Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Enterobacteria phage phiP27

Assembly

380 (1 contig(s))
16.6
63
4.07 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Enterobacteria phage phiP27 (Taxonomy ID: 103807)
94.4591
98.4848
1
58

Alignment

646.0 (NT) + 432.0 (AA) = 1078.0
91.9011
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT15646160250.9%64687.8%378 (99.2%)358 (94.0%)1/2
Mutations:
15681A>G 15695A>G 15703delG 15709G>A 15734C>A 15770C>T 15776A>C 15785C>A 15794A>G 15797T>A 15809G>T 15830T>C 15845C>T 15851T>G 15872T>C 15929_15930insA 15951C>G 15958T>C 15959G>A 15980T>C 15981G>C 15984G>A 16007delT
CDS
166100%43298.9%66 (100%)65 (98.5%)0/0/0/01
Protein mutations:
E22D (15776A>C)
Codon mutations:
ACC8ACA (15734C>A) GTC20GTT (15770C>T) GAA22GAC (15776A>C) ACC25ACA (15785C>A) GAA28GAG (15794A>G) ATT29ATA (15797T>A) ACG33ACT (15809G>T) TGT40TGC (15830T>C) ACC45ACT (15845C>T) CTT47CTG (15851T>G) GAT54GAC (15872T>C)
Proteins
166100%43298.9%66 (100%)65 (98.5%)0/0/0/01
Protein mutations:
E22D (15776A>C)
Codon mutations:
ACC8ACA (15734C>A) GTC20GTT (15770C>T) GAA22GAC (15776A>C) ACC25ACA (15785C>A) GAA28GAG (15794A>G) ATT29ATA (15797T>A) ACG33ACT (15809G>T) TGT40TGC (15830T>C) ACC45ACT (15845C>T) CTT47CTG (15851T>G) GAT54GAC (15872T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43