Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Traversvirus II

Assembly

251 (6 contig(s))
9.8
23
1.48 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Traversvirus II (Taxonomy ID: 1981164)
84.0637
82.9932
2
170

Alignment

342.0 (NT) + 878.0 (AA) = 1220.0
81.6054
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT50298564100.4%34268.1%251 (100%)211 (84.1%)0/0
Mutations:
50298G>C 50299C>A 50306T>C 50309T>C 50330C>A 50336C>T 50340A>G 50342T>C 50345C>T 50363G>A 50366A>G 50399A>G 50402C>T 50456G>T 50462C>T 50467A>C 50468A>T 50471C>G 50477G>A 50478G>A 50479C>T 50480T>G 50481G>C 50489G>A 50492A>C 50498T>C 50501T>A 50502C>A 50504C>T 50506C>T 50507A>C 56250T>G 56339A>T 56342A>G 56343G>A 56352A>T 56358C>T 56396T>G 56404C>T 56408T>C
CDS
701269.5%12753.8%23 (100%)19 (82.6%)0/0/0/00
Protein mutations:
I79V (50340A>G 50342T>C) A125M (50478G>A 50479C>T 50480T>G)
Codon mutations:
GCT65CA. (50298G>C 50299C>A) GTT67..C (50306T>C) TTT68..C (50309T>C) CGC75CGA (50330C>A) AGC77AGT (50336C>T) ATT79GTC (50340A>G 50342T>C) GTC80GTT (50345C>T) CCG86CCA (50363G>A) GAA87GAG (50366A>G) GAA98..G (50399A>G) CTC99..T (50402C>T) GCG117..T (50456G>T) GAC119..T (50462C>T) GAA121.CT (50467A>C 50468A>T) GAC122..G (50471C>G) AAG124..A (50477G>A) GCT125ATG (50478G>A 50479C>T 50480T>G) GAA126C.. (50481G>C) GAG128..A (50489G>A) AAA129..C (50492A>C) CTT131..C (50498T>C) GCT132..A (50501T>A) CTC133A.T (50502C>A 50504C>T) GCA134.TC (50506C>T 50507A>C)
4910721.7%5520.8%25 (100%)14 (56.0%)0/0/2/00
Protein mutations:
S49H (50478G>A 50479C>T 50480T>G) F87L (50366A>G) R88W (50363G>A) D94N (50345C>T) N95D (50340A>G 50342T>C) A97T (50336C>T) A99S (50330C>A)
Codon mutations:
TGC40GA. (50506C>T 50507A>C) GAG41A.T (50502C>A 50504C>T) AGC42T.. (50501T>A) AAG43G.. (50498T>C) TTT45G.. (50492A>C) CTC46T.. (50489G>A) TTC48..G (50481G>C) AGC49CAT (50478G>A 50479C>T 50480T>G) CTT50T.. (50477G>A) GTC52C.. (50471C>G) TTC53AG. (50467A>C 50468A>T) GTC55A.. (50462C>T) CGC57A.. (50456G>T) GAG75A.. (50402C>T) TTC76C.. (50399A>G) TTC87CTC (50366A>G) CGG88TGG (50363G>A) GAC94AAC (50345C>T) AAT95GAC (50340A>G 50342T>C) GCT97ACT (50336C>T) GCG99TCG (50330C>A) AAA106G.. (50309T>C) AAC107G.. (50306T>C) AGC109.TG (50298G>C 50299C>A)
5616158.7%41388.1%55 (100%)49 (89.1%)0/0/0/01
Protein mutations:
E591V (56339A>T) E592G (56342A>G 56343G>A) L610* (56396T>G) P613S (56404C>T) V614A (56408T>C)
Codon mutations:
GGT561GGG (56250T>G) GAG591GTG (56339A>T) GAG592GGA (56342A>G 56343G>A) CCA595CCT (56352A>T) TTC597TTT (56358C>T) TTA610TGA (56396T>G) CCA613TCA (56404C>T) GTT614GCT (56408T>C)
