Genome Detective

Genome Region

Sequence starts at position 1069 and ends at position 5420 relative to NC_022517.1 reference sequence.

NC_022517.1

SRR3458562_Metagenome_example-NC_022517.1-63-0

NC_022517.1

SRR3458562_Metagenome_example-NC_022517.1-63-0

AAATGAAAAGTAAAACTTTTAGGCCCTCCCCGTAAATGGTTCTGTTTGTTCGTGGCGCAGGCAGAGTTTGTTGCAAGGCTTGATGTAAGACTCGTTACTAAATGATTAACTGCCTTTGTTCTGCTTCTGTAAAACTGCTTTCCCGCCCTCCGAATTGTAAAACAAGCCCTGCCTCAGCCGGAAATTCCAAACCAGTATGCTAAAGGTGGCGGGGCCCGACCGCTGCAACCCAGACCCAAGGTTGCATCAGCGAAGGAAAACTGCATTCCCCAGACCTCCCCGGGGCTAGCACCTATCCCACCCCTTTGCGTCGCCAAATAGAAAAAGACACCTGGCCTCGAGGTTACGAAAGAGGCCAATCAATAGCCTGTATGCAAATAAAGCCTAAACGCTATAAAAGAGATGTATCGCCACAAATCGGGGCTCTCTCTCTCTCTACCACATTCCTTAGAGGGAGGGCCCTGGTGCACCAGTAAACGACTTTCTGCCGAAATTTGTGTGTTGGGTGGTTCCTCGCGCCGACTCTCAAACCCTAAGGAACGTGATTCTAACATCTGGGGGCTCGTCCGGGATTTGAGAGGCGGCCAGAGGACACCGGCCCCTTTTCCTTTTCGGCAGAAACCGCGCGGCCCCGGCCACCGGTGGCGGACGGACGACGGGACGACTCTTGTGTGTAGTCAGGTACTTTATTTTTGTTCTGTCTTTAATCTCTGAGGTCGGCCAACCTTCGTAGGAGTGTAGAGGGAGGACAGACGTGTCCTGGACCCTCACACTCCGACCCCGGGGGACGCCCCGGCGGTCGTCTGGAGGAAGGCTGATGACACCGTCAGCCTCCTCAAATCTGAAGGCAGGTTCCCCCTGCCATCTGAATCACTTGTAGTACTTTGGCGCCATTCTCTGGCCGCGCGGCTCATCTGTTTTTGTCTGGTTTGTGTTGTTACTGTTGTCTTATTTATATGTGTGTATGAGCCTAAGGACGGGACAATGGGACAGACGCTAA

CAACTCCTCTATCTTTGACTTTGACGCACTTTTCAGACGTCCGGGCCAGAGCCCACAATCTTTCCGTAGGAGTCCGAAAAGGACGATGGCAAACTTTCTGCTCGTCCGAGTGGCCCACCCTTCATGTCGGGTGGCCCCGGGACGGAACTTTTGACCTCTCCGTTATTTTGCAGGTTAAGACAAAGGTAATGGATCCTGGGCCGCATGGTCACCCGGACCAAGTGGCCTACATCATCACCTGGGAGGATCTCGTCCGAAATCCTCCGCCTTGGGTGAAACCCTTTCTCCATACCCCTTCTACATCCAAGTCCACCCTCCTTGCCCTAGAAGTCCCAAAGAACCGGACCCTGGATCCGCCTAAACCCGTACTCCCGGATGAGTCGCAGCAAGACCTCCTCTTCCAAGACCCTCTACCTCATCCACCACATAATCCCCTCCTGGAACCCCCACCCTACAACTCACCCTCGCCCCCTGTCTTGTCCCCCGTTTCTCCTACCACCCCTTCTGCCCCCACTCCTTCCTCTCTTGTCTCCTCGTCGACCCCGCCTTCCTCTCCAGCCCCACCTGAACTCACCCCCAGGACCCCGCCACAAACCCCCCGTCTCCGCCTCCGGCGGGCCGAAGGTCAGGATGGCCCTTCCACCTGGCAATCTTCCCTTTTTCCCCTTCGCACGGTCAACCGCACGATCCAGTACTGGCCCTTTTCTGCCTCGGACCTCTATAATTGGAAAACCCATAACCCCTCCTTTTCCCAAGACCCCCAGGCCTTGACCTCGTTGATAGAATCAATTCTCCTCACCCACCAGCCTACCTGGGATGATTGTCAACAGCTTTTGCAGGTCCTTCTAACCACCGAAGAAAGGCAGCGAGTCCTCCTGGAAGCCCGGAAAAATGTGCCGGGGCCTGGAGGCCTTCCAACCCAGCTCCCCAATGAAATAGACGAGGGATTTCCCCTCACCCGCCCGGACTGGGATTATGAGACAGCACCGGGTAGGGAGAG

