CAG416CAC (6799G>C) ACC417ACT (6802C>T) CTA418GAA (6803C>G 6804T>A) TCC419GCC (6806T>G) ATC420TTT (6809A>T 6811C>T) TCC422CGA (6815T>C 6816C>G 6817C>A) TCC423ACC (6818T>A) GGA424TCT (6821G>T 6822G>C 6823A>T) GAC425GAG (6826C>G) CAT426AGT (6827C>A 6828A>G) CAG427CAA (6832G>A) CTC430GTA (6839C>G 6841C>A) CCC431CCT (6844C>T) TCC432GGT (6845T>G 6846C>G 6847C>T) AAC433TAT (6848A>T 6850C>T) CAT434GAC (6851C>G 6853T>C) AGC435AGG (6856C>G) GCT438GCA (6865T>A) TGC439TGT (6868C>T) AGC440AAT (6870G>A 6871C>T) GGC442GGA (6877C>A) CTC443TTA (6878C>T 6880C>A) TGC446TGT (6889C>T) CTC447GTT (6890C>G 6892C>T) TCA450TTG (6900C>T 6901A>G) TTT452TTC (6907T>C) AAT453AAC (6910T>C) CAG454CAA (6913G>A) AGA456AAA (6918G>A) GAT457GAC (6922T>C) TTC458TTT (6925C>T) TGT459TGC (6928T>C) ATC460GTT (6929A>G 6931C>T) CAG461ATG (6932C>A 6933A>T) CAG463CAA (6940G>A) CTG464ATT (6941C>A 6943G>T) ATT465GTC (6944A>G 6946T>C) CCT466CCC (6949T>C) CGC467CGG (6952C>G) ATC468GTG (6953A>G 6955C>G) TAT469TAC (6958T>C) CCT472CCC (6967T>C) GAA474AAA (6971G>A) GTT475GCA (6975T>C 6976T>A) TTG476GTC (6977T>G 6979G>C) TTA477CTT (6980T>C 6982A>T) CAG478GAT (6983C>G 6985G>T) GCC479GAA (6987C>A 6988C>A) AAT482TAT (6995A>T) TCT483AGA (6998T>A 6999C>G 7000T>A) CAC484TAT (7001C>T 7003C>T) CCC485AAT (7004C>A 7005C>A 7006C>T) AGG486CGG (7007A>C) ACT487CCA (7010A>C 7012T>A) GCT491CCC (7022G>C 7024T>C) GTC492ATA (7025G>A 7027C>A) TCA493TCC (7030A>C) CTT494CTG (7033T>G) GTT498GTA (7045T>A) TTA499ATG (7046T>A 7048A>G) CTG500CTC (7051G>C) GGG501GGA (7054G>A) TTG502TTA (7057G>A) GGA503GGG (7060A>G) ATC504ACG (7062T>C 7063C>G) ACG505GCC (7064A>G 7066G>C) GCG506GTT (7068C>T 7069G>T) GGA507GGC (7072A>C) ATA508GTA (7073A>G) GGT509GGA (7078T>A) GTG558GTT (7225G>T) CTC559CTA (7228C>A) CAA560CAG (7231A>G) AAT561AAC (7234T>C) AGG562AGA (7237G>A) AGA563AGG (7240A>G) GGC564GGG (7243C>G) CTT565TTA (7244C>T 7246T>A) GAC566GAT (7249C>T) TTG567CTG (7250T>C) CTG568TTA (7253C>T 7255G>A) GGT573GGA (7270T>A) GGC574GGG (7273C>G) CTC575TTA (7274C>T 7276C>A) GCG577GTA (7281C>T 7282G>A) CTA579TTA (7286C>T) AAG580AAA (7291G>A) GAA581GAG (7294A>G) GAG582GAA (7297G>A) TGT584TGC (7303T>C) TTT585TTC (7306T>C) TAC586TAT (7309C>T) ATA587GTA (7310A>G) GAC588GAT (7315C>T) GGT591GGA (7324T>A) GCA592GCC (7327A>C) GTA593ATC (7328G>A 7330A>C) CGG594AGA (7331C>A 7333G>A) AAA598AGC (7344A>G 7345A>C) AAA599AAG (7348A>G) CTC600CTT (7351C>T) AAA601AGA (7353A>G) AAA603AGG (7359A>G 7360A>G) CTG604TTA (7361C>T 7363G>A) GAT605GAG (7366T>G) AAA606AGG (7368A>G 7369A>G) AGA607CGT (7370A>C 7372A>T) CAG608CGA (7374A>G 7375G>A) TTA609AGG (7376T>A 7377T>G 7378A>G) GAG610GAA (7381G>A) CGC611AGA (7382C>A 7384C>A) CAG612GAG (7385C>G) AAA613GCT (7388A>G 7389A>C 7390A>T) AGC614GAC (7391A>G 7392G>A) CAA615CAG (7396A>G) AAC616GGG (7397A>G 7398A>G 7399C>G) TAT618TTT (7404A>T) AAT623AAC (7420T>C) AAC624AGG (7422A>G 7423C>G) TCC625TCT (7426C>T) TTC628ATG (7433T>A 7435C>G) ACT629ACC (7438T>C) CTA632CTT (7447A>T) TCA633TCT (7450A>T) ACC634GCT (7451A>G 7453C>T) ATC635CTG (7454A>C 7456C>G) GCT636ACG (7457G>A 7459T>G) TTA640GTA (7469T>G) CTC641GTC (7472C>G) CTC642CTG (7477C>G) CTT643CTC (7480T>C) TTG645TTA (7486G>A) CTC646CTT (7489C>T) ATC647ACA (7491T>C 7492C>A) CTC648GTT (7493C>G 7495C>T) CCA650CCT (7501A>T) ATC652TTA (7505A>T 7507C>A) ATC653ATT (7510C>T) AAG655AGG (7515A>G) TTA656TTT (7519A>T) CAA658GCC (7523C>G 7524A>C 7525A>C) TTC659TTT (7528C>T) ATC660GTT (7529A>G 7531C>T) AAT661AGA (7533A>G 7534T>A) GAT662GAA (7537T>A) AGG663CGA (7538A>C 7540G>A) ATA664GTG (7541A>G 7543A>G) TGT667GTC (7550T>G 7551G>T 7552T>C) TAA668CAG (7553T>C 7555A>G)
Proteins

hypothetical protein (NP_056789.1)	1	216	38.0%	840	57.2%	192 (95.0%)	104 (51.5%)	4/6/0/0	0
Protein mutations:	D4T (640G>A 641A>C 642T>A) N5V (643A>G 644A>T 645T>G) S6T (646T>A) I9L (655A>C 657C>T) N14D (670A>G 672T>C) R17T (680G>C 681A>T) D18E (684T>A) T21S (691A>T 693A>C) E29Q (715G>C 717A>G) I30V (718A>G 720C>T) K34P (730A>C 731A>C 732A>T) S40A (748T>G) G47D (770G>A 771C>T) P52S (784C>T 786G>A) V79E (866T>A 867T>G) V83L (877G>C 879G>T) V84T (880G>A 881T>C 882A>G) Q90E (898C>G 900G>A) N91D (901A>G) P97K (919C>A 920C>A) A98P (922G>C 924C>A) S99W (926C>G 927C>G) A100L (928G>C 929C>T 930C>A) K101N (933G>T) V102K (934G>A 935T>A 936C>A) A103P (937G>C 939T>A) V104R (940G>A 941T>G 942T>A) V105K (943G>A 944T>A 945C>G) S106P (946T>C 948T>A) D107G (950A>G) T108P (952A>C) R110I (959G>T 960A>C) P111L (962C>T 963A>G) V112A (965T>C) A113L (967G>C 968C>T 969G>T) R115E (973A>G 974G>A) P116K (976C>A 977C>A) S117N (979T>A 980C>A 981A>C) A118K (982G>A 983C>A 984T>A) P119H (986C>A 987T>C) P120S (988C>T 990C>G) R121A (991C>G 992G>C 993A>C) P122E (994C>G 995C>A 996C>A) P123K (997C>A 998C>A 999C>A) I124V (1000A>G) Y125E (1003T>G 1005C>G) A127S (1009G>T 1011A>T) T128P (1012A>C 1014A>T) D129R (1015G>C 1016A>G 1017C>T) D130I (1018G>A 1019A>T) L131Y (1022T>A 1023A>C) L132P (1025T>C) L133E (1027C>G 1028T>A 1029C>G) L134I (1030C>A) S135E (1033T>G 1034C>A 1035T>G) T138P (1042A>C) T138_P139insTW (1044_1045insACTTGG) P140E (1048C>G 1049C>A 1050G>A) Y142Q (1054T>C 1056T>A) A144V (1061C>T 1062G>T) A145P (1063G>C 1065A>C) L146del (1066_1068delCTG) L150Y (1078C>T 1079T>A 1080G>T) A151P (1081G>C 1083C>A) P152A (1084C>G 1086T>A) Q153_A154insG (1089_1090insGGT) I155V (1093A>G 1095C>G) G156R (1096G>A 1098A>G) P157G (1099C>G 1100C>G 1101G>A) G160A (1109G>C) Q161P (1112A>C 1113G>T) M162del (1114_1116delATG) D164G (1121A>G 1122T>A) S165A (1123A>G 1124G>C) S166P (1126A>C 1127G>C 1128C>G) D167V (1130A>T 1131T>G) P168V (1132C>G 1133C>T 1134T>G) A180G (1169C>G) R181A (1171C>G 1172G>C) S182T (1175G>C 1176T>C) A184E (1181C>A 1182A>G) D185_S187del (1183_1191delGACAACTCG) G188R (1192G>C 1194T>G) P189T (1195C>A 1197T>A) S191E (1201T>G 1202C>A 1203C>G) T192I (1205C>T 1206T>C) V193A (1208T>C) A199T (1225G>A) I200Y (1228A>T 1229T>A 1230A>T) A204del (1240_1242delGCC) E205M (1243G>A 1244A>T) N207G (1249A>G 1250A>G 1251T>G) G208_L209insQ (1254_1255insCAA) V210Q (1258G>C 1259T>A 1260C>G)
Codon mutations:	CAA3CAG (639A>G) GAT4ACA (640G>A 641A>C 642T>A) AAT5GTG (643A>G 644A>T 645T>G) TCT6ACT (646T>A) CCT8CCC (654T>C) ATC9CTT (655A>C 657C>T) TCC10AGT (658T>A 659C>G 660C>T) CTC11TTG (661C>T 663C>G) CTA13CTC (669A>C) AAT14GAC (670A>G 672T>C) CAC15CAT (675C>T) AGA17ACT (680G>C 681A>T) GAT18GAA (684T>A) GTG19GTT (687G>T) ACA21TCC (691A>T 693A>C) CAC24CAT (702C>T) CTA26TTG (706C>T 708A>G) TCC27TCA (711C>A) GTG28GTT (714G>T) GAA29CAG (715G>C 717A>G) ATC30GTT (718A>G 720C>T) AAA31AAG (723A>G) AAA34CCT (730A>C 731A>C 732A>T) TCC40GCC (748T>G) TCC41TCT (753C>T) GAG42GAA (756G>A) CCC44CCA (762C>A) GGC47GAT (770G>A 771C>T) GTG48GTT (774G>T) GGG49GGA (777G>A) CCG52TCA (784C>T 786G>A) GAG53GAA (789G>A) GGA54GGG (792A>G) ACT55ACC (795T>C) GGA74.GT (852A>T) CCG76CCT (858G>T) GAC77GAT (861C>T) CAA78CAG (864A>G) GTT79GAG (866T>A 867T>G) CCA80CCC (870A>C) GTG83CTT (877G>C 879G>T) GTA84ACG (880G>A 881T>C 882A>G) CAG86CAA (888G>A) GAC87GAT (891C>T) CTC88TTG (892C>T 894C>G) GCC89GCA (897C>A) CAG90GAA (898C>G 900G>A) AAT91GAT (901A>G) CCC92CCT (906C>T) CCA93CCG (909A>G) GTG96GTT (918G>T) CCA97AAA (919C>A 920C>A) GCC98CCA (922G>C 924C>A) TCC99TGG (926C>G 927C>G) GCC100CTA (928G>C 929C>T 930C>A) AAG101AAT (933G>T) GTC102AAA (934G>A 935T>A 936C>A) GCT103CCA (937G>C 939T>A) GTT104AGA (940G>A 941T>G 942T>A) GTC105AAG (943G>A 944T>A 945C>G) TCT106CCA (946T>C 948T>A) GAT107GGT (950A>G) ACC108CCC (952A>C) AGA110ATC (959G>T 960A>C) CCA111CTG (962C>T 963A>G) GTT112GCT (965T>C) GCG113CTT (967G>C 968C>T 969G>T) GGG114GGA (972G>A) AGG115GAG (973A>G 974G>A) CCA116AAA (976C>A 977C>A) TCA117AAC (979T>A 980C>A 981A>C) GCT118AAA (982G>A 983C>A 984T>A) CCT119CAC (986C>A 987T>C) CCC120TCG (988C>T 990C>G) CGA121GCC (991C>G 992G>C 993A>C) CCC122GAA (994C>G 995C>A 996C>A) CCC123AAA (997C>A 998C>A 999C>A) ATC124GTC (1000A>G) TAC125GAG (1003T>G 1005C>G) CCG126CCC (1008G>C) GCA127TCT (1009G>T 1011A>T) ACA128CCT (1012A>C 1014A>T) GAC129CGT (1015G>C 1016A>G 1017C>T) GAC130ATC (1018G>A 1019A>T) TTA131TAC (1022T>A 1023A>C) CTC132CCC (1025T>C) CTC133GAG (1027C>G 1028T>A 1029C>G) CTC134ATC (1030C>A) TCT135GAG (1033T>G 1034C>A 1035T>G) GAA136GAG (1038A>G) CCC137CCG (1041C>G) ACG138CCG (1042A>C) ACG138_CCC139insACTTGG (1044_1045insACTTGG) CCC139CCG (1047C>G) CCG140GAA (1048C>G 1049C>A 1050G>A) TAT142CAA (1054T>C 1056T>A) CCG143CCT (1059G>T) GCG144GTT (1061C>T 1062G>T) GCA145CCC (1063G>C 1065A>C) CTG146del (1066_1068delCTG) CTG150TAT (1078C>T 1079T>A 1080G>T) GCC151CCA (1081G>C 1083C>A) CCT152GCA (1084C>G 1086T>A) CAG153_GCG154insGGT (1089_1090insGGT) GCG154GCT (1092G>T) ATC155GTG (1093A>G 1095C>G) GGA156AGG (1096G>A 1098A>G) CCG157GGA (1099C>G 1100C>G 1101G>A) CCG158CCC (1104G>C) TCA159TCT (1107A>T) GGC160GCC (1109G>C) CAG161CCT (1112A>C 1113G>T) ATG162del (1114_1116delATG) CCC163CCT (1119C>T) GAT164GGA (1121A>G 1122T>A) AGT165GCT (1123A>G 1124G>C) AGC166CCG (1126A>C 1127G>C 1128C>G) GAT167GTG (1130A>T 1131T>G) CCT168GTG (1132C>G 1133C>T 1134T>G) GGG170GGA (1140G>A) CCA171CCT (1143A>T) GCC172GCT (1146C>T) GCT173GCC (1149T>C) ACC175ACT (1155C>T) AGG176CGG (1156A>C) AGT177AGC (1161T>C) CGC178CGG (1164C>G) CGT179AGA (1165C>A 1167T>A) GCC180GGC (1169C>G) CGC181GCC (1171C>G 1172G>C) AGT182ACC (1175G>C 1176T>C) CCA183CCG (1179A>G) GCA184GAG (1181C>A 1182A>G) GAC185_TCG187del (1183_1191delGACAACTCG) GGT188CGG (1192G>C 1194T>G) CCT189ACA (1195C>A 1197T>A) TCC191GAG (1201T>G 1202C>A 1203C>G) ACT192ATC (1205C>T 1206T>C) GTG193GCG (1208T>C) ATT194ATA (1212T>A) TTG195TTA (1215G>A) CCC196CCG (1218C>G) CTC197CTG (1221C>G) CGA198CGC (1224A>C) GCC199ACC (1225G>A) ATA200TAT (1228A>T 1229T>A 1230A>T) GGA201GGC (1233A>C) CCC202CCT (1236C>T) CCG203CCC (1239G>C) GCC204del (1240_1242delGCC) GAG205ATG (1243G>A 1244A>T) CCC206CCA (1248C>A) AAT207GGG (1249A>G 1250A>G 1251T>G) GGC208_CTG209insCAA (1254_1255insCAA) CTG209TTG (1255C>T) GTC210CAG (1258G>C 1259T>A 1260C>G) CCT211CCC (1263T>C) CTA212CTC (1266A>C) CAA213CAG (1269A>G) CCT216CCC (1278T>C)
pol polyprotein (NP_056790.1)	394	1166	66.3%	2280	44.9%	748 (92.9%)	371 (46.1%)	32/25/0/0	0
Protein mutations:	P399E (3388C>G 3389C>A 3390A>G) A403K (3400G>A 3401C>A 3402T>A) M406V (3409A>G 3411G>C) K407Q (3412A>C 3414A>G) V410A (3422T>C 3423T>C) P414A (3433C>G) R415K (3437G>A) S436T (3499T>A) S448K (3536G>A 3537C>A) I449G (3538A>G 3539T>G 3540C>G) P450G (3541C>G 3542C>G 3543T>A) I452S (3547A>T 3548T>C 3549T>C) T454A (3553A>G) E455P (3556G>C 3557A>C 3558G>T) Q459K (3568C>A) H463A (3580C>G 3581A>C 3582C>T) L479V (3628C>G 3630C>A) I487V (3652A>G 3654A>G) A491K (3664G>A 3665C>A 3666C>G) T525V (3766A>G 3767C>T 3768C>A) V530I (3781G>A 3783T>C) L535I (3796C>A 3798C>A) L537V (3802C>G) V549I (3838G>A 3840G>A) S554P (3853T>C) S556A (3859A>G 3860G>C 3861C>A) S559N (3869G>A) N583T (3941A>C 3942T>A) S587T (3952T>A 3954G>T) V593A (3971T>C 3972C>T) V602E (3998T>A 3999C>A) S604T (4003T>A 4005G>T) E605D (4008A>T) A606E (4010C>A 4011C>A) T607del (4012_4014delACC) V609_H610insT (4020_4021insACT) R611D (4024A>G 4025G>A 4026G>T) S613H (4030T>C 4031C>A 4032A>T) E614Q (4033G>C) I615L (4036A>C 4038C>A) A617I (4042G>A 4043C>T 4044C>T) T622V (4057A>G 4058C>T 4059T>C) R624K (4063C>A 4064G>A 4065A>G) E627T (4072G>A 4073A>C) Q629I (4078C>A 4079A>T) P632T (4087C>A 4089C>T) G633_V634insE (4092_4093insGAA) P635L (4097C>T) Y638F (4106A>T 4107T>C) F644Y (4124T>A 4125C>T) I645V (4126A>G 4128C>G) T646V (4129A>G 4130C>T) R651M (4145G>T 4146A>G) P655A (4156C>G 4158G>A) I656V (4159A>G 4161C>G) K660T (4172A>C 4173G>C) V663I (4180G>A 4182A>C) V680M (4231G>A 4233A>G) N693S (4270A>T 4271A>C) I709V (4318A>G 4320T>A) K725R (4367A>G 4368A>G) D726E (4371T>A) A735S (4396G>A 4397C>G) I740L (4411A>T 4413C>A) R744K (4424G>A 4425G>A) V746L (4429G>C 4431C>A) R756K (4460G>A 4461G>A) G757A (4463G>C 4464A>C) S758K (4466G>A 4467T>A) N759D (4468A>G 4470C>T) P760L (4472C>T 4473T>C) V761I (4474G>A 4476G>A) A762S (4477G>T 4479C>T) T763R (4481C>G 4482T>A) R766Q (4490G>A) R767M (4493G>T) E770R (4501G>C 4502A>G) A771V (4505C>T) L777Q (4523T>A) S778A (4525T>G 4527G>T) T779V (4528A>G 4529C>T 4530C>T) R780N (4532G>A 4533A>C) V781L (4534G>C 4536G>T) A783P (4540G>C 4542A>T) G784I (4543G>A 4544G>T) T785I (4547C>T 4548T>A) T786E (4549A>G 4550C>A) K787T (4553A>C 4554A>G) Q789K (4558C>A) E790A (4562A>C 4563G>C) I792del (4567_4569delATC) A795_T799del (4576_4590delGCTCAAGAAAAGACC) P801del (4594_4596delCCG) E803Q (4600G>C) L804Y (4603C>T 4604T>A) P806L (4610C>T 4611T>A) D807E (4614C>A) R808D (4615C>G 4616G>A 4617G>C) G809W (4618G>T 4620A>G) K810Q (4621A>C) F812del (4627_4629delTTC) R815K (4636C>A 4637G>A) L816I (4639T>A) H817D (4642C>G 4644T>C) L819F (4650A>C) T820S (4651A>T) H821E (4654C>G 4656C>G) H821_L822insTPEGTCYTS (4656_4657insACTCCGGAGGGGACCTGCTATACCTCA) L822Y (4658T>A 4659A>T) P824K (4663C>A 4664C>A 4665A>G) K826I (4670A>T 4671G>C) L828P (4676T>C) Q829H (4680A>C) L830_V831del (4681_4686delCTAGTG) N832K (4689C>A) R833E (4690C>G 4691G>A 4692T>A) T834G (4693A>G 4694C>G 4695C>G) S835L (4696A>T 4697G>T 4698C>A) L836E (4699C>G 4700T>A 4701C>A) L837Y (4702C>T 4703T>A 4704C>T) I838V (4705A>G) P839Q (4709C>A 4710G>A) N840Q (4711A>C 4713C>G) L841I (4714C>A 4716C>A) Q842H (4719A>T) S843R (4720T>C 4721C>G) A844L (4723G>C 4724C>T 4725A>C) V845T (4726G>A 4727T>C 4728T>C) R846H (4730G>A) E847L (4732G>C 4733A>T) V848G (4736T>G 4737C>A) S850K (4742G>A 4743T>A) Q851H (4746G>C) C852L (4747T>C 4748G>T 4749T>G) A854Q (4753G>C 4754C>A 4755T>G) C855L (4757G>T 4758T>G) A856V (4760C>T) M857R (4763T>G 4764G>A) N859S (4768A>T 4769A>C 4770T>C) A860P (4771G>C 4773G>T) V861Y (4774G>T 4775T>A 4776C>T) T862H (4777A>C 4778C>A 4779C>T) T863V (4780A>G 4781C>T 4782C>T) Y864L (4783T>C 4784A>T 4785C>G) E866L (4789G>C 4790A>T 4791G>A) T867P (4792A>C 4794C>A) K869V (4798A>G 4799A>T 4800A>G) R870A (4801A>G 4802G>C 4803G>T) Q871D (4804C>G 4806A>C) R872S (4807C>T 4808G>C 4809A>G) G873V (4811G>T 4812A>G) D874V (4814A>T 4815T>C) R875K (4816C>A 4817G>A) P876H (4820C>A 4821C>T) G877C (4822G>T 4824C>T) Y879P (4828T>C 4829A>C) W880C (4833G>C) E881Q (4834G>C) V882L (4837G>C 4839A>G) D883V (4841A>T 4842C>T) F884N (4843T>A 4844T>A 4845C>T) T885A (4846A>G 4848A>T) E886_I887del (4849_4854delGAAATA) K888N (4857G>T) G890S (4861G>T 4862G>C 4863T>C) Y892I (4867T>A 4868A>T 4869T>A) G893P (4870G>C 4871G>C 4872A>T) N894P (4873A>C 4874A>C 4875C>A) K895G (4876A>G 4877A>G 4878G>A) Y896K (4879T>A 4881T>G) L897R (4882C>A 4883T>G 4884G>A) V899R (4888G>A 4889T>G 4890A>G) F900G (4891T>G 4892T>G 4893C>A) I901S (4895T>G 4896A>C) D902H (4897G>C 4899T>C) T903P (4900A>C 4902T>A) F904G (4903T>G 4904T>G) S905A (4906T>G 4908C>T) G906H (4909G>C 4910G>A 4911A>C) V908E (4916T>A) E909V (4919A>T 4920A>G) A910D (4922C>A 4923T>C) P912del (4927_4929delCCT) K914E (4933A>G 4935A>G) T915V (4936A>G 4937C>T 4938T>A) E916K (4939G>A 4941A>G) T917P (4942A>C) L919K (4948C>A 4949T>A) I920Y (4951A>T 4952T>A) V921G (4955T>G 4956C>A) C922N (4957T>A 4958G>A 4959T>C) K924Y (4963A>T 4965A>T) I925L (4966A>C) E927V (4973A>T 