Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Lambdavirus HK630

Assembly

233 (1 contig(s))
7.2
19
1.23 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Lambdavirus HK630 (Taxonomy ID: 2169969)
84.4828
86.2069
1
69

Alignment

310.0 (NT) + 321.0 (AA) = 631.0
75.9326
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT22194224260.5%31068.3%232 (99.6%)196 (84.1%)0/1
Mutations:
22195G>C 22200T>A 22202G>T 22203C>T 22211C>T 22222G>A 22225T>G 22236C>T 22249T>C 22266C>G 22267C>A 22279A>G 22282C>A 22288G>T 22291G>A 22300G>A 22304C>T 22309C>T 22351T>A 22352G>A 22353T>A 22354C>T 22360T>C 22362T>G 22372G>A 22375T>G 22376T>G 22378T>A 22379G>T 22380delA 22392A>C 22397T>C 22403A>C 22405A>G 22406T>G 22412T>G 22425A>T
CDS
13819529.7%32183.8%58 (100%)50 (86.2%)0/0/0/01
Protein mutations:
V139E (22200T>A) A140F (22202G>T 22203C>T) H143Y (22211C>T) A151V (22236C>T) T161R (22266C>G 22267C>A) K168N (22288G>T) V190N (22352G>A 22353T>A 22354C>T) M193R (22362T>G)
Codon mutations:
ATG137.TC (22195G>C) GTA139GAA (22200T>A) GCC140TTC (22202G>T 22203C>T) CAT143TAT (22211C>T) CCG146CCA (22222G>A) CTT147CTG (22225T>G) GCA151GTA (22236C>T) ATT155ATC (22249T>C) ACC161AGA (22266C>G 22267C>A) GAA165GAG (22279A>G) GCC166GCA (22282C>A) AAG168AAT (22288G>T) AAG169AAA (22291G>A) GTG172GTA (22300G>A) CTG174TTG (22304C>T) AAC175AAT (22309C>T) GCT189GCA (22351T>A) GTC190AAT (22352G>A 22353T>A 22354C>T) GTT192GTC (22360T>C) ATG193AGG (22362T>G)
Proteins
13819529.7%32183.8%58 (100%)50 (86.2%)0/0/0/01
Protein mutations:
V139E (22200T>A) A140F (22202G>T 22203C>T) H143Y (22211C>T) A151V (22236C>T) T161R (22266C>G 22267C>A) K168N (22288G>T) V190N (22352G>A 22353T>A 22354C>T) M193R (22362T>G)
Codon mutations:
ATG137.TC (22195G>C) GTA139GAA (22200T>A) GCC140TTC (22202G>T 22203C>T) CAT143TAT (22211C>T) CCG146CCA (22222G>A) CTT147CTG (22225T>G) GCA151GTA (22236C>T) ATT155ATC (22249T>C) ACC161AGA (22266C>G 22267C>A) GAA165GAG (22279A>G) GCC166GCA (22282C>A) AAG168AAT (22288G>T) AAG169AAA (22291G>A) GTG172GTA (22300G>A) CTG174TTG (22304C>T) AAC175AAT (22309C>T) GCT189GCA (22351T>A) GTC190AAT (22352G>A 22353T>A 22354C>T) GTT192GTC (22360T>C) ATG193AGG (22362T>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43