TCTCCGAATCTATCGCCAGGCTCTGTTGGCGGGTCTCAAGGGGGCAGGAAAACGCCCCACCAATTTGGCCAAGGTAAGGACTATAACTCAGGGAAAAGATGAAAGCCCGGCAGCCTTTATGGAAAGACTTCTGGAAGGGTTTCGAATGTATACTCCATTTGATCCAGAAGCACCAGAACACAAGGCTACCGTGGCCATGTCGTTCATAGATCAGGCAGCACTAGACATAAAAGGAAAACTCCAAAGGCTAGACGGGATCCAAACTCATGGGCTGCAGGAATTAGTAAGGGAGGCAGAAAAGGTATACAATAAAAGGGAAACCCCAGAAGAAAGAGAAGCTAGGCTTATAAAAGAACAGGAAGAACGGGAAGATCGGAGAGACAGAAAAAGAGATAAGCATTTAACCAAAATCCTGGCAGCCGTAGTGACTGAAAAAAGGGCAGGAAAGTCAGGGGAAACAAGAAGGCGGCCTAAAGTAGATAAGGACCAGTGCGCCTACTGCAAAGAGCGAGGGCATTGGATCAAGGACTGCCCCAAGCGTCCTAGAGACCAGAAGAAACCCGCCCCTGTCCTCACCTTAGGTGAGGACAGCGAATAGGGGTGTCAGGGCTCTGGAGCCCCCCCCGAGCCCCGGCTAACTCTATCTGTAGGGGGGCATCCCACCACCTTCTTGGTGGACACAGGCGCCCAACACTCGGTTTTGACCAAGGCAAACGGACCCCTGTCCTCTCGTACATCTTGGGTCCAGGGGGCAACAGGAAGAAAGATGCACAAATGGACTAACCGCCGGACAGTTAACCTAGGGCAAGGAATGGTGACACACTCCTTCTTGGTGGTACCTGAATGTCCGTACCCCCTTCTGGGGCGAGATCTCCTAACCAAACTCGGAGCTCAGATCCACTTCTCCGAGGCAGGGGCCCAGGTGTTAGACCGAGATGGCCAACCCATCCAAATTTTGACTGTGTCTCTGCAAGATGAACACCGGCTTTTTGACATCCCG

