Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Human endogenous retrovirus K113

Assembly

428 (3 contig(s))
8.4
36
2.32 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Human endogenous retrovirus K113 (Taxonomy ID: 166122)
93.6916
90.3226
1
1

Alignment

748.0 (NT) + 160.0 (AA) = 908.0
88.1553
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT14187074.5%74887.4%428 (100%)401 (93.7%)0/0
Mutations:
141C>T 168A>C 175A>G 179G>A 198C>A 200G>A 241C>G 289A>C 296G>A 300G>A 309A>T 325G>A 8471C>T 8477T>C 8487G>A 8517C>A 8583A>C 8588T>C 8611A>G 8615T>G 8621A>G 8645C>T 8672A>C 8676C>A 8679A>G 8683G>A 8704G>A
CDS
6707004.4%16088.9%31 (100%)28 (90.3%)0/0/0/01
Protein mutations:
T674M (8471C>T) V676A (8477T>C) S689R (8517C>A)
Codon mutations:
ACG674ATG (8471C>T) GTG676GCG (8477T>C) TCG679TCA (8487G>A) AGC689AGA (8517C>A)
Proteins
6707004.4%16088.9%31 (100%)28 (90.3%)0/0/0/01
Protein mutations:
T674M (8471C>T) V676A (8477T>C) S689R (8517C>A)
Codon mutations:
ACG674ATG (8471C>T) GTG676GCG (8477T>C) TCG679TCA (8487G>A) AGC689AGA (8517C>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43