Genome Detective

NGS Details (SRR3458562_Metagenome_example): Bellamyvirus bellamy

Assembly

Coverage Length

195 (1 contig(s))

Depth Of Coverage

6.2

Number Of Reads

Reads Per Million

0.90 rpm (after QC)

Ambiguities

Assembly Method

de novo + reference guided assembly

Consensus Caller

Bcf Tools

Coverage Map

Map

Variant Tables

Consensus Variants

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Minority Variants

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SNP Variants Table

Download SNP mutations table (csv)

Annotated Variants Table

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Assignment

Type

Bellamyvirus bellamy (Taxonomy ID: 2734095)

Reference Genome

NC_047838.1

NT Identity (%)

77.9487

AA Identity (%)

84.6154

Number Of Stop Codons

Number Of CDS

269

Alignment

Alignment Score

218.0 (NT) + 432.0 (AA) = 650.0

Concordance (%)

76.1124

Alignment Method

Local, heuristic, nucleotide (BLASTN)

NT Alignment

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Region Bam File

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CDS Alignment

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Consensus Sequence

Download consensus sequence (FASTA) (Including IUPAC ambiguity codes)

Consensus Contigs

Download consensus contigs (FASTA)

Genome Region

Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".

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Alignment Detailed Statistics


	Begin	End	Coverage	Score	Concordance	Matches	Identities	I/D/M/F^*	Stop Codons
NT	196649	196843	0.1%	218	55.9%	195 (100%)	152 (77.9%)	0/0
Mutations:	196652G>A 196655A>T 196656A>T 196670C>T 196671C>T 196673C>A 196676C>T 196677G>A 196685C>T 196691A>T 196700C>A 196703C>T 196706A>T 196712C>T 196718T>C 196724C>T 196725A>G 196727T>A 196728A>G 196733T>C 196734G>A 196739A>G 196748T>A 196749C>A 196751G>T 196757C>T 196763A>T 196766C>T 196767G>A 196769A>C 196770C>A 196778C>T 196782G>A 196783G>A 196784T>C 196787G>T 196805C>T 196808G>A 196811C>T 196820C>T 196829A>T 196832C>A 196838C>A

^*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43