GTCACCACCAGCCTCCCTGATGTCTGGTTACAAGATTTTCCCCAAGCTTGGGCGGAAACGGGAGGACTTGGGCGGGCCAAGTGTCAAGCCCCAATCATAATTGATCTAAAGCCCACAGCGGTGCCTGTATCTATCAAACAATACCCCATGAGCCTAGAAGCTCATATGGGCATTCGGCAACACATTATCAAATTTCTAGAACTTGGAGTTTTGCGACCTTGTCGCTCACCCTGGAATACTCCTCTTCTGCCAGTAAAAAAGCCTGGTACCCAGGATTACAGGCCCGTCCAAGATTTGAGAGAAATTAATAAAAGAACTGTGGATATCCACCCTACGGTCCCCAATCCTTACAACTTGCTCAGTACCTTAAAACCAGACTACAGCTGGTATACCGTACTGGACTTAAAAGATGCCTTCTTTTGTTTACCCCTGGCCCCCCAAAGCCAGGAACTATTTGCCTTTGAGTGGAAGGACCCTGAGAGAGGAATCTCAGGCCAATTGACCTGGACTCGACTTCCCCAGGGGTTCAAAAACTCTCCCACTCTCTTCGATGAGGCTCTCCACAGGGACCTCACCGACTTCCGGACCCAGCATCCAGAAGTGACCCTGCTCCAGTATGTAGATGACCTCCTCTTGGCGGCCCCCACAAAGAAAGCCTGCACGCAAGGTACTAGGCATCTACTCCAGGAACTAGGTGAGAAAGGATACCGGGCATCTGCCAAGAAGGCACAAATTTGTCAGACCAAGGTAACTTACCTGGGGTACATACTGAGTGAGGGAAAAAGGTGGCTCACCCCTGGGCGCATAGAGACTGTGGCTCGCATTCCACCGCCCCGGAATCCCAGAGAGGTGCGTGAATTCCTGGGAACTGCTGGGTTCTGTCGCTTGTGGATACCCGGTTTTGCTGAATTGGCCGCCCCCCTTTACGCACTCACCAAGGAAAGCACCCCTTTCACCTGGCAGACAGAGCATCAATTGGCTTTTGAGGCACTAAAAAAGG

CACTCTTGTCTGCCCCAGCCCTTGGGTTACCGGACACCTCAAAGCCCTTTACCCTCTTCCTGGACGAAAGGCAAGGGATTGCCAAAGGAGTCCTGACCCAAAAATTGGGGCCTTGGAAAAGACCGGTAGCATACCTGTCCAAGAAGCTGGACCCTGTGGCGGCCGGCTGGCCCCCATGTCTTCGTATCATGGCAGCCACCGCTATGCTGGTCAAAGACTCTGCTAAGTTAACCCTTGGGCAGCCACTGACTGTTATTACTCCACATACTCTAGAGGCCATAGTGCGGCAGCCCCCGGACCGGTGGATAACCAACGCACGCCTAACCCACTACCAGGCCCTCTTACTGGACACGGACCGCGTCCAGTTTGGCCCTCCGGTCACCCTAAACCCTGCTACGCTGCTGCCGGTACCAGAAAACCAACCAAGCCCACACGATTGTCGGCAAGTACTGGCTGAGACCCATGGAACACGAGAAGACCTTAAAGACCAAGAGCTCCCAGACGCGGATCACACCTGGTACACAGACGGCAGCAGTTACCTTGACTCAGGTACTCGGAGGGCGGGAGCAGCGGTAGTAGACGGACACAATACCATTTGGGCACAATCACTACCTCCTGGCACGTCTGCACAGAAGGCTGAGTTAATAGCACTAACCAAGGCCCTAGAGCTGTCCAAGGGAAAGAAAGCTAACATTTATACTGATAGCCGATATGCCTTTGCAACGGCTCATACTCATGGAAGTATCTATGAAAGAAGAGGTCTCCTAACCTCAGAAGGAAAGGAAATCAAGAACAAAGCTGAAATAATTGCCTTATTAAAGGCCCTTTTTCTTCCTCAAGAAGTGGCTATAATTCACTGCCCCGGGCATCAGAAAGGACAGGATCCAGTCGCAGTAGGAAACAGACAGGCTGACCGAGTGGCCAGGCAAGCCGCCATGGCGGAAGTACTGACCCTAGCCACAGAACCTGACAACACCAGCCACATAACTATTGAACATAC

