Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Salmonella phage g341c

Assembly

409 (1 contig(s))
18.7
68
4.39 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Salmonella phage g341c (Taxonomy ID: 590739)
93.8875
90.303
1
68

Alignment

718.0 (NT) + 967.0 (AA) = 1685.0
89.58
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT38289386971.0%71887.8%409 (100%)384 (93.9%)0/0
Mutations:
38292A>T 38331C>A 38349C>T 38391T>C 38405G>A 38413G>C 38432C>G 38434C>T 38441C>A 38472C>T 38487A>G 38490C>A 38502A>G 38509C>T 38512C>T 38521A>T 38522G>A 38574G>A 38582A>T 38591C>T 38600C>T 38624C>T 38642C>T 38663T>G 38665G>A
CDS
11615927.7%29093.9%44 (100%)42 (95.5%)0/0/0/01
Protein mutations:
R154K (38405G>A) E157Q (38413G>C)
Codon mutations:
GCA116GCT (38292A>T) GGC129GGA (38331C>A) TTC135TTT (38349C>T) GCT149GCC (38391T>C) AGA154AAA (38405G>A) GAG157CAG (38413G>C)
19464.4%53088.3%94 (100%)84 (89.4%)0/0/0/00
Protein mutations:
A6V (38434C>T) N24D (38487A>G) H25N (38490C>A) N29D (38502A>G) T31I (38509C>T) A32V (38512C>T) E35V (38521A>T 38522G>A) D53N (38574G>A) R83H (38665G>A)
Codon mutations:
ACC5ACG (38432C>G) GCG6GTG (38434C>T) ATC8ATA (38441C>A) CTG19TTG (38472C>T) AAT24GAT (38487A>G) CAT25AAT (38490C>A) AAC29GAC (38502A>G) ACC31ATC (38509C>T) GCC32GTC (38512C>T) GAG35GTA (38521A>T 38522G>A) GAT53AAT (38574G>A) GCA55GCT (38582A>T) GAC58GAT (38591C>T) TAC61TAT (38600C>T) AAC69AAT (38624C>T) CTC75CTT (38642C>T) GGT82GGG (38663T>G) CGT83CAT (38665G>A)
12743.5%14788.6%27 (100%)23 (85.2%)0/0/0/00
Protein mutations:
T3M (38624C>T) S9F (38642C>T) V16G (38663T>G) V17I (38665G>A)
Codon mutations:
ACG3ATG (38624C>T) TCC9TTC (38642C>T) GTC16GGC (38663T>G) GTA17ATA (38665G>A)
Proteins
11615927.7%29093.9%44 (100%)42 (95.5%)0/0/0/01
Protein mutations:
R154K (38405G>A) E157Q (38413G>C)
Codon mutations:
GCA116GCT (38292A>T) GGC129GGA (38331C>A) TTC135TTT (38349C>T) GCT149GCC (38391T>C) AGA154AAA (38405G>A) GAG157CAG (38413G>C)
19464.4%53088.3%94 (100%)84 (89.4%)0/0/0/00
Protein mutations:
A6V (38434C>T) N24D (38487A>G) H25N (38490C>A) N29D (38502A>G) T31I (38509C>T) A32V (38512C>T) E35V (38521A>T 38522G>A) D53N (38574G>A) R83H (38665G>A)
Codon mutations:
ACC5ACG (38432C>G) GCG6GTG (38434C>T) ATC8ATA (38441C>A) CTG19TTG (38472C>T) AAT24GAT (38487A>G) CAT25AAT (38490C>A) AAC29GAC (38502A>G) ACC31ATC (38509C>T) GCC32GTC (38512C>T) GAG35GTA (38521A>T 38522G>A) GAT53AAT (38574G>A) GCA55GCT (38582A>T) GAC58GAT (38591C>T) TAC61TAT (38600C>T) AAC69AAT (38624C>T) CTC75CTT (38642C>T) GGT82GGG (38663T>G) CGT83CAT (38665G>A)
12743.5%14788.6%27 (100%)23 (85.2%)0/0/0/00
Protein mutations:
T3M (38624C>T) S9F (38642C>T) V16G (38663T>G) V17I (38665G>A)
Codon mutations:
ACG3ATG (38624C>T) TCC9TTC (38642C>T) GTC16GGC (38663T>G) GTA17ATA (38665G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43