Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Lambdavirus lambda

Assembly

980 (5 contig(s))
8.4
80
5.16 rpm (after QC)
1
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Lambdavirus lambda (Taxonomy ID: 10710)
96.319
97.0149
4
73

Alignment

1794.0 (NT) + 2555.0 (AA) = 4349.0
94.5435
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT21257456802.0%179492.7%978 (99.8%)942 (96.1%)0/2
Mutations:
21273T>G 22473G>T 22478A>T 22500T>A 22511C>A 22518A>C 22538C>T 22539T>G 22540G>A 22541T>A 22548T>C 22550T>G 22551G>A 22560G>A 22563T>G 22564T>G 22566T>A 22567G>T 22568delA 22579A>C 22581delA 22585T>C 22588A>G 22589T>C 22591A>C 22594T>G 22600T>G 34319C>T 34344A>M 34384T>C 38393C>A 45215G>A 45419T>C 45498A>G 45546G>A 45567T>G 45645A>G 45680G>C
CDS
77997.3%16193.6%23 (100%)21 (91.3%)0/0/0/00
Protein mutations:
I82S (21273T>G)
Codon mutations:
ATC82AGC (21273T>G)
16719514.9%15673.9%29 (100%)23 (79.3%)0/0/0/02
Protein mutations:
W167C (22473G>T) K169M (22478A>T) S180* (22511C>A) A189V (22538C>T 22539T>G) V190N (22540G>A 22541T>A) M193R (22550T>G 22551G>A)
Codon mutations:
TGG167TGT (22473G>T) AAG169ATG (22478A>T) CGT176CGA (22500T>A) TCA180TAA (22511C>A) GCA182GCC (22518A>C) GCT189GTG (22538C>T 22539T>G) GTC190AAC (22540G>A 22541T>A) GTT192GTC (22548T>C) ATG193AGA (22550T>G 22551G>A)
11965.5%11378.5%19 (100%)18 (94.7%)0/0/1/00
15657.1%34698.9%56 (100%)55 (98.2%)0/0/0/00
1108100%68198.6%108 (100%)107 (99.1%)0/0/0/01
Protein mutations:
R105G (45498A>G)
Codon mutations:
TTG10TTA (45215G>A) TTT78TTC (45419T>C) AGA105GGA (45498A>G)
1106100%67198.5%106 (100%)105 (99.1%)0/0/0/01
Protein mutations:
R103G (45498A>G)
Codon mutations:
TTG8TTA (45215G>A) TTT76TTC (45419T>C) AGA103GGA (45498A>G)
16138.4%42798.2%61 (100%)61 (100%)0/0/0/00
Proteins
77997.3%16193.6%23 (100%)21 (91.3%)0/0/0/00
Protein mutations:
I82S (21273T>G)
Codon mutations:
ATC82AGC (21273T>G)
16719514.9%15673.9%29 (100%)23 (79.3%)0/0/0/02
Protein mutations:
W167C (22473G>T) K169M (22478A>T) S180* (22511C>A) A189V (22538C>T 22539T>G) V190N (22540G>A 22541T>A) M193R (22550T>G 22551G>A)
Codon mutations:
TGG167TGT (22473G>T) AAG169ATG (22478A>T) CGT176CGA (22500T>A) TCA180TAA (22511C>A) GCA182GCC (22518A>C) GCT189GTG (22538C>T 22539T>G) GTC190AAC (22540G>A 22541T>A) GTT192GTC (22548T>C) ATG193AGA (22550T>G 22551G>A)
11965.5%11378.5%19 (100%)18 (94.7%)0/0/1/00
Protein mutations:none
Codon mutations:
TTT5TKT (34344A>M) CAG13CAA (34319C>T)
15657.1%34698.9%56 (100%)55 (98.2%)0/0/0/00
Protein mutations:none
Codon mutations:
CGA12AGA (38393C>A)
1108100%68198.6%108 (100%)107 (99.1%)0/0/0/01
Protein mutations:
R105G (45498A>G)
Codon mutations:
TTG10TTA (45215G>A) TTT78TTC (45419T>C) AGA105GGA (45498A>G)
1106100%67198.5%106 (100%)105 (99.1%)0/0/0/01
Protein mutations:
R103G (45498A>G)
Codon mutations:
TTG8TTA (45215G>A) TTT76TTC (45419T>C) AGA103GGA (45498A>G)
16138.4%42798.2%61 (100%)61 (100%)0/0/0/00
Protein mutations:none
Codon mutations:
GTA2GTG (45498A>G) TCG18TCA (45546G>A) CGT25CGG (45567T>G) AAA51AAG (45645A>G) GGC63.C. (45680G>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43