TTATACCTCCGAAGACCAGGAAGAAGCAAGAGCCATAGGGGCTACAGAAAACAAAGACACTAGAAACTGGGAAAAAGAAGGGAAAATAGTCCTTCCCCAAAAGGAAGCCCTGGCAATGATCCAGCAGATGCATGCCTGGACACACTTGGGTAATCGAAAGCTAAAATTGTTAATTGAAAAAACTGACTTTCTAATCCCAAGGGCAAGTACACTCATAGAGCAAGTGACATCTGCCTGTAAGGTCTGTCAGCAGGTAAACGCTGGGGCTACCCGAGTGCCAGCAGGGAAACGGACTCGTGGTAACCGCCCGGGAGTCTATTGGGAAATAGACTTCACTGAAGTAAAACCTCACTATGCTGGGTATAAGTACTTACTAGTGTTTGTAGATACCTTTTCAGGATGGGTAGAAGCCTTTCCCACCCGGCAAGAAACGGCACACATAGTAGCCAAGAAGATCCTAGAAGAAATCTTTCCTAGATTTGGACTTCCCAAGGTAATTGGGTCAGACAACGGGCCGGCCTTCGTTTCCCAGGTAAGTCAGGGGCTAGCCAGGATACTGGGGATTAATTGGAAATTGCATTGTGCTTATAGACCCCAGAGCTCAGGACAGGTAGAGAGAATGAATAGAACAATAAAAGAGACCCTTACTAAATTGACCTTAGAGACTGGCTTAAAAGATTGGAGACGCCTCCTATCTCTAGCTCTATTAAGAGCCCGGAATACGCCTAACCGCTTTGGGCTCACTCCATATGAAATCCTCTATGGAGGACCTCCCCCTTTGTCAACCTTACTTAACTCCTTTTCTCCCTCCAATTCTAAGACTGACCTACAGGCCCGGCTAAAAGGACTACAAGCAGTACAGGCCCAAATCTGGGCCCCCTTGGCAGAACTGTACCGGCCAGGACATTCGCAGACCAGCCACCCCTTCCAGGTGGGGGACTCCGTCTACGTTAGACGACACCGTTCTCAGGGACTGGAGCCTCGGTGGAAAGGACCCTAC

ATTGTTCTCCTGACCACACCCACAGCCATAAAGGTTGACGGAATCGCCACGTGGATTCACGCATCCCACGCCAAGGCTGCTCCAGGGACGCCTGGACCGACGTCGTCCGGAACTTGGAGACTCCGCCGCTCCGAGGACCCCCTTAAGATAAGACTCTCACGCACTTGACTTCTTACTTGCCCTTGTCCTCCTACCCCGCGCCGTACATAGCAGTAACCCCTCATATAGTCCAAGATGGGATTCACAACAAAGATAATCTTCTTATACAACCTAGTACTGGTCTACGCGGGGTTTGACGACCCTCGCAAAGCCATAGAACTAGTACAAAAGCGATATGGCCGACCATGCGATTGCAGCGGAGGACAAGTGTCCGAGCCCCCGTCAGACAGGGTCAGTCAAGTGACTTGCTCAGGCAAGACAGCTTACTTAATGCCCGACCAAAGATGGAAATGTAAGTCAATTCCAAAAGACACCTCCCCAAGCGGGCCACTCCAAGAGTGCCCCTGTAATTCTTACCAGTCCTCAGTACACAGTTCTTGTTATACCTCATACCAACAATGCAGATCAGGCAATAAGACATATTATACGGCTACTCTGCTAAAAACACAAACTGGGGGCACCAGTGATGTACAAGTATTAGGATCCACCAACAAACTTATACAATCTCCCTGTAATGGCATAAAAGGGCAGTCTATTTGCTGGAGCACTACAGCTCCTATCCACGTCTCTGATGGAGGAGGTCCATTAGACACCACAAGAATTAAAAGTGTTCAGAGAAAACTGGAAGAAATTCATAAAGCCCTATATCCTGAACTTCAGTATCACCCTTTGGCCATACCTAAGGTTAGAGATAACCTCATGGTCGATGCCCAGACTTTAAACATTCTCAATGCCACTTACAACTTACTCCTAATGTCCAACACGAGCCTAGTGGACGACTGTTGGCTTTGTTTAAAATTAGGTCCCCCTACTCCCCTCGCAATACCTAACTTCCTATTAT

