Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Peduovirus P24A7b

Assembly

700 (8 contig(s))
4.3
29
1.87 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Peduovirus P24A7b (Taxonomy ID: 2844219)
90.0
92.2414
0
48

Alignment

1120.0 (NT) + 1423.0 (AA) = 2543.0
87.1189
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT4987202832.1%112080.0%700 (100%)630 (90.0%)0/0
Mutations:
5009C>T 5097C>T 5133T>C 5178C>T 5313T>G 5367T>C 13853T>C 13865C>T 13868T>C 13874A>T 13877T>G 13880G>A 13886G>A 13887A>C 13889G>C 13891T>C 13892G>A 13895A>G 13901C>T 13904C>A 13912G>A 13913T>C 13925C>T 13934A>C 13940T>A 13944T>A 13945C>A 13967A>G 13973G>A 13982T>C 13983G>C 13984C>A 13985T>A 13986G>A 13991G>T 13998T>A 14002C>G 14003G>T 14004G>A 14006A>T 14007T>A 14008G>C 14009G>C 14010A>T 14011C>T 14012T>C 14016T>G 14017C>A 14018A>G 14020G>A 14021G>T 14024T>C 14027T>G 14033C>T 14034C>T 14036T>G 14037T>A 14039A>G 14040A>T 14041A>C 14042G>T 14045T>A 14054T>C 14057C>T 14060T>G 17632G>A 17650T>C 20235G>A 20256T>G 20283A>T
CDS
30435614.8%33896.0%53 (100%)52 (98.1%)0/0/0/00
Protein mutations:
P311L (5009C>T)
Codon mutations:
CCG311CTG (5009C>T) ATC340ATT (5097C>T) ACT352ACC (5133T>C)
127425.4%38993.1%63 (100%)62 (98.4%)0/0/0/00
3724448.3%45482.4%73 (100%)58 (79.5%)0/0/0/00
Protein mutations:
M387T (13891T>C 13892G>A) S394N (13912G>A 13913T>C) S405K (13944T>A 13945C>A) A418Q (13983G>C 13984C>A 13985T>A) V419I (13986G>A) S423T (13998T>A) T424S (14002C>G 14003G>T) G425S (14004G>A 14006A>T) W426T (14007T>A 14008G>C 14009G>C) T427F (14010A>T 14011C>T 14012T>C) S429E (14016T>G 14017C>A 14018A>G) G430D (14020G>A 14021G>T) L436M (14037T>A 14039A>G) K437S (14040A>T 14041A>C 14042G>T)
Codon mutations:
GGT374GGC (13853T>C) GTC378GTT (13865C>T) TTT379TTC (13868T>C) GGA381GGT (13874A>T) GGT382GGG (13877T>G) CTG383CTA (13880G>A) GGG385GGA (13886G>A) AGG386CGC (13887A>C 13889G>C) ATG387ACA (13891T>C 13892G>A) CAA388CAG (13895A>G) TAC390TAT (13901C>T) ACC391ACA (13904C>A) AGT394AAC (13912G>A 13913T>C) TAC398TAT (13925C>T) GGA401GGC (13934A>C) ACT403ACA (13940T>A) TCA405AAA (13944T>A 13945C>A) CAA412CAG (13967A>G) GAG414GAA (13973G>A) ATT417ATC (13982T>C) GCT418CAA (13983G>C 13984C>A 13985T>A) GTT419ATT (13986G>A) GGG420GGT (13991G>T) TCC423ACC (13998T>A) ACG424AGT (14002C>G 14003G>T) GGA425AGT (14004G>A 14006A>T) TGG426ACC (14007T>A 14008G>C 14009G>C) ACT427TTC (14010A>T 14011C>T 14012T>C) TCA429GAG (14016T>G 14017C>A 14018A>G) GGG430GAT (14020G>A 14021G>T) GAT431GAC (14024T>C) CTT432CTG (14027T>G) GAC434GAT (14033C>T) CTT435TTG (14034C>T 14036T>G) TTA436ATG (14037T>A 14039A>G) AAG437TCT (14040A>T 14041A>C 14042G>T) CCT438CCA (14045T>A) TAT441TAC (14054T>C) AGC442AGT (14057C>T) GTT443GTG (14060T>G)
418310.8%24295.7%43 (100%)42 (97.7%)0/0/0/00
Proteins
30435614.8%33896.0%53 (100%)52 (98.1%)0/0/0/00
Protein mutations:
P311L (5009C>T)
Codon mutations:
CCG311CTG (5009C>T) ATC340ATT (5097C>T) ACT352ACC (5133T>C)
127425.4%38993.1%63 (100%)62 (98.4%)0/0/0/00
Protein mutations:none
Codon mutations:
CAC8..T (5178C>T) CTT53CTG (5313T>G) GGT71GGC (5367T>C)
3724448.3%45482.4%73 (100%)58 (79.5%)0/0/0/00
Protein mutations:
M387T (13891T>C 13892G>A) S394N (13912G>A 13913T>C) S405K (13944T>A 13945C>A) A418Q (13983G>C 13984C>A 13985T>A) V419I (13986G>A) S423T (13998T>A) T424S (14002C>G 14003G>T) G425S (14004G>A 14006A>T) W426T (14007T>A 14008G>C 14009G>C) T427F (14010A>T 14011C>T 14012T>C) S429E (14016T>G 14017C>A 14018A>G) G430D (14020G>A 14021G>T) L436M (14037T>A 14039A>G) K437S (14040A>T 14041A>C 14042G>T)
Codon mutations:
GGT374GGC (13853T>C) GTC378GTT (13865C>T) TTT379TTC (13868T>C) GGA381GGT (13874A>T) GGT382GGG (13877T>G) CTG383CTA (13880G>A) GGG385GGA (13886G>A) AGG386CGC (13887A>C 13889G>C) ATG387ACA (13891T>C 13892G>A) CAA388CAG (13895A>G) TAC390TAT (13901C>T) ACC391ACA (13904C>A) AGT394AAC (13912G>A 13913T>C) TAC398TAT (13925C>T) GGA401GGC (13934A>C) ACT403ACA (13940T>A) TCA405AAA (13944T>A 13945C>A) CAA412CAG (13967A>G) GAG414GAA (13973G>A) ATT417ATC (13982T>C) GCT418CAA (13983G>C 13984C>A 13985T>A) GTT419ATT (13986G>A) GGG420GGT (13991G>T) TCC423ACC (13998T>A) ACG424AGT (14002C>G 14003G>T) GGA425AGT (14004G>A 14006A>T) TGG426ACC (14007T>A 14008G>C 14009G>C) ACT427TTC (14010A>T 14011C>T 14012T>C) TCA429GAG (14016T>G 14017C>A 14018A>G) GGG430GAT (14020G>A 14021G>T) GAT431GAC (14024T>C) CTT432CTG (14027T>G) GAC434GAT (14033C>T) CTT435TTG (14034C>T 14036T>G) TTA436ATG (14037T>A 14039A>G) AAG437TCT (14040A>T 14041A>C 14042G>T) CCT438CCA (14045T>A) TAT441TAC (14054T>C) AGC442AGT (14057C>T) GTT443GTG (14060T>G)
418310.8%24295.7%43 (100%)42 (97.7%)0/0/0/00
Protein mutations:none
Codon mutations:
CAG54CAA (17632G>A) GCT60GCC (17650T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43