Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Traversvirus WGPS9

Assembly

317 (1 contig(s))
14.1
44
2.84 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Traversvirus WGPS9 (Taxonomy ID: 2844237)
92.1136
90.2439
2
70

Alignment

534.0 (NT) + 670.0 (AA) = 1204.0
86.8061
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT52950532660.6%53484.2%317 (100%)292 (92.1%)0/0
Mutations:
52952A>T 52954A>C 52956C>T 52996G>A 52998A>G 53003A>T 53009C>T 53013T>C 53014T>G 53026T>C 53032A>G 53039G>A 53040T>A 53043A>G 53044C>T 53066A>G 53081C>T 53220C>G 53223G>T 53226T>C 53227T>C 53228C>G 53229A>T 53230G>T 53234G>A
CDS
171100%37786.1%71 (100%)63 (88.7%)0/0/0/01
Protein mutations:
L2N (53228C>G 53229A>T 53230G>T) N3G (53226T>C 53227T>C) T4K (53223G>T) C5S (53220C>G) V64T (53043A>G 53044C>T) D65V (53039G>A 53040T>A) S68P (53032A>G) K70E (53026T>C)
Codon mutations:
CTG2AAC (53228C>G 53229A>T 53230G>T) AAC3GGC (53226T>C 53227T>C) ACA4AAA (53223G>T) TGT5TCT (53220C>G) GTG51GTA (53081C>T) GGT56GGC (53066A>G) GTA64ACA (53043A>G 53044C>T) GAC65GTT (53039G>A 53040T>A) TCT68CCT (53032A>G) AAG70GAG (53026T>C)
152100%29393.0%52 (100%)48 (92.3%)0/0/0/01
Protein mutations:
V45T (53043A>G 53044C>T) D46V (53039G>A 53040T>A) S49P (53032A>G) K51E (53026T>C)
Codon mutations:
GTG32GTA (53081C>T) GGT37GGC (53066A>G) GTA45ACA (53043A>G 53044C>T) GAC46GTT (53039G>A 53040T>A) TCT49CCT (53032A>G) AAG51GAG (53026T>C)
Proteins
171100%37786.1%71 (100%)63 (88.7%)0/0/0/01
Protein mutations:
L2N (53228C>G 53229A>T 53230G>T) N3G (53226T>C 53227T>C) T4K (53223G>T) C5S (53220C>G) V64T (53043A>G 53044C>T) D65V (53039G>A 53040T>A) S68P (53032A>G) K70E (53026T>C)
Codon mutations:
CTG2AAC (53228C>G 53229A>T 53230G>T) AAC3GGC (53226T>C 53227T>C) ACA4AAA (53223G>T) TGT5TCT (53220C>G) GTG51GTA (53081C>T) GGT56GGC (53066A>G) GTA64ACA (53043A>G 53044C>T) GAC65GTT (53039G>A 53040T>A) TCT68CCT (53032A>G) AAG70GAG (53026T>C)
152100%29393.0%52 (100%)48 (92.3%)0/0/0/01
Protein mutations:
V45T (53043A>G 53044C>T) D46V (53039G>A 53040T>A) S49P (53032A>G) K51E (53026T>C)
Codon mutations:
GTG32GTA (53081C>T) GGT37GGC (53066A>G) GTA45ACA (53043A>G 53044C>T) GAC46GTT (53039G>A 53040T>A) TCT49CCT (53032A>G) AAG51GAG (53026T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43