CCTACGTGACTCGCTCCTCGGATAATATCTCTTGTTTAATAATTCCCCCCCTTCTAGTTCAACCGATGCAGTTTTCCAATTCATCTTGCCTCTTTTCCCCCTCCTACAACAGTACAGAAGAAATAGATCTAGGCCATGTTGCCTTCAGCAACTGTACCTCCATAACCAATGTCACCGGTCCCATATGCGCTGTAAATGGTTCGGTCTTTCTCTGTGGCAATAACATGGCATACACTTATCTACCCACGAACTGGACGGGGCTTTGCGTCCTAGCAACTCTCCTCCCCGACATTGACATCATTCCCGGAGATGAACCGGTCCCCATCCCTGCTATTGATCATTTTATATATAGACCTAAACGGGCCATACAGTTTATTCCTTTACTAGCAGGGCTAGGGATCACCGCAGCCTTCACAACAGGAGCTACAGGCCTAGGTGTCTCTGTGACCCAATATACAAAATTATCTAATCAGCTAATTTCTGATGTACAAATCTTATCTAGCACCATACAAGATCTGCAAGATCAAGTAGACTCATTAGCCGAAGTGGTTCTCCAGAACAGAAGGGGGCTAGATCTACTTACAGCAGAACAAGGAGGAATCTGTTTAGCCCTGCAAGAAAAATGCTGCTTTTATGTTAACAAGTCAGGGATTGTGAGAGACAAAATAAAAACCTTACAAGAAGAACTAGAAAGACGTAGAAAAGATCTAGCTTCCAACCCACTTTGGACTGGGCTTCAAGGGCTCCTCCCTTACCTCCTGCCCTTTCTTGGCCCTCTACTTACCCTCCTGCTCTTACTCACCATTGGGCCGTGCATTTTTAACCGTCTAACCGCTTTTATTAATGATAAGTTAAACATAATACACGCTATGGTGCTAACCCAACAGTATCAGGTGCTCAGAACCGATGAAGAAGCTCAAGATTGAGCCTCTAAGACACAAGAAAAGGGGGAAAATGAAAAGTAAAACTTTTAGGCCCTCCCCGTAAATGGTTCTGTTTG

TTCGTGGCGCAGGCAGAGTTTGTTGCAAGGCTTGATGTAAGACTCGTTACTAAATGATTAACTGCCTTTGTTCTGCTTCTGTAAAACTGCTTTCCCGCCCTCCGAATTGTAAAACAAGCCCTGCCTCAGCCGGAAATTCCAAACCAGTATGCTAAAGGTGGCGGGGCCCGACCGCTGCAACCCAGACCCAAGGTTGCATCAGCGAAGGAAAACTGCATTCCCCAGACCTCCCCGGGGCTAGCACCTATCCCACCCCTTTGCGTCGCCAAATAGAAAAAGACACCTGGCCTCGAGGTTACGAAAGAGGCCAATCAATAGCCTGTATGCAAATAAAGCCTAAACGCTATAAAAGAGATGTATCGCCACAAATCGGGGCTCTCTCTCTCTCTACCACATTCCTTAGAGGGAGGGCCCTGGTGCACCAGTAAACGACTTTCTGCCGAAATTTGTGTGTTGGGTGGTTCCTCGCGCCGACTCTCAAACCCTAAGGAACGTGATTCTAACATC

........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

....................................................................GGAGTCCGAAAAGGGAAATTTCAGACTTACTGCATGTCAGAATGