Genome Detective

NGS Details (SRR3458562_Metagenome_example): Enterobacteria phage P7

Assembly

Coverage Length

500 (3 contig(s))

Depth Of Coverage

4.3

Number Of Reads

Reads Per Million

1.61 rpm (after QC)

Ambiguities

Assembly Method

de novo + reference guided assembly

Consensus Caller

Bcf Tools

Coverage Map

Map

Variant Tables

Consensus Variants

Download consensus variants (vcf)

Minority Variants

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SNP Variants Table

Download SNP mutations table (csv)

Annotated Variants Table

Download annotated variants table (csv)

Assignment

Type

Enterobacteria phage P7 (Taxonomy ID: 10682)

Reference Genome

NC_050152.1

NT Identity (%)

93.0

AA Identity (%)

80.0

Number Of Stop Codons

Number Of CDS

113

Alignment

Alignment Score

860.0 (NT) + 1163.0 (AA) = 2023.0

Concordance (%)

82.3362

Alignment Method

Local, heuristic, nucleotide (BLASTN)

NT Alignment

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Region Bam File

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CDS Alignment

Download CDS alignment (FASTA)

Consensus Sequence

Download consensus sequence (FASTA) (Including IUPAC ambiguity codes)

Consensus Contigs

Download consensus contigs (FASTA)

Genome Region

Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".

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Alignment Detailed Statistics


	Begin	End	Coverage	Score	Concordance	Matches	Identities	I/D/M/F^*	Stop Codons
NT	6475	91817	0.5%	860	86.0%	500 (100%)	465 (93.0%)	0/0
Mutations:	6527G>A 6540T>C 6575T>C 6578T>C 6942A>C 6947T>G 6956T>G 6964T>C 6967T>G 6978A>C 6999A>C 7025T>G 7105C>T 91673A>C 91730T>C 91741C>A 91770C>T 91772C>G 91773A>G 91778A>G 91786G>T 91787T>G 91789A>T 91794T>A 91795A>T 91797C>A 91798G>C 91799T>C 91800T>G 91802G>T 91803T>C 91804T>G 91806G>T 91807A>G 91809T>A

^*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43