Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Escherichia phage TL-2011b

Assembly

2146 (5 contig(s))
21.9
491
31.68 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Escherichia phage TL-2011b (Taxonomy ID: 1124654)
96.7922
98.2759
3
57

Alignment

4004.0 (NT) + 1108.0 (AA) = 5112.0
94.7544
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT41245447834.8%400493.6%2144 (99.6%)2082 (96.7%)7/2
Mutations:
41269T>G 41271_41272delAT 41321_41322insT 41325T>C 41327C>A 41334C>T 41340C>T 41359A>T 41363A>G 41375G>A 41378C>T 41384G>A 41399G>A 41870C>T 41936A>G 41969T>C 42026A>G 42353G>A 42463A>G 42607A>G 42616A>G 42620A>T 42629G>A 42678T>C 42679C>T 42706A>G 42726A>G 42768G>T 42845C>G 43544A>C 43571_43572insATCATT 43595C>T 43601T>C 43633C>G 43652T>A 43653A>C 43712A>G 43721A>G 43751T>C 43760T>C 43775T>C 43796A>G 43814C>T 43847A>G 43859A>G 43913C>T 43931G>A 43932C>A 43959T>C 43961G>A 43997A>G 44015T>C 44081T>A 44082C>T 44238A>C 44324G>A 44335T>C 44390C>T 44447C>A 44504A>G 44582C>A 44672G>A 44675C>G 44726G>A 44777A>G
CDS
118016.1%17995.7%29 (100%)28 (96.6%)0/0/0/01
117258.1%63196.9%100 (100%)99 (99.0%)0/0/0/01
206470.3%29896.8%45 (100%)44 (97.8%)0/0/0/01
Protein mutations:
G31R (42845C>G)
Codon mutations:
GGC31CGC (42845C>G) TCC56TCA (42768G>T)
Proteins
118016.1%17995.7%29 (100%)28 (96.6%)0/0/0/01
Protein mutations:none
Codon mutations:
TTG10TTA (41870C>T) GGC167GGT (41399G>A) AAC172AAT (41384G>A) TCG174TCA (41378C>T) GAC175GAT (41375G>A) AAT179AAC (41363A>G)
117258.1%63196.9%100 (100%)99 (99.0%)0/0/0/01
Protein mutations:none
Codon mutations:
GAC26GAT (42353G>A) TCT135TCC (42026A>G) ACA154ACG (41969T>C) ACT165ACC (41936A>G)
206470.3%29896.8%45 (100%)44 (97.8%)0/0/0/01
Protein mutations:
G31R (42845C>G)
Codon mutations:
GGC31CGC (42845C>G) TCC56TCA (42768G>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43