4974A>T) E928F (4975G>T 4976A>T 4977A>T) I929V (4978A>G 4980T>A) L930D (4981C>G 4982T>A 4983A>C) P931T (4984C>A) R932F (4987C>T 4988G>T 4989C>T) F933S (4991T>C 4992C>A) I935W (4996A>T 4997T>G 4998C>G) P936V (4999C>G 5000C>T 5001T>A) K937E (5002A>G) V938A (5006T>C 5007A>T) L939Y (5008C>T 5009T>A 5010C>T) G940P (5011G>C 5012G>C 5013G>T) S941T (5014T>A 5016A>T) D942K (5017G>A 5019C>G) N943K (5022T>A) G944E (5024G>A 5025C>G) P945T (5026C>A 5028G>T) P945_A946insS (5028_5029insTCA) A946T (5029G>A) F947L (5034T>G) Q950K (5041C>A 5043G>A) Q950_V951insK (5043_5044insAAA) V951I (5044G>A) S952L (5047A>C 5048G>T 5049T>G) Q953E (5050C>G) G954E (5054G>A) L955I (5056C>A 5058G>T) A956F (5059G>T 5060C>T 5061C>T) T957P (5062A>C 5064T>G) Q958R (5065C>A 5066A>G) L959F (5068C>T 5070G>T) N962P (5077A>C 5078A>C) W963K (5080T>A 5081G>A) K964V (5083A>G 5084A>T 5085G>A) L965I (5086T>A 5088A>C) H966G (5089C>G 5090A>G 5091T>G) C967S (5093G>C 5094T>A) A968D (5096C>A 5097G>C) Y969N (5098T>A) R970G (5101A>G 5103A>T) Q972A (5107C>G 5108A>C 5109G>T) S973F (5110A>T 5111G>T 5112C>T) S974V (5113T>G 5114C>T 5115A>T) G975A (5117G>C 5118T>C) V977_E978insS (5124_5125insAGT) E978Q (5125G>C 5127A>G) R979G (5128A>G) M980L (5131A>C) N981A (5134A>G 5135A>C) R982K (5138G>A 5139A>G) T983I (5141C>T) I984L (5143A>T 5145T>G) I984_K985insGIDW (5145_5146insGGGATTGATTGG) E986L (5149G>C 5150A>T) T987H (5152A>C 5153C>A 5154C>T) L988C (5156T>G 5157G>T) T989A (5158A>G 5160C>A) K990Y (5161A>T 5163A>C) L991R (5164T>A 5165T>G) A992P (5167G>C) L993Q (5170T>C 5171T>A) E994S (5173G>A 5174A>G 5175G>C) T995S (5176A>T 5178C>A) G997Q (5182G>C 5183G>A 5184A>G) K998V (5185A>G 5186A>T) D999E (5190C>G) W1000R (5191T>A) V1001M (5194G>A) T1002N (5198C>A 5199C>T) L1003R (5200C>A 5201T>G 5202C>A) L1004T (5203C>A 5204T>C 5205T>C) P1005I (5206C>A 5207C>T 5208C>T) L1006K (5209T>A 5210T>A) A1007E (5213C>A 5214G>A) L1008T (5215C>A 5216T>C 5217G>C) R1010T (5222G>C 5223G>C) A1011K (5224G>A 5225C>A 5226C>A) R1012L (5227A>T 5228G>T) N1013T (5231A>C 5232T>C) P1015_G1016del (5236_5241delCCTGGC) R1017E (5242C>G 5243G>A) F1018T (5245T>A 5246T>C) L1020I (5251T>A 5253A>T) T1021N (5255C>A) P1022D (5257C>G 5258C>A) Y1023W (5261A>G 5262T>G) E1024M (5263G>A 5264A>T 5265A>G) I1025A (5266A>G 5267T>C) Y1027L (5272T>C 5273A>T 5274T>G) G1028_P1030del (5275_5283delGGAGGACCA) P1032F (5287C>T 5288C>T 5289C>T) I1033V (5290A>G 5292A>G) L1034_E1035insFRVRN (5295_5296insTTTAGGGTGAGGAAC) E1035T (5296G>A 5297A>C 5298G>C) S1036P (5299T>C) E1038Q (5305G>C 5307A>G) T1039F (5308A>T 5309C>T) L1040G (5311T>G 5312T>G) G1041L (5314G>C 5315G>T 5316T>G) P1042T (5317C>A) D1043P (5320G>C 5321A>C 5322T>C) D1044Y (5323G>T) R1045E (5326A>G 5327G>A) F1046L (5331T>G) P1048Y (5335C>T 5336C>A 5337T>C) V1049G (5339T>G 5340C>G) L1050G (5341T>G 5342T>G) F1051P (5344T>C 5345T>C 5346T>C) T1052P (5347A>C 5349T>C) H1053P (5351A>C 5352C>G) K1055_A1056del (5356_5361delAAGGCT) L1057A (5362T>G 5363T>C) V1060A (5372T>C 5373A>C) R1061F (5374A>T 5375G>T 5376G>T) T1062A (5377A>G 5379C>A) Q1063H (5382A>T) I1064S (5384T>G 5385C>T) W1065A (5386T>G 5387G>C 5388G>T) Q1067V (5392C>G 5393A>T) I1068L (5395A>C 5397C>G) K1069_E1070del (5398_5403delAAAGAG) V1071L (5404G>C 5406G>T) Y1072S (5408A>C 5409T>C) K1073Q (5410A>C) G1075L (5416G>T 5417G>T 5418T>G) T1076F (5419A>T 5420C>T) V1077S (5422G>T 5423T>C 5424A>T) T1078R (5426C>G 5427A>G) I1079L (5428A>C) P1080K (5431C>A 5432C>A 5433T>G) H1081A (5434C>G 5435A>C 5436C>G) P1082L (5438C>T 5439G>C) F1083E (5440T>G 5441T>A 5442C>G) Q1084W (5443C>T 5444A>G) G1086R (5449G>A) D1087Q (5452G>C 5454T>G) Q1088R (5456A>G) V1089A (5459T>C) L1090W (5461C>T 5462T>G 5463T>G) V1091K (5464G>A 5465T>A 5466C>G) R1092Q (5467A>C 5468G>A 5469A>G) R1093L (5471G>T) H1094R (5474A>G 5475T>G) R1095E (5476C>G 5477G>A 5478A>G) P1096A (5479C>G) S1097Y (5482A>T 5483G>A) S1098_L1099insGGDLQ (5487_5488insGGAGGAGACTTGCAA) L1099V (5488C>G) E1100P (5491G>C 5492A>C 5493G>A) P1101H (5495C>A) W1103F (5501G>T 5502G>C) K1104Q (5503A>C) G1105V (5507G>T 5508C>T) P1106G (5509C>G 5510C>G) Y1107D (5512T>G 5514C>T) L1108S (5515C>T 5516T>C 5517G>A) L1110Y (5522T>A 5523G>T) L1111V (5524C>G 5526G>T) T1112R (5528C>G 5529T>A) T1113R (5530A>C 5531C>G) P1114H (5534C>A 5535G>C) T1115R (5536A>C 5537C>G 5538C>T) V1117G (5543T>G) K1118N (5547A>C) V1119L (5548G>C) D1120E (5553T>G) G1121_I1122del (5554_5559delGGTATT) A1123T (5560G>A) A1124R (5563G>C 5564C>G 5565C>G) V1126K (5569G>A 5570T>A 5571C>G) H1127G (5572C>G 5573A>G 5574T>A) A1128P (5575G>C) S1129Y (5579C>A) H1130L (5582A>T) L1131V (5584C>G 5586C>A) K1132L (5587A>C 5588A>T 5589A>T) P1133L (5590C>T 5591C>T 5592T>G) A1134T (5593G>A 5595A>C) P1135T (5596C>A) S1137T (5602T>A) P1139V (5608C>G 5609C>T 5610A>G) D1140K (5611G>A 5613T>A) E1141V (5615A>T 5616G>C) E1141_S1142insEGIP (5617T>G 5617_5618insAAGGAATCCCCA) S1142T (5617_5618insAAGGAATCCCCA) E1144I (5623G>A 5624A>T 5625G>C) L1145H (5627T>A 5628G>T) E1146A (5630A>C) K1147S (5632A>T 5633A>C 5634G>C) T1148H (5635A>C 5636C>A 5637T>C) D1149V (5639A>T) H1150K (5641C>A 5643T>G) L1152A (5647C>G 5648T>C 5649T>G) K1153P (5650A>C 5651A>C 5652G>A) L1154P (5654T>C 5655G>T) R1155P (5657G>C 5658T>C) I1156D (5659A>G 5660T>A) R1157S (5662C>T 5663G>C) R1158G (5665C>G) R1159W (5668C>T) R1160K (5671C>A 5672G>A 5673G>A) D1161A (5675A>C) S1163K (5680T>A 5681C>A 5682T>G) A1164T (5683G>A 5685A>T) K1165E (5686A>G) *1166N (5689T>A 5691A>T)
Codon mutations:	CTA397CTG (3384A>G) ACC398ACG (3387C>G) CCA399GAG (3388C>G 3389C>A 3390A>G) GCC400GCA (3393C>A) CGA401CGG (3396A>G) GCT403AAA (3400G>A 3401C>A 3402T>A) GTT405GTA (3408T>A) ATG406GTC (3409A>G 3411G>C) AAA407CAG (3412A>C 3414A>G) ATC408ATA (3417C>A) CCT409CCG (3420T>G) GTT410GCC (3422T>C 3423T>C) CCT411CCA (3426T>A) ACG412ACC (3429G>C) ACC413ACA (3432C>A) CCC414GCC (3433C>G) AGA415AAA (3437G>A) CAG416CAA (3441G>A) GTC417GTG (3444C>G) CGT418AGA (3445C>A 3447T>A) GAA419GAG (3450A>G) CTA421TTG (3454C>T 3456A>G) GGC422GGG (3459C>G) ACT423ACA (3462T>A) GCC424GCT (3465C>T) TTC426TTT (3471C>T) AGG428AGA (3477G>A) CTC429CTG (3480C>G) CCT432CCG (3489T>G) GCT435GCG (3498T>G) TCC436ACC (3499T>A) CTG437TTA (3502C>T 3504G>A) GCT438GCA (3507T>A) GCA439GCC (3510A>C) CCC440CCA (3513C>A) TTG441CTC (3514T>C 3516G>C) CCC443CCG (3522C>G) ACA445ACC (3528A>C) GAG447GAA (3534G>A) AGC448AAA (3536G>A 3537C>A) ATC449GGG (3538A>G 3539T>G 3540C>G) CCT450GGA (3541C>G 3542C>G 3543T>A) TTT451TTC (3546T>C) ATT452TCC (3547A>T 3548T>C 3549T>C) ACT454GCT (3553A>G) GAG455CCT (3556G>C 3557A>C 3558G>T) GAA456GAG (3561A>G) CAT457CAC (3564T>C) CAG459AAG (3568C>A) GCT460GCA (3573T>A) GAC462GAT (3579C>T) CAC463GCT (3580C>G 3581A>C 3582C>T) ATA464ATC (3585A>C) AAA466AAG (3591A>G) TTG468CTG (3595T>C) TCA470AGC (3601T>A 3602C>G 3603A>C) GCC471GCA (3606C>A) GCA473GCT (3612A>T) TTG474CTG (3613T>C) CCA477CCT (3624A>T) CTC479GTA (3628C>G 3630C>A) ACC480ACT (3633C>T) AAG481AAA (3636G>A) CCA482CCC (3639A>C) TTC483TTT (3642C>T) ACT484ACC (3645T>C) CTA485CTT (3648A>T) ATA487GTG (3652A>G 3654A>G) AGA490CGT (3661A>C 3663A>T) GCC491AAG (3664G>A 3665C>A 3666C>G) GGC492GGA (3669C>A) GTG493GTA (3672G>A) CGG495CGA (3678G>A) GTG497GTT (3684G>T) CTC498TTA (3685C>T 3687C>A) ACT499ACC (3690T>C) CAG500CAA (3693G>A) ACT501ACC (3696T>C) TTA502CTA (3697T>C) CCC504CCA (3705C>A) CGG506AGG (3709C>A) CGG507AGA (3712C>A 3714G>A) CCA508CCT (3717A>T) GTA509GTT (3720A>T) GCA510GCC (3723A>C) TAT511TAC (3726T>C) CTA512CTG (3729A>G) AAA514AAG (3735A>G) AAA515AAG (3738A>G) CTG516CTT (3741G>T) CCG518CCT (3747G>T) GTG519GTA (3750G>A) AGC521AGT (3756C>T) GGG522GGT (3759G>T) CCA524CCC (3765A>C) ACC525GTA (3766A>G 3767C>T 3768C>A) TGC526TGT (3771C>T) AAA528AAG (3777A>G) GCG529GCT (3780G>T) GTT530ATC (3781G>A 3783T>C) GCA532GCT (3789A>T) GTA533GTG (3792A>G) GCA534GCC (3795A>C) CTC535ATA (3796C>A 3798C>A) CTT536CTG (3801T>G) CTC537GTC (3802C>G) AAA538AAG (3807A>G) GAT541GAC (3816T>C) AAG542AAA (3819G>A) TTA543TTG (3822A>G) ACC544ACT (3825C>T) CAA547CAG (3834A>G) GTG549ATA (3838G>A 3840G>A) GTG551GTA (3846G>A) ATT552ATA (3849T>A) GCT553GCC (3852T>C) TCC554CCC (3853T>C) AGC556GCA (3859A>G 3860G>C 3861C>A) CTC557TTG (3862C>T 3864C>G) GAA558GAG (3867A>G) AGC559AAC (3869G>A) GTG561GTT (3876G>T) CAA563CAG (3882A>G) CCC565CCA (3888C>A) CGG567CGA (3894G>A) AAT571AAC (3906T>C) AGA573CGC (3910A>C 3912A>C) ACT575ACC (3918T>C) CAT576CAC (3921T>C) TAC577TAT (3924C>T) CAG578CAA (3927G>A) CTG581CTT (3936G>T) TTA582CTC (3937T>C 3939A>C) AAT583ACA (3941A>C 3942T>A) GAA584GAG (3945A>G) GTA586GTC (3951A>C) TCG587ACT (3952T>A 3954G>T) TTT588TTC (3957T>C) GCG589GCT (3960G>T) CCC590CCA (3963C>A) CCT591CCA (3966T>A) GCT592GCC (3969T>C) GTC593GCT (3971T>C 3972C>T) CTA594CTC (3975A>C) CCA596CCT (3981A>T) GCT597GCC (3984T>C) ACC598ACT (3987C>T) CTA599CTT (3990A>T) CTT600CTG (3993T>G) CCA601CCT (3996A>T) GTC602GAA (3998T>A 3999C>A) TCG604ACT (4003T>A 4005G>T) GAA605GAT (4008A>T) GCC606GAA (4010C>A 4011C>A) ACC607del (4012_4014delACC) GTG609_CAC610insACT (4020_4021insACT) CAC610CAT (4023C>T) AGG611GAT (4024A>G 4025G>A 4026G>T) TCA613CAT (4030T>C 4031C>A 4032A>T) GAA614CAA (4033G>C) ATC615CTA (4036A>C 4038C>A) CTC616TTG (4039C>T 4041C>G) GCC617ATT (4042G>A 4043C>T 4044C>T) GAA618GAG (4047A>G) GAA619GAG (4050A>G) GGA621GGG (4056A>G) ACT622GTC (4057A>G 4058C>T 4059T>C) CGA623CGC (4062A>C) CGA624AAG (4063C>A 4064G>A 4065A>G) CTA626CTT (4071A>T) GAA627ACA (4072G>A 4073A>C) CAA629ATA (4078C>A 4079A>T) CCA630CCG (4083A>G) TTG631CTG (4084T>C) CCC632ACT (4087C>A 4089C>T) GGG633GGA (4092G>A) GGG633_GTG634insGAA (4092_4093insGAA) CCA635CTA (4097C>T) TAT638TTC (4106A>T 4107T>C) ACA639ACT (4110A>T) GGT641GGA (4116T>A) AGT643AGC (4122T>C) TTC644TAT (4124T>A 4125C>T) ATC645GTG (4126A>G 4128C>G) ACG646GTG (4129A>G 4130C>T) AAA649AAG (4140A>G) CGG650AGG (4141C>A) AGA651ATG (4145G>T 4146A>G) GCA652GCT (4149A>T) GCC654GCG (4155C>G) CCG655GCA (4156C>G 4158G>A) ATC656GTG (4159A>G 4161C>G) GTA657GTG (4164A>G) GAT658GAC (4167T>C) GGC659GGG (4170C>G) AAG660ACC (4172A>C 4173G>C) CGG661CGC (4176G>C) GTA663ATC (4180G>A 4182A>C) GCT665GCC (4188T>C) CCA669CCG (4200A>G) GGT671GGA (4206T>A) ACG672ACT (4209G>T) GCC674GCG (4215C>G) CAG675CAA (4218G>A) GAA678GAG (4227A>G) CTA679CTC (4230A>C) GTA680ATG (4231G>A 4233A>G) TTG682CTC (4237T>C 4239G>C) CAG684CAA (4245G>A) GCA685GCT (4248A>T) TTA686TTG (4251A>G) CGC687CGG (4254C>G) GGA691GGG (4266A>G) AAC693TCC (4270A>T 4271A>C) ATC694ATA (4275C>A) ATC696ATT (4281C>T) TAC697TAT (4284C>T) GCT703GCC (4302T>C) GCC705GCG (4308C>G) GCT707GCA (4314T>A) CAT708CAC (4317T>C) ATT709GTA (4318A>G 4320T>A) CAT710CAC (4323T>C) GCA712GCC (4329A>C) ATA713ATC (4332A>C) AAG715AAA (4338G>A) CAG716CAA (4341G>A) CTG719TTG (4348C>T) CTC720CTT (4353C>T) ACT721ACC (4356T>C) TCT722TCA (4359T>A) GCT723GCA (4362T>A) GGA724GGG (4365A>G) AAA725AGG (4367A>G 4368A>G) GAT726GAA (4371T>A) ATC727ATA (4374C>A) AAA728AAG (4377A>G) TTG734CTA (4393T>C 4395G>A) GCC735AGC (4396G>A 4397C>G) CTG736CTA (4401G>A) CTA737TTA (4402C>T) GAG738GAA (4407G>A) ATC740TTA (4411A>T 4413C>A) CTC742TTG (4417C>T 4419C>G) CCT743CCA (4422T>A) AGG744AAA (4424G>A 4425G>A) CGG745AGG (4426C>A) GTC746CTA (4429G>C 4431C>A) GCC747GCT (4434C>T) ATC749ATA (4440C>A) GGC753GGA (4452C>A) CAC754CAT (4455C>T) AGG756AAA (4460G>A 4461G>A) GGA757GCC (4463G>C 4464A>C) AGT758AAA (4466G>A 4467T>A) AAC759GAT (4468A>G 4470C>T) CCT760CTC (4472C>T 4473T>C) GTG761ATA (4474G>A 4476G>A) GCC762TCT (4477G>T 4479C>T) ACT763AGA (4481C>G 4482T>A) CGG766CAG (4490G>A) AGG767ATG (4493G>T) GCC768GCT (4497C>T) GAG770CGG (4501G>C 4502A>G) GCT771GTT (4505C>T) GCA772GCC (4509A>C) CAA774CAG (4515A>G) GCC775GCA (4518C>A) CTG777CAG (4523T>A) TCG778GCT (4525T>G 4527G>T) ACC779GTT (4528A>G 4529C>T 4530C>T) AGA780AAC (4532G>A 4533A>C) GTG781CTT (4534G>C 4536G>T) GCA783CCT (4540G>C 4542A>T) GGA784ATA (4543G>A 4544G>T) ACT785ATA (4547C>T 4548T>A) ACA786GAA (4549A>G 4550C>A) AAA787ACG (4553A>C 4554A>G) CCT788CCC (4557T>C) CAA789AAA (4558C>A) GAG790GCC (4562A>C 4563G>C) ATC792del (4567_4569delATC) GAG793GAA (4572G>A) GCT795_ACC799del (4576_4590delGCTCAAGAAAAGACC) AGG800AGA (4593G>A) CCG801del (4594_4596delCCG) AGG802CGA (4597A>C 4599G>A) GAG803CAG (4600G>C) CTC804TAC (4603C>T 4604T>A) CCT806CTA (4610C>T 4611T>A) GAC807GAA (4614C>A) CGG808GAC (4615C>G 4616G>A 4617G>C) GGA809TGG (4618G>T 4620A>G) AAA810CAA (4621A>C) GAA811GAG (4626A>G) TTC812del (4627_4629delTTC) ATT813ATA (4632T>A) AAG814AAA (4635G>A) CGG815AAG (4636C>A 4637G>A) TTA816ATA (4639T>A) CAT817GAC (4642C>G 4644T>C) TTA819TTC (4650A>C) ACT820TCT (4651A>T) CAC821GAG (4654C>G 4656C>G) CAC821_TTA822insACTCCGGAGGGGACCTGCTATACCTCA (4656_4657insACTCCGGAGGGGACCTGCTATACCTCA) TTA822TAT (4658T>A 4659A>T) GGA823GGG (4662A>G) CCA824AAG (4663C>A 4664C>A 4665A>G) AAG826ATC (4670A>T 4671G>C) CTT827CTG (4674T>G) CTC828CCC (4676T>C) CAA829CAC (4680A>C) CTA830_GTG831del (4681_4686delCTAGTG) AAC832AAA (4689C>A) CGT833GAA (4690C>G 4691G>A 4692T>A) ACC834GGG (4693A>G 4694C>G 4695C>G) AGC835TTA (4696A>T 4697G>T 4698C>A) CTC836GAA (4699C>G 4700T>A 4701C>A) CTC837TAT (4702C>T 4703T>A 4704C>T) ATC838GTC (4705A>G) CCG839CAA (4709C>A 4710G>A) AAC840CAG (4711A>C 4713C>G) CTC841ATA (4714C>A 4716C>A) CAA842CAT (4719A>T) TCT843CGT (4720T>C 4721C>G) GCA844CTC (4723G>C 4724C>T 4725A>C) GTT845ACC (4726G>A 4727T>C 4728T>C) CGC846CAC (4730G>A) GAA847CTA (4732G>C 4733A>T) GTC848GGA (4736T>G 4737C>A) ACC849ACT (4740C>T) AGT850AAA (4742G>A 4743T>A) CAG851CAC (4746G>C) TGT852CTG (4747T>C 4748G>T 4749T>G) GCT854CAG (4753G>C 4754C>A 4755T>G) TGT855TTG (4757G>T 4758T>G) GCC856GTC (4760C>T) ATG857AGA (4763T>G 4764G>A) ACT858ACA (4767T>A) AAT859TCC (4768A>T 4769A>C 4770T>C) GCG860CCT (4771G>C 4773G>T) GTC861TAT (4774G>T 4775T>A 4776C>T) ACC862CAT (4777A>C 4778C>A 4779C>T) ACC863GTT (4780A>G 4781C>T 4782C>T) TAC864CTG (4783T>C 4784A>T 4785C>G) AGA865AGG (4788A>G) GAG866CTA (4789G>C 4790A>T 4791G>A) ACC867CCA (4792A>C 4794C>A) AAA869GTG (4798A>G 4799A>T 4800A>G) AGG870GCT (4801A>G 4802G>C 4803G>T) CAA871GAC (4804C>G 4806A>C) CGA872TCG (4807C>T 4808G>C 4809A>G) GGA873GTG (4811G>T 4812A>G) GAT874GTC (4814A>T 4815T>C) CGA875AAA (4816C>A 4817G>A) CCC876CAT (4820C>A 4821C>T) GGC877TGT (4822G>T 4824C>T) TAC879CCC (4828T>C 4829A>C) TGG880TGC (4833G>C) GAG881CAG (4834G>C) GTA882CTG (4837G>C 4839A>G) GAC883GTT (4841A>T 4842C>T) TTC884AAT (4843T>A 4844T>A 4845C>T) ACA885GCT (4846A>G 4848A>T) GAA886_ATA887del (4849_4854delGAAATA) AAG888AAT (4857G>T) GGT890TCC (4861G>T 4862G>C 4863T>C) CGG891AGA (4864C>A 4866G>A) TAT892ATA (4867T>A 4868A>T 4869T>A) GGA893CCT (4870G>C 4871G>C 4872A>T) AAC894CCA (4873A>C 4874A>C 4875C>A) AAG895GGA (4876A>G 4877A>G 4878G>A) TAT896AAG (4879T>A 4881T>G) CTG897AGA (4882C>A 4883T>G 4884G>A) TTA898CTA (4885T>C) GTA899AGG (4888G>A 4889T>G 4890A>G) TTC900GGA (4891T>G 4892T>G 4893C>A) ATA901AGC (4895T>G 4896A>C) GAT902CAC (4897G>C 4899T>C) ACT903CCA (4900A>C 4902T>A) TTC904GGC (4903T>G 4904T>G) TCC905GCT (4906T>G 4908C>T) GGA906CAC (4909G>C 4910G>A 4911A>C) GTA908GAA (4916T>A) GAA909GTG (4919A>T 4920A>G) GCT910GAC (4922C>A 4923T>C) TTT911TTC (4926T>C) CCT912del (4927_4929delCCT) ACC913ACT (4932C>T) AAA914GAG (4933A>G 4935A>G) ACT915GTA (4936A>G 4937C>T 4938T>A) GAA916AAG (4939G>A 4941A>G) ACG917CCG (4942A>C) GCC918GCT (4947C>T) CTA919AAA (4948C>A 4949T>A) ATC920TAC (4951A>T 4952T>A) GTC921GGA (4955T>G 4956C>A) TGT922AAC (4957T>A 4958G>A 4959T>C) AAA924TAT (4963A>T 4965A>T) ATA925CTA (4966A>C) TTA926TTG (4971A>G) GAA927GTT (4973A>T 4974A>T) GAA928TTT (4975G>T 4976A>T 4977A>T) ATT929GTA (4978A>G 4980T>A) CTA930GAC (4981C>G 4982T>A 4983A>C) CCC931ACC (4984C>A) CGC932TTT (4987C>T 4988G>T 4989C>T) TTC933TCA (4991T>C 4992C>A) GGG934GGA (4995G>A) ATC935TGG (4996A>T 4997T>G 4998C>G) CCT936GTA (4999C>G 5000C>T 5001T>A) AAG937GAG (5002A>G) GTA938GCT (5006T>C 5007A>T) CTC939TAT (5008C>T 5009T>A 5010C>T) GGG940CCT (5011G>C 5012G>C 5013G>T) TCA941ACT (5014T>A 5016A>T) GAC942AAG (5017G>A 5019C>G) AAT943AAA (5022T>A) GGC944GAG (5024G>A 5025C>G) CCG945ACT (5026C>A 5028G>T) CCG945_GCC946insTCA (5028_5029insTCA) GCC946ACC (5029G>A) TTT947TTG (5034T>G) GTT948GTG (5037T>G) CAG950AAA (5041C>A 5043G>A) CAG950_GTA951insAAA (5043_5044insAAA) GTA951ATA (5044G>A) AGT952CTG (5047A>C 5048G>T 5049T>G) CAG953GAG (5050C>G) GGA954GAA (5054G>A) CTG955ATT (5056C>A 5058G>T) GCC956TTT (5059G>T 5060C>T 5061C>T) ACT957CCG (5062A>C 5064T>G) CAA958AGA (5065C>A 5066A>G) CTG959TTT (5068C>T 5070G>T) GGG960GGA (5073G>A) AAT962CCT (5077A>C 5078A>C) TGG963AAG (5080T>A 5081G>A) AAG964GTA (5083A>G 5084A>T 5085G>A) TTA965ATC (5086T>A 5088A>C) CAT966GGG (5089C>G 5090A>G 5091T>G) TGT967TCA (5093G>C 5094T>A) GCG968GAC (5096C>A 5097G>C) TAT969AAT (5098T>A) AGA970GGT (5101A>G 5103A>T) CCC971CCA (5106C>A) CAG972GCT (5107C>G 5108A>C 5109G>T) AGC973TTT (5110A>T 5111G>T 5112C>T) TCA974GTT (5113T>G 5114C>T 5115A>T) GGT975GCC (5117G>C 5118T>C) GTA977_GAA978insAGT (5124_5125insAGT) GAA978CAG (5125G>C 5127A>G) AGA979GGA (5128A>G) ATG980CTG (5131A>C) AAC981GCC (5134A>G 5135A>C) AGA982AAG (5138G>A 5139A>G) ACA983ATA (5141C>T) ATT984TTG (5143A>T 5145T>G) ATT984_AAA985insGGGATTGATTGG (5145_5146insGGGATTGATTGG) GAG986CTG (5149G>C 5150A>T) ACC987CAT (5152A>C 5153C>A 5154C>T) TTG988TGT (5156T>G 5157G>T) ACC989GCA (5158A>G 5160C>A) AAA990TAC (5161A>T 5163A>C) TTA991AGA (5164T>A 5165T>G) GCC992CCC (5167G>C) TTA993CAA (5170T>C 5171T>A) GAG994AGC (5173G>A 5174A>G 5175G>C) ACC995TCA (5176A>T 5178C>A) GGT996GGA (5181T>A) GGA997CAG (5182G>C 5183G>A 5184A>G) AAA998GTA (5185A>G 5186A>T) GAC999GAG (5190C>G) TGG1000AGG (5191T>A) GTG1001ATG (5194G>A) ACC1002AAT (5198C>A 5199C>T) CTC1003AGA (5200C>A 5201T>G 5202C>A) CTT1004ACC (5203C>A 5204T>C 5205T>C) CCC1005ATT (5206C>A 5207C>T 5208C>T) TTA1006AAA (5209T>A 5210T>A) GCG1007GAA (5213C>A 5214G>A) CTG1008ACC (5215C>A 5216T>C 5217G>C) AGG1010ACC (5222G>C 5223G>C) GCC1011AAA (5224G>A 5225C>A 5226C>A) AGG1012TTG (5227A>T 5228G>T) AAT1013ACC (5231A>C 5232T>C) ACC1014ACA (5235C>A) CCT1015_GGC1016del (5236_5241delCCTGGC) CGG1017GAG (5242C>G 5243G>A) TTT1018ACT (5245T>A 5246T>C) GGT1019GGC (5250T>C) TTA1020ATT (5251T>A 5253A>T) ACT1021AAT (5255C>A) CCT1022GAT (5257C>G 5258C>A) TAT1023TGG (5261A>G 5262T>G) GAA1024ATG (5263G>A 5264A>T 5265A>G) ATT1025GCT (5266A>G 5267T>C) TAT1027CTG (5272T>C 5273A>T 5274T>G) GGA1028_CCA1030del (5275_5283delGGAGGACCA) CCC1032TTT (5287C>T 5288C>T 5289C>T) ATA1033GTG (5290A>G 5292A>G) CTT1034_GAG1035insTTTAGGGTGAGGAAC (5295_5296insTTTAGGGTGAGGAAC) GAG1035ACC (5296G>A 5297A>C 5298G>C) TCT1036CCT (5299T>C) GAA1038CAG (5305G>C 5307A>G) ACT1039TTT (5308A>T 5309C>T) TTG1040GGG (5311T>G 5312T>G) GGT1041CTG (5314G>C 5315G>T 5316T>G) CCC1042ACC (5317C>A) GAT1043CCC (5320G>C 5321A>C 5322T>C) GAT1044TAT (5323G>T) AGA1045GAA (5326A>G 5327G>A) TTT1046TTG (5331T>G) CCT1048TAC (5335C>T 5336C>A 5337T>C) GTC1049GGG (5339T>G 5340C>G) TTA1050GGA (5341T>G 5342T>G) TTT1051CCC (5344T>C 5345T>C 5346T>C) ACT1052CCC (5347A>C 5349T>C) CAC1053CCG (5351A>C 5352C>G) TTA1054TTG (5355A>G) AAG1055_GCT1056del (5356_5361delAAGGCT) TTA1057GCA (5362T>G 5363T>C) GTA1060GCC (5372T>C 5373A>C) AGG1061TTT (5374A>T 5375G>T 5376G>T) ACC1062GCA (5377A>G 5379C>A) CAA1063CAT (5382A>T) ATC1064AGT (5384T>G 5385C>T) TGG1065GCT (5386T>G 5387G>C 5388G>T) GAC1066GAT (5391C>T) CAG1067GTG (5392C>G 5393A>T) ATC1068CTG (5395A>C 5397C>G) AAA1069_GAG1070del (5398_5403delAAAGAG) GTG1071CTT (5404G>C 5406G>T) TAT1072TCC (5408A>C 5409T>C) AAG1073CAG (5410A>C) GGT1075TTG (5416G>T 5417G>T 5418T>G) ACC1076TTC (5419A>T 5420C>T) GTA1077TCT (5422G>T 5423T>C 5424A>T) ACA1078AGG (5426C>G 5427A>G) ATC1079CTC (5428A>C) CCT1080AAG (5431C>A 5432C>A 5433T>G) CAC1081GCG (5434C>G 5435A>C 5436C>G) CCG1082CTC (5438C>T 5439G>C) TTC1083GAG (5440T>G 5441T>A 5442C>G) CAG1084TGG (5443C>T 5444A>G) GTC1085GTG (5448C>G) GGG1086AGG (5449G>A) GAT1087CAG (5452G>C 5454T>G) CAA1088CGA (5456A>G) GTG1089GCG (5459T>C) CTT1090TGG (5461C>T 5462T>G 5463T>G) GTC1091AAG (5464G>A 5465T>A 5466C>G) AGA1092CAG (5467A>C 5468G>A 5469A>G) CGC1093CTC (5471G>T) CAT1094CGG (5474A>G 5475T>G) CGA1095GAG (5476C>G 5477G>A 5478A>G) CCC1096GCC (5479C>G) AGC1097TAC (5482A>T 5483G>A) AGC1098TCA (5485A>T 5486G>C 5487C>A) AGC1098_CTT1099insGGAGGAGACTTGCAA (5487_5488insGGAGGAGACTTGCAA) CTT1099GTT (5488C>G) GAG1100CCA (5491G>C 5492A>C 5493G>A) CCT1101CAT (5495C>A) CGG1102CGC (5499G>C) TGG1103TTC (5501G>T 5502G>C) AAA1104CAA (5503A>C) GGC1105GTT (5507G>T 5508C>T) CCA1106GGA (5509C>G 5510C>G) TAC1107GAT (5512T>G 5514C>T) CTG1108TCA (5515C>T 5516T>C 5517G>A) GTG1109GTC (5520G>C) TTG1110TAT (5522T>A 5523G>T) CTG1111GTT (5524C>G 5526G>T) ACT1112AGA (5528C>G 5529T>A) ACC1113CGC (5530A>C 5531C>G) CCG1114CAC (5534C>A 5535G>C) ACC1115CGT (5536A>C 5537C>G 5538C>T) GCG1116GCA (5541G>A) GTA1117GGA (5543T>G) AAA1118AAC (5547A>C) GTC1119CTC (5548G>C) GAT1120GAG (5553T>G) GGT1121_ATT1122del (5554_5559delGGTATT) GCT1123ACT (5560G>A) GCC1124CGG (5563G>C 5564C>G 5565C>G) GTC1126AAG (5569G>A 5570T>A 5571C>G) CAT1127GGA (5572C>G 5573A>G 5574T>A) GCT1128CCT (5575G>C) TCT1129TAT (5579C>A) CAC1130CTC (5582A>T) CTC1131GTA (5584C>G 5586C>A) AAA1132CTT (5587A>C 5588A>T 5589A>T) CCT1133TTG (5590C>T 5591C>T 5592T>G) GCA1134ACC (5593G>A 5595A>C) CCA1135ACA (5596C>A) CCT1136CCA (5601T>A) TCG1137ACG (5602T>A) GCA1138GCT (5607A>T) CCA1139GTG (5608C>G 5609C>T 5610A>G) GAT1140AAA (5611G>A 5613T>A) GAG1141GTC (5615A>T 5616G>C) GAG1141_TCC1142insGAAGGAATCCCC (5617T>G 5617_5618insAAGGAATCCCCA) TCC1142ACC (5617_5618insAAGGAATCCCCA) GAG1144ATC (5623G>A 5624A>T 5625G>C) CTG1145CAT (5627T>A 5628G>T) GAA1146GCA (5630A>C) AAG1147TCC (5632A>T 5633A>C 5634G>C) ACT1148CAC (5635A>C 5636C>A 5637T>C) GAT1149GTT (5639A>T) CAT1150AAG (5641C>A 5643T>G) CCT1151CCG (5646T>G) CTT1152GCG (5647C>G 5648T>C 5649T>G) AAG1153CCA (5650A>C 5651A>C 5652G>A) CTG1154CCT (5654T>C 5655G>T) CGT1155CCC (5657G>C 5658T>C) ATT1156GAT (5659A>G 5660T>A) CGG1157TCG (5662C>T 5663G>C) CGG1158GGG (5665C>G) CGG1159TGG (5668C>T) CGG1160AAA (5671C>A 5672G>A 5673G>A) GAC1161GCC (5675A>C) GAG1162GAA (5679G>A) TCT1163AAG (5680T>A 5681C>A 5682T>G) GCA1164ACT (5683G>A 5685A>T) AAA1165GAA (5686A>G) TAA1166AAT (5689T>A 5691A>T)
hypothetical protein (NP_056791.3)	1	668	93.0%	1810	42.2%	599 (93.2%)	256 (39.8%)	22/22/0/0	2