25429714.8%28392.2%44 (100%)40 (90.9%)0/0/0/01
Protein mutations:
A256T (56404C>T) G271E (56358C>T) L273Q (56352A>T) T276I (56342A>G 56343G>A)
Codon mutations:
GAA254GAG (56408T>C) GCC256ACC (56404C>T) CTA258CTC (56396T>G) GGA271GAA (56358C>T) CTG273CAG (56352A>T) ACT276ATC (56342A>G 56343G>A) CCT277CCA (56339A>T)
Proteins
701269.5%12753.8%23 (100%)19 (82.6%)0/0/0/00
Protein mutations:
I79V (50340A>G 50342T>C) A125M (50478G>A 50479C>T 50480T>G)
Codon mutations:
GCT65CA. (50298G>C 50299C>A) GTT67..C (50306T>C) TTT68..C (50309T>C) CGC75CGA (50330C>A) AGC77AGT (50336C>T) ATT79GTC (50340A>G 50342T>C) GTC80GTT (50345C>T) CCG86CCA (50363G>A) GAA87GAG (50366A>G) GAA98..G (50399A>G) CTC99..T (50402C>T) GCG117..T (50456G>T) GAC119..T (50462C>T) GAA121.CT (50467A>C 50468A>T) GAC122..G (50471C>G) AAG124..A (50477G>A) GCT125ATG (50478G>A 50479C>T 50480T>G) GAA126C.. (50481G>C) GAG128..A (50489G>A) AAA129..C (50492A>C) CTT131..C (50498T>C) GCT132..A (50501T>A) CTC133A.T (50502C>A 50504C>T) GCA134.TC (50506C>T 50507A>C)
4910721.7%5520.8%25 (100%)14 (56.0%)0/0/2/00
Protein mutations:
S49H (50478G>A 50479C>T 50480T>G) F87L (50366A>G) R88W (50363G>A) D94N (50345C>T) N95D (50340A>G 50342T>C) A97T (50336C>T) A99S (50330C>A)
Codon mutations:
TGC40GA. (50506C>T 50507A>C) GAG41A.T (50502C>A 50504C>T) AGC42T.. (50501T>A) AAG43G.. (50498T>C) TTT45G.. (50492A>C) CTC46T.. (50489G>A) TTC48..G (50481G>C) AGC49CAT (50478G>A 50479C>T 50480T>G) CTT50T.. (50477G>A) GTC52C.. (50471C>G) TTC53AG. (50467A>C 50468A>T) GTC55A.. (50462C>T) CGC57A.. (50456G>T) GAG75A.. (50402C>T) TTC76C.. (50399A>G) TTC87CTC (50366A>G) CGG88TGG (50363G>A) GAC94AAC (50345C>T) AAT95GAC (50340A>G 50342T>C) GCT97ACT (50336C>T) GCG99TCG (50330C>A) AAA106G.. (50309T>C) AAC107G.. (50306T>C) AGC109.TG (50298G>C 50299C>A)
5616158.7%41388.1%55 (100%)49 (89.1%)0/0/0/01
Protein mutations:
E591V (56339A>T) E592G (56342A>G 56343G>A) L610* (56396T>G) P613S (56404C>T) V614A (56408T>C)
Codon mutations:
GGT561GGG (56250T>G) GAG591GTG (56339A>T) GAG592GGA (56342A>G 56343G>A) CCA595CCT (56352A>T) TTC597TTT (56358C>T) TTA610TGA (56396T>G) CCA613TCA (56404C>T) GTT614GCT (56408T>C)
25429714.8%28392.2%44 (100%)40 (90.9%)0/0/0/01
Protein mutations:
A256T (56404C>T) G271E (56358C>T) L273Q (56352A>T) T276I (56342A>G 56343G>A)
Codon mutations:
GAA254GAG (56408T>C) GCC256ACC (56404C>T) CTA258CTC (56396T>G) GGA271GAA (56358C>T) CTG273CAG (56352A>T) ACT276ATC (56342A>G 56343G>A) CCT277CCA (56339A>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43