Protein mutations:	M1R (5553T>G 5554_5559delGGTATT) V2_L3del (5554_5559delGGTATT 5560G>A) P5G (5564C>G 5565C>G) S7R (5570T>A 5571C>G 5572C>G) M8D (5573A>G 5574T>A 5575G>C) L10I (5579C>A) T11S (5582A>T 5584C>G) S12Y (5586C>A 5587A>C) N13F (5588A>T 5589A>T 5590C>T) L14* (5591C>T 5592T>G 5593G>A) H15P (5595A>C 5596C>A) L17Q (5601T>A 5602T>A) H19L (5607A>T 5608C>G) Q20* (5609C>T 5610A>G 5611G>A) M21K (5613T>A) S22_P23insKESP (5617_5618insAAGGAATCCCCA) W26M (5627T>A 5628G>T) K27H (5630A>C 5632A>T) R28P (5633A>C 5634G>C 5635A>C) L29T (5636C>A 5637T>C) I30L (5639A>T 5641C>A) I31S (5643T>G) L32R (5646T>G 5647C>G) L33R (5648T>C 5649T>G 5650A>C) S34H (5651A>C 5652G>A) C35L (5654T>C 5655G>T) V36P (5657G>C 5658T>C 5659A>G) F37I (5660T>A 5662C>T) G38R (5663G>C 5665C>G) G41K (5672G>A 5673G>A) T42P (5675A>C) S43K (5679G>A 5680T>A) L44R (5681C>A 5682T>G 5683G>A) Q45L (5685A>T 5686A>G) N46K (5689T>A) K47I (5691A>T 5692G>C) N48del (5693_5695delAAC) H50L (5699C>T 5700A>T 5701C>A) Q51S (5702C>A 5703A>G 5704G>C) P52F (5705C>T 5706C>T) M53A (5708A>G 5709T>C 5710G>C) T54S (5711A>T) L55I (5714C>A) T56A (5717A>G 5719T>G) W57_Q58insF (5722_5723insTTC) Q58L (5724A>T 5725G>T) V59T (5726G>A 5727T>C 5728A>T) Q62I (5735C>A 5736A>T) G64P (5741G>C 5742G>C 5743A>T) D65Q (5744G>C 5746C>A) V67N (5750G>A 5751T>A 5752C>T) W68del (5753_5755delTGG) D69G (5757A>G) T70K (5760C>A) K71R (5762A>C 5763A>G 5764G>C) A72L (5765G>C 5766C>T 5767A>T) Q74D (5771C>G 5773G>C) P75S (5774C>A 5775C>G) W77_W80del (5780_5791delTGGACTTGGTGG) P81N (5792C>A 5793C>A) T82S (5795A>T 5797A>C) L83H (5799T>A) D86L (5807G>T 5808A>T 5809T>A) V87S (5810G>T 5811T>C 5812A>T) C88L (5813T>C 5814G>T 5815T>C) A89T (5816G>A) L90W (5820T>G) A91L (5822G>T 5823C>T 5824G>A) A92L (5825G>C 5826C>T) S93T (5829G>C) L94del (5831_5833delCTT) E95D (5836G>C) W97G (5840T>G 5842G>T) D98_I99del (5843_5848delGATATC) P100T (5849C>A 5851G>A) T102I (5856C>T 5857C>T) D103N (5858G>A) V104I (5861G>A 5863C>T) S105N (5864T>A 5865C>A 5866G>C) S107T (5870T>A) K108Q (5873A>C) R109G (5876C>G 5878A>G) V110E (5880T>A 5881C>G) R111A (5882A>G 5883G>C 5884A>T) P113L (5888C>T 5889C>T) D114G (5892A>G 5893C>G) S115T (5894T>A 5896A>C) D116W (5897G>T 5898A>G 5899C>G) Y117W (5901A>G 5902T>G) T118P (5903A>C) A119E (5907C>A 5908C>A) A120L (5909G>T 5910C>T 5911T>A) Y121_K122insVCL (5914_5915insGTCTGCCTT) K122R (5915A>C 5916A>G 5917G>A) Q123S (5918C>T 5919A>C) I124V (5921A>G 5923C>A) T125I (5925C>T) W126P (5927T>C 5928G>C 5929G>T) A128L (5933G>C 5934C>T) I129N (5937T>A 5938A>T) G130D (5940G>A 5941G>C) C131Q (5942T>C 5943G>A 5944C>G) S132A (5945A>G 5946G>C) Y133T (5948T>A 5949A>C 5950C>A) R135P (5955G>C 5956G>C) A136D (5958C>A) R137V (5960A>G 5961G>T 5962G>A) T138L (5963A>C 5964C>T 5965T>C) M140A (5969A>G 5970T>C 5971G>T) A141Y (5972G>T 5973C>A 5974A>C) S142G (5975A>G 5977C>G) S143_T144del (5978_5983delTCTACC) R150_D151del (5999_6004delCGGGAT) R153P (6009G>C 6010G>C) T154P (6011A>C 6013C>A) L155N (6014C>A 6015T>A) S156N (6017T>A 6018C>A 6019A>T) A158E (6024C>A 6025T>A) R159Y (6026A>T 6027G>A 6028A>T) R160del (6029_6031delAGG) G163N (6038G>A 6039G>A 6040G>T) L164P (6042T>C 6043A>T) E165Q (6044G>C 6046A>G) S166D (6047T>G 6048C>A 6049C>T) L167F (6050C>T 6052A>C) Y168F (6054A>T 6055C>T) E171Q (6062G>C) D173S (6068G>A 6069A>G 6070T>C) E175I (6074G>A 6075A>T 6076G>A) T177S (6080A>T 6082G>T) G178N (6083G>A 6084G>A 6085G>T) T179D (6086A>G 6087C>A 6088C>T) Y181N (6092T>A) L183K (6098C>A 6099T>A) S184W (6102C>G 6103T>G) K185P (6104A>C 6105A>C) S186V (6107T>G 6108C>T) S187_K188insQ (6112_6113insCAG) K188Q (6113A>C) L190R (6119C>A 6120T>G 6121C>A) I191V (6122A>G) T192S (6126C>G) V193Y (6128G>T 6129T>A 6130A>C) K194S (6131A>T 6132A>C 6133A>T) W195F (6135G>T 6136G>T) D196V (6138A>T 6139C>T) Q197N (6140C>A 6142A>C) S199P (6146A>C 6147G>C 6148C>T) E200T (6149G>A 6150A>C 6151A>C) W201S (6152T>A 6154G>T) T202Y (6155A>T 6156C>A) Q203N (6158C>A 6160A>T) K204Q (6161A>C) Q206N (6167C>A 6169A>T) Q207Y (6170C>T 6172G>T) C208G (6173T>G 6175T>C) H209_Q210insGR (6178_6179insGGGAGA) Q210W (6179C>T 6180A>G) T211K (6183C>A 6184C>A) G212D (6186G>A 6187C>T) C214Q (6191T>C 6192G>A 6193T>A) N215Q (6194A>C 6196C>G) P216R (6198C>G 6199C>G) L217V (6200C>G 6202T>A) K218Q (6203A>C) I219K (6207T>A) F221V (6212T>G 6214C>A) T222R (6215A>C 6216C>G) D223N (6218G>A 6220C>T) G225del (6224_6226delGGA) K226Q (6227A>C) L227I (6230T>A) K229C (6236A>T 6237A>G 6238G>T) D230H (6239G>C 6241C>T) W231S (6243G>C) I232L (6245A>T) T233D (6248A>G 6249C>A 6250G>C) G234L (6251G>C 6252G>T) K235D (6254A>G 6256A>T) T236Y (6257A>T 6258C>A) W237L (6261G>T 6262G>A) G238K (6263G>A 6264G>A) L239I (6266T>A) R240S (6271A>T) Y242T (6275T>A 6276A>C) V243_G245del (6278_6286delGTGTCTGGA) H246E (6287C>G 6289T>A) P247K (6290C>A 6291C>A) V249K (6296G>A 6297T>A) F251E (6302T>G 6303T>A 6304C>A) T252N (6306C>A 6307C>T) R254Q (6312G>A 6313C>A) L255K (6314T>A 6315T>A 6316A>G) K256W (6317A>T 6318A>G 6319A>G) I257V (6320A>G 6322C>A) T258N (6324C>A 6325C>T) N259G (6326A>G 6327A>G 6328C>T) M260I (6331G>A) P261S (6332C>T 6334A>T) A262W (6335G>T 6336C>G 6337T>G) V263G (6339T>G 6340G>A) A264I (6341G>A 6342C>T) G266Y (6347G>T 6348G>A 6349T>C) P267Y (6350C>T 6351C>A) D268G (6354A>G 6355C>A) L269G (6356C>G 6357T>G) V270S (6359G>T 6360T>C 6361C>T) L271G (6362C>G 6363T>G 6364T>G) V272R (6365G>A 6366T>G 6367G>A) E273K (6368G>A 6370A>G) Q274K (6371C>A) P276S (6377C>T) P276_P277insVLTIR (6379_6380insGTTCTGACTATTCGC) P277L (6381C>T 6382T>C) T279I (6387C>T 6388G>A) S280E (6389T>G 6390C>A 6391C>A) L281T (6392C>A 6393T>C 6394C>T) A282Q (6395G>C 6396C>A 6397T>G) L283M (6398C>A 6400C>G) P284E (6401C>G 6402C>A) L287V (6410C>G) P288A (6413C>G 6415C>T) P289I (6416C>A 6417C>T) R290_E291del (6419_6424delAGGGAA) A292G (6426C>G 6427G>A) P294N (6431C>A 6432C>A 6433G>T) P295K (6434C>A 6435C>A 6436A>G) S296G (6437T>G 6438C>G) P298A (6443C>G) D299E (6448C>A) S300Q (6449T>C 6450C>A 6451T>A) N301G (6452A>G 6453A>G 6454C>A) S302P (6455T>C 6457C>T) T303P (6458A>C) A304I (6461G>A 6462C>T) L305Q (6465T>A 6466G>A) A306E (6468C>A 6469G>A) T307Q (6470A>C 6471C>A 6472T>G) S308R (6475T>G) A309P (6476G>C) A309_Q310insS (6478_6479insTCT) Q310P (6480A>C 6481A>T) T311N (6483C>A 6484T>C) T313S (6488A>T 6490G>T) V314D (6492T>A 6493G>T) R315Y (6494A>T 6495G>A 6496A>C) K316N (6499A>T) I318T (6504T>C 6505T>C) V319S (6506G>T 6507T>C) V319_T320insG (6508_6509insGGA) T320S (6509A>T 6511C>A) L321V (6512C>G 6514A>C) N322P (6515A>C 6516A>C) P324E (6521C>G 6522C>A) P326N (6527C>A 6528C>A) T327I (6531C>T) T327_T328insTIK (6532_6533insACTATTAAA) D330A (6540A>C 6541C>G) R331K (6543G>A) D334S (6551G>A 6552A>G 6553T>C) V336I (6557G>A 6559G>C) L341Q (6573T>A) T342A (6575A>G 6577C>T) A345S (6584G>T 6586T>C) N347T (6591A>C 6592C>T) G349E (6597G>A) E352S (6605G>T 6606A>C 6607G>T) M360S (6629A>T 6630T>C) A367G (6651C>G) I368M (6655A>G) S370R (6659T>A 6660C>G) S371G (6662T>G 6663C>G) E373K (6668G>A 6670G>A) V374F (6671G>T) A375N (6674G>A 6675C>A 6676C>T) Y376V (6677T>G 6678A>T 6679C>G) S377T (6680T>A 6682C>A) T378K (6684C>A 6685C>G) D379E (6688C>A) L380H (6690T>A) L380_D381insR (6691_6692insAGA) R382Q (6696G>A 6697G>A) R384T (6701C>A 6702G>C 6703C>A) T387S (6710A>T) G389N (6716G>A 6717G>A 6718A>T) H399K (6746C>A 6748C>A) L401T (6752T>A 6753T>C 6754G>C) K405M (6765A>T) F408P (6773T>C 6774T>C 6775T>A) T409S (6776A>T) Q416H (6799G>C) L418E (6803C>G 6804T>A) S419A (6806T>G) I420F (6809A>T 6811C>T) S422R (6815T>C 6816C>G 6817C>A) S423T (6818T>A) G424S (6821G>T 6822G>C 6823A>T) D425E (6826C>G) H426S (6827C>A 6828A>G) L430V (6839C>G 6841C>A) S432G (6845T>G 6846C>G 6847C>T) N433Y (6848A>T 6850C>T) H434D (6851C>G 6853T>C) S435R (6856C>G) S440N (6870G>A 6871C>T) L447V (6890C>G 6892C>T) S450L (6900C>T 6901A>G) R456K (6918G>A) I460V (6929A>G 6931C>T) Q461M (6932C>A 6933A>T) L464I (6941C>A 6943G>T) I465V (6944A>G 6946T>C) I468V (6953A>G 6955C>G) E474K (6971G>A) V475A (6975T>C 6976T>A) L476V (6977T>G 6979G>C) Q478D (6983C>G 6985G>T) A479E (6987C>A 6988C>A) N482Y (6995A>T) S483R (6998T>A 6999C>G 7000T>A) H484Y (7001C>T 7003C>T) P485N (7004C>A 7005C>A 7006C>T) T487P (7010A>C 7012T>A) A491P (7022G>C 7024T>C) V492I (7025G>A 7027C>A) L499M (7046T>A 7048A>G) I504T (7062T>C 7063C>G) T505A (7064A>G 7066G>C) A506V (7068C>T 7069G>T) I508V (7073A>G) A577V (7281C>T 7282G>A) I587V (7310A>G) V593I (7328G>A 7330A>C) K598S (7344A>G 7345A>C) K601R (7353A>G) K603R (7359A>G 7360A>G) D605E (7366T>G) K606R (7368A>G 7369A>G) Q608R (7374A>G 7375G>A) L609R (7376T>A 7377T>G 7378A>G) Q612E (7385C>G) K613A (7388A>G 7389A>C 7390A>T) S614D (7391A>G 7392G>A) N616G (7397A>G 7398A>G 7399C>G) Y618F (7404A>T) N624R (7422A>G 7423C>G) F628M (7433T>A 7435C>G) T634A (7451A>G 7453C>T) I635L (7454A>C 7456C>G) A636T (7457G>A 7459T>G) L640V (7469T>G) L641V (7472C>G) I647T (7491T>C 7492C>A) L648V (7493C>G 7495C>T) I652L (7505A>T 7507C>A) K655R (7515A>G) L656F (7519A>T) Q658A (7523C>G 7524A>C 7525A>C) I660V (7529A>G 7531C>T) N661R (7533A>G 7534T>A) D662E (7537T>A) I664V (7541A>G 7543A>G) C667V (7550T>G 7551G>T 7552T>C) *668Q (7553T>C 7555A>G)
Codon mutations:	ATG1AGA (5553T>G 5554_5559delGGTATT) GTA2_TTG3del (5554_5559delGGTATT 5560G>A) CTG4CTC (5563G>C) CCT5GGT (5564C>G 5565C>G) GGG6GGA (5569G>A) TCC7AGG (5570T>A 5571C>G 5572C>G) ATG8GAC (5573A>G 5574T>A 5575G>C) CTC10ATC (5579C>A) ACC11TCG (5582A>T 5584C>G) TCA12TAC (5586C>A 5587A>C) AAC13TTT (5588A>T 5589A>T 5590C>T) CTG14TGA (5591C>T 5592T>G 5593G>A) CAC15CCA (5595A>C 5596C>A) CTT17CAA (5601T>A 5602T>A) CAC19CTG (5607A>T 5608C>G) CAG20TGA (5609C>T 5610A>G 5611G>A) ATG21AAG (5613T>A) AGT22TCG (5615A>T 5616G>C 5617T>G) AGT22_CCT23insAAGGAATCCCCA (5617_5618insAAGGAATCCCCA) GGG24GGA (5623G>A) AGC25TCC (5624A>T 5625G>C) TGG26ATG (5627T>A 5628G>T) AAA27CAT (5630A>C 5632A>T) AGA28CCC (5633A>C 5634G>C 5635A>C) CTG29ACG (5636C>A 5637T>C) ATC30TTA (5639A>T 5641C>A) ATC31AGC (5643T>G) CTC32CGG (5646T>G 5647C>G) TTA33CGC (5648T>C 5649T>G 5650A>C) AGC34CAC (5651A>C 5652G>A) TGC35CTC (5654T>C 5655G>T) GTA36CCG (5657G>C 5658T>C 5659A>G) TTC37ATT (5660T>A 5662C>T) GGC38CGG (5663G>C 5665C>G) GGC39GGT (5668C>T) GGC40GGA (5671C>A) GGG41AAG (5672G>A 5673G>A) ACG42CCG (5675A>C) AGT43AAA (5679G>A 5680T>A) CTG44AGA (5681C>A 5682T>G 5683G>A) CAA45CTG (5685A>T 5686A>G) AAT46AAA (5689T>A) AAG47ATC (5691A>T 5692G>C) AAC48del (5693_5695delAAC) CAC50TTA (5699C>T 5700A>T 5701C>A) CAG51AGC (5702C>A 5703A>G 5704G>C) CCC52TTC (5705C>T 5706C>T) ATG53GCC (5708A>G 5709T>C 5710G>C) ACC54TCC (5711A>T) CTC55ATC (5714C>A) ACT56GCG (5717A>G 5719T>G) TGG57_CAG58insTTC (5722_5723insTTC) CAG58CTT (5724A>T 5725G>T) GTA59ACT (5726G>A 5727T>C 5728A>T) TCC61TCA (5734C>A) CAA62ATA (5735C>A 5736A>T) GGA64CCT (5741G>C 5742G>C 5743A>T) GAC65CAA (5744G>C 5746C>A) GTC67AAT (5750G>A 5751T>A 5752C>T) TGG68del (5753_5755delTGG) GAT69GGT (5757A>G) ACA70AAA (5760C>A) AAG71CGC (5762A>C 5763A>G 5764G>C) GCA72CTT (5765G>C 5766C>T 5767A>T) GTC73GTG (5770C>G) CAG74GAC (5771C>G 5773G>C) CCC75AGC (5774C>A 5775C>G) CCT76CCG (5779T>G) TGG77_TGG80del (5780_5791delTGGACTTGGTGG) CCC81AAC (5792C>A 5793C>A) ACA82TCC (5795A>T 5797A>C) CTT83CAT (5799T>A) CCT85CCC (5806T>C) GAT86TTA (5807G>T 5808A>T 5809T>A) GTA87TCT (5810G>T 5811T>C 5812A>T) TGT88CTC (5813T>C 5814G>T 5815T>C) GCC89ACC (5816G>A) TTG90TGG (5820T>G) GCG91TTA (5822G>T 5823C>T 5824G>A) GCT92CTT (5825G>C 5826C>T) AGT93ACT (5829G>C) CTT94del (5831_5833delCTT) GAG95GAC (5836G>C) TGG97GGT (5840T>G 5842G>T) GAT98_ATC99del (5843_5848delGATATC) CCG100ACA (5849C>A 5851G>A) GGA101GGT (5854A>T) ACC102ATT (5856C>T 5857C>T) GAT103AAT (5858G>A) GTC104ATT (5861G>A 5863C>T) TCG105AAC (5864T>A 5865C>A 5866G>C) TCC106AGC (5867T>A 5868C>G) TCT107ACT (5870T>A) AAA108CAA (5873A>C) CGA109GGG (5876C>G 5878A>G) GTC110GAG (5880T>A 5881C>G) AGA111GCT (5882A>G 5883G>C 5884A>T) CCT112CCC (5887T>C) CCG113TTG (5888C>T 5889C>T) GAC114GGG (5892A>G 5893C>G) TCA115ACC (5894T>A 5896A>C) GAC116TGG (5897G>T 5898A>G 5899C>G) TAT117TGG (5901A>G 5902T>G) ACT118CCT (5903A>C) GCC119GAA (5907C>A 5908C>A) GCT120TTA (5909G>T 5910C>T 5911T>A) TAT121_AAG122insGTCTGCCTT (5914_5915insGTCTGCCTT) AAG122CGA (5915A>C 5916A>G 5917G>A) CAA123TCA (5918C>T 5919A>C) ATC124GTA (5921A>G 5923C>A) ACC125ATC (5925C>T) TGG126CCT (5927T>C 5928G>C 5929G>T) GGA127GGT (5932A>T) GCC128CTC (5933G>C 5934C>T) ATA129AAT (5937T>A 5938A>T) GGG130GAC (5940G>A 5941G>C) TGC131CAG (5942T>C 5943G>A 5944C>G) AGC132GCC (5945A>G 5946G>C) TAC133ACA (5948T>A 5949A>C 5950C>A) CCT134CCC (5953T>C) CGG135CCC (5955G>C 5956G>C) GCT136GAT (5958C>A) AGG137GTA (5960A>G 5961G>T 5962G>A) ACT138CTC (5963A>C 5964C>T 5965T>C) AGA139CGT (5966A>C 5968A>T) ATG140GCT (5969A>G 5970T>C 5971G>T) GCA141TAC (5972G>T 5973C>A 5974A>C) AGC142GGG (5975A>G 5977C>G) TCT143_ACC144del (5978_5983delTCTACC) TTC145TTT (5986C>T) GTA147GTT (5992A>T) TGT148TGC (5995T>C) CCC149CCA (5998C>A) CGG150_GAT151del (5999_6004delCGGGAT) GGC152GGA (6007C>A) CGG153CCC (6009G>C 6010G>C) ACC154CCA (6011A>C 6013C>A) CTT155AAT (6014C>A 6015T>A) TCA156AAT (6017T>A 6018C>A 6019A>T) GCT158GAA (6024C>A 6025T>A) AGA159TAT (6026A>T 6027G>A 6028A>T) AGG160del (6029_6031delAGG) TGC161TGT (6034C>T) GGG162GGA (6037G>A) GGG163AAT (6038G>A 6039G>A 6040G>T) CTA164CCT (6042T>C 6043A>T) GAA165CAG (6044G>C 6046A>G) TCC166GAT (6047T>G 6048C>A 6049C>T) CTA167TTC (6050C>T 6052A>C) TAC168TTT (6054A>T 6055C>T) TGT169TGC (6058T>C) AAA170AAG (6061A>G) GAA171CAA (6062G>C) GAT173AGC (6068G>A 6069A>G 6070T>C) TGT174TGC (6073T>C) GAG175ATA (6074G>A 6075A>T 6076G>A) ACC176ACT (6079C>T) ACG177TCT (6080A>T 6082G>T) GGG178AAT (6083G>A 6084G>A 6085G>T) ACC179GAT (6086A>G 6087C>A 6088C>T) GGT180GGG (6091T>G) TAT181AAT (6092T>A) CTA183AAA (6098C>A 6099T>A) TCT184TGG (6102C>G 6103T>G) AAA185CCA (6104A>C 6105A>C) TCC186GTC (6107T>G 6108C>T) TCA187TCT (6112A>T) TCA187_AAA188insCAG (6112_6113insCAG) AAA188CAA (6113A>C) CTC190AGA (6119C>A 6120T>G 6121C>A) ATA191GTA (6122A>G) ACT192AGT (6126C>G) GTA193TAC (6128G>T 6129T>A 6130A>C) AAA194TCT (6131A>T 6132A>C 6133A>T) TGG195TTT (6135G>T 6136G>T) GAC196GTT (6138A>T 6139C>T) CAA197AAC (6140C>A 6142A>C) AGC199CCT (6146A>C 6147G>C 6148C>T) GAA200ACC (6149G>A 6150A>C 6151A>C) TGG201AGT (6152T>A 6154G>T) ACT202TAT (6155A>T 6156C>A) CAA203AAT (6158C>A 6160A>T) AAA204CAA (6161A>C) CAA206AAT (6167C>A 6169A>T) CAG207TAT (6170C>T 6172G>T) TGT208GGC (6173T>G 6175T>C) CAC209CAT (6178C>T) CAC209_CAG210insGGGAGA (6178_6179insGGGAGA) CAG210TGG (6179C>T 6180A>G) ACC211AAA (6183C>A 6184C>A) GGC212GAT (6186G>A 6187C>T) TGT214CAA (6191T>C 6192G>A 6193T>A) AAC215CAG (6194A>C 6196C>G) CCC216CGG (6198C>G 6199C>G) CTT217GTA (6200C>G 6202T>A) AAA218CAA (6203A>C) ATA219AAA (6207T>A) TTC221GTA (6212T>G 6214C>A) ACA222CGA (6215A>C 6216C>G) GAC223AAT (6218G>A 6220C>T) AAA224AAG (6223A>G) GGA225del (6224_6226delGGA) AAA226CAA (6227A>C) TTA227ATA (6230T>A) TCC228AGC (6233T>A 6234C>G) AAG229TGT (6236A>T 6237A>G 6238G>T) GAC230CAT (6239G>C 6241C>T) TGG231TCG (6243G>C) ATA232TTA (6245A>T) ACG233GAC (6248A>G 6249C>A 6250G>C) GGA234CTA (6251G>C 6252G>T) AAA235GAT (6254A>G 6256A>T) ACC236TAC (6257A>T 6258C>A) TGG237TTA (6261G>T 6262G>A) GGA238AAA (6263G>A 6264G>A) TTA239ATA (6266T>A) AGA240AGT (6271A>T) TAT242ACT (6275T>A 6276A>C) GTG243_GGA245del (6278_6286delGTGTCTGGA) CAT246GAA (6287C>G 6289T>A) CCA247AAA (6290C>A 6291C>A) GGC248GGA (6295C>A) GTA249AAA (6296G>A 6297T>A) CAG250CAA (6301G>A) TTC251GAA (6302T>G 6303T>A 6304C>A) ACC252AAT (6306C>A 6307C>T) CGC254CAA (6312G>A 6313C>A) TTA255AAG (6314T>A 6315T>A 6316A>G) AAA256TGG (6317A>T 6318A>G 6319A>G) ATC257GTA (6320A>G 6322C>A) ACC258AAT (6324C>A 6325C>T) AAC259GGT (6326A>G 6327A>G 6328C>T) ATG260ATA (6331G>A) CCA261TCT (6332C>T 6334A>T) GCT262TGG (6335G>T 6336C>G 6337T>G) GTG263GGA (6339T>G 6340G>A) GCA264ATA (6341G>A 6342C>T) GTA265GTG (6346A>G) GGT266TAC (6347G>T 6348G>A 6349T>C) CCT267TAT (6350C>T 6351C>A) GAC268GGA (6354A>G 6355C>A) CTC269GGC (6356C>G 6357T>G) GTC270TCT (6359G>T 6360T>C 6361C>T) CTT271GGG (6362C>G 6363T>G 6364T>G) GTG272AGA (6365G>A 6366T>G 6367G>A) GAA273AAG (6368G>A 6370A>G) CAA274AAA (6371C>A) CCT276TCT (6377C>T) CCT276_CCT277insGTTCTGACTATTCGC (6379_6380insGTTCTGACTATTCGC) CCT277CTC (6381C>T 6382T>C) ACG279ATA (6387C>T 6388G>A) TCC280GAA (6389T>G 6390C>A 6391C>A) CTC281ACT (6392C>A 6393T>C 6394C>T) GCT282CAG (6395G>C 6396C>A 6397T>G) CTC283ATG (6398C>A 6400C>G) CCA284GAA (6401C>G 6402C>A) CCT286CCG (6409T>G) CTT287GTT (6410C>G) CCC288GCT (6413C>G 6415C>T) CCA289ATA (6416C>A 6417C>T) AGG290_GAA291del (6419_6424delAGGGAA) GCG292GGA (6426C>G 6427G>A) CCG294AAT (6431C>A 6432C>A 6433G>T) CCA295AAG (6434C>A 6435C>A 6436A>G) TCT296GGT (6437T>G 6438C>G) CTC297TTG (6440C>T 6442C>G) CCC298GCC (6443C>G) GAC299GAA (6448C>A) TCT300CAA (6449T>C 6450C>A 6451T>A) AAC301GGA (6452A>G 6453A>G 6454C>A) TCC302CCT (6455T>C 6457C>T) ACA303CCA (6458A>C) GCC304ATC (6461G>A 6462C>T) CTG305CAA (6465T>A 6466G>A) GCG306GAA (6468C>A 6469G>A) ACT307CAG (6470A>C 6471C>A 6472T>G) AGT308AGG (6475T>G) GCA309CCA (6476G>C) GCA309_CAA310insTCT (6478_6479insTCT) CAA310CCT (6480A>C 6481A>T) ACT311AAC (6483C>A 6484T>C) ACG313TCT (6488A>T 6490G>T) GTG314GAT (6492T>A 6493G>T) AGA315TAC (6494A>T 6495G>A 6496A>C) AAA316AAT (6499A>T) ATT318ACC (6504T>C 6505T>C) GTT319TCT (6506G>T 6507T>C) GTT319_ACC320insGGA (6508_6509insGGA) ACC320TCA (6509A>T 6511C>A) CTA321GTC (6512C>G 6514A>C) AAC322CCC (6515A>C 6516A>C) CCG324GAG (6521C>G 6522C>A) CCC326AAC (6527C>A 6528C>A) ACC327ATC (6531C>T) ACC327_ACA328insACTATTAAA (6532_6533insACTATTAAA) GGC329GGG (6538C>G) GAC330GCG (6540A>C 6541C>G) AGA331AAA (6543G>A) GAT334AGC (6551G>A 6552A>G 6553T>C) CTT335CTC (6556T>C) GTG336ATC (6557G>A 6559G>C) GGG338GGA (6565G>A) GCC339GCT (6568C>T) TTC340TTT (6571C>T) CTA341CAA (6573T>A) ACC342GCT (6575A>G 6577C>T) TTA343CTT (6578T>C 6580A>T) AAT344AAC (6583T>C) GCT345TCC (6584G>T 6586T>C) ACC346ACG (6589C>G) AAC347ACT (6591A>C 6592C>T) GGG349GAG (6597G>A) GCC350GCT (6601C>T) ACT351ACC (6604T>C) GAG352TCT (6605G>T 6606A>C 6607G>T) TGC354TGT (6613C>T) TGT357TGC (6622T>C) TTG358TTA (6625G>A) GCC359GCT (6628C>T) ATG360TCG (6629A>T 6630T>C) CCC362CCA (6637C>A) TAT364TAC (6643T>C) GAA366GAG (6649A>G) GCA367GGA (6651C>G) ATA368ATG (6655A>G) GCC369GCT (6658C>T) TCA370AGA (6659T>A 6660C>G) TCA371GGA (6662T>G 6663C>G) GGA372GGG (6667A>G) GAG373AAA (6668G>A 6670G>A) GTC374TTC (6671G>T) GCC375AAT (6674G>A 6675C>A 6676C>T) TAC376GTG (6677T>G 6678A>T 6679C>G) TCC377ACA (6680T>A 6682C>A) ACC378AAG (6684C>A 6685C>G) GAC379GAA (6688C>A) CTT380CAT (6690T>A) CTT380_GAC381insAGA (6691_6692insAGA) CGG382CAA (6696G>A 6697G>A) TGC383TGT (6700C>T) CGC384ACA (6701C>A 6702G>C 6703C>A) GGG386GGA (6709G>A) ACC387TCC (6710A>T) GGA389AAT (6716G>A 6717G>A 6718A>T) CTC391CTT (6724C>T) CTC393CTT (6730C>T) GTC396GTT (6739C>T) TCA397TCT (6742A>T) CAC399AAA (6746C>A 6748C>A) GGG400GGC (6751G>C) TTG401ACC (6752T>A 6753T>C 6754G>C) GGA404GGG (6763A>G) AAG405ATG (6765A>T) GTG406GTT (6769G>T) TTT408CCA (6773T>C 6774T>C 6775T>A) ACC409TCC (6776A>T) CAT410CAC (6781T>C) CAG411CAA (6784G>A) CAT412CAC (6787T>C) CTC413CTT (6790C>T) TGC414TGT (6793C>T) AAT415AAC (6796T>C) CAG416CAC (6799G>C) ACC417ACT (6802C>T) CTA418GAA (6803C>G 6804T>A) TCC419GCC (6806T>G) ATC420TTT (6809A>T 6811C>T) TCC422CGA (6815T>C 6816C>G 6817C>A) TCC423ACC (6818T>A) GGA424TCT (6821G>T 6822G>C 6823A>T) GAC425GAG (6826C>G) CAT426AGT (6827C>A 6828A>G) CAG427CAA (6832G>A) CTC430GTA (6839C>G 6841C>A) CCC431CCT (6844C>T) TCC432GGT (6845T>G 6846C>G 6847C>T) AAC433TAT (6848A>T 6850C>T) CAT434GAC (6851C>G 6853T>C) AGC435AGG (6856C>G) GCT438GCA (6865T>A) TGC439TGT (6868C>T) AGC440AAT (6870G>A 6871C>T) GGC442GGA (6877C>A) CTC443TTA (6878C>T 6880C>A) TGC446TGT (6889C>T) CTC447GTT (6890C>G 6892C>T) TCA450TTG (6900C>T 6901A>G) TTT452TTC (6907T>C) AAT453AAC (6910T>C) CAG454CAA (6913G>A) AGA456AAA (6918G>A) GAT457GAC (6922T>C) TTC458TTT (6925C>T) TGT459TGC (6928T>C) ATC460GTT (6929A>G 6931C>T) CAG461ATG (6932C>A 6933A>T) CAG463CAA (6940G>A) CTG464ATT (6941C>A 6943G>T) ATT465GTC (6944A>G 6946T>C) CCT466CCC (6949T>C) CGC467CGG (6952C>G) ATC468GTG (6953A>G 6955C>G) TAT469TAC (6958T>C) CCT472CCC (6967T>C) GAA474AAA (6971G>A) GTT475GCA (6975T>C 6976T>A) TTG476GTC (6977T>G 6979G>C) TTA477CTT (6980T>C 6982A>T) CAG478GAT (6983C>G 6985G>T) GCC479GAA (6987C>A 6988C>A) AAT482TAT (6995A>T) TCT483AGA (6998T>A 6999C>G 7000T>A) CAC484TAT (7001C>T 7003C>T) CCC485AAT (7004C>A 7005C>A 7006C>T) AGG486CGG (7007A>C) ACT487CCA (7010A>C 7012T>A) GCT491CCC (7022G>C 7024T>C) GTC492ATA (7025G>A 7027C>A) TCA493TCC (7030A>C) CTT494CTG (7033T>G) GTT498GTA (7045T>A) TTA499ATG (7046T>A 7048A>G) CTG500CTC (7051G>C) GGG501GGA (7054G>A) TTG502TTA (7057G>A) GGA503GGG (7060A>G) ATC504ACG (7062T>C 7063C>G) ACG505GCC (7064A>G 7066G>C) GCG506GTT (7068C>T 7069G>T) GGA507GGC (7072A>C) ATA508GTA (7073A>G) GGT509GGA (7078T>A) GTG558GTT (7225G>T) CTC559CTA (7228C>A) CAA560CAG (7231A>G) AAT561AAC (7234T>C) AGG562AGA (7237G>A) AGA563AGG (7240A>G) GGC564GGG (7243C>G) CTT565TTA (7244C>T 7246T>A) GAC566GAT (7249C>T) TTG567CTG (7250T>C) CTG568TTA (7253C>T 7255G>A) GGT573GGA (7270T>A) GGC574GGG (7273C>G) CTC575TTA (7274C>T 7276C>A) GCG577GTA (7281C>T 7282G>A) CTA579TTA (7286C>T) AAG580AAA (7291G>A) GAA581GAG (7294A>G) GAG582GAA (7297G>A) TGT584TGC (7303T>C) TTT585TTC (7306T>C) TAC586TAT (7309C>T) ATA587GTA (7310A>G) GAC588GAT (7315C>T) GGT591GGA (7324T>A) GCA592GCC (7327A>C) GTA593ATC (7328G>A 7330A>C) CGG594AGA (7331C>A 7333G>A) AAA598AGC (7344A>G 7345A>C) AAA599AAG (7348A>G) CTC600CTT (7351C>T) AAA601AGA (7353A>G) AAA603AGG (7359A>G 7360A>G) CTG604TTA (7361C>T 7363G>A) GAT605GAG (7366T>G) AAA606AGG (7368A>G 7369A>G) AGA607CGT (7370A>C 7372A>T) CAG608CGA (7374A>G 7375G>A) TTA609AGG (7376T>A 7377T>G 7378A>G) GAG610GAA (7381G>A) CGC611AGA (7382C>A 7384C>A) CAG612GAG (7385C>G) AAA613GCT (7388A>G 7389A>C 7390A>T) AGC614GAC (7391A>G 7392G>A) CAA615CAG (7396A>G) AAC616GGG (7397A>G 7398A>G 7399C>G) TAT618TTT (7404A>T) AAT623AAC (7420T>C) AAC624AGG (7422A>G 7423C>G) TCC625TCT (7426C>T) TTC628ATG (7433T>A 7435C>G) ACT629ACC (7438T>C) CTA632CTT (7447A>T) TCA633TCT (7450A>T) ACC634GCT (7451A>G 7453C>T) ATC635CTG (7454A>C 7456C>G) GCT636ACG (7457G>A 7459T>G) TTA640GTA (7469T>G) CTC641GTC (7472C>G) CTC642CTG (7477C>G) CTT643CTC (7480T>C) TTG645TTA (7486G>A) CTC646CTT (7489C>T) ATC647ACA (7491T>C 7492C>A) CTC648GTT (7493C>G 7495C>T) CCA650CCT (7501A>T) ATC652TTA (7505A>T 7507C>A) ATC653ATT (7510C>T) AAG655AGG (7515A>G) TTA656TTT (7519A>T) CAA658GCC (7523C>G 7524A>C 7525A>C) TTC659TTT (7528C>T) ATC660GTT (7529A>G 7531C>T) AAT661AGA (7533A>G 7534T>A) GAT662GAA (7537T>A) AGG663CGA (7538A>C 7540G>A) ATA664GTG (7541A>G 7543A>G) TGT667GTC (7550T>G 7551G>T 7552T>C) TAA668CAG (7553T>C 7555A>G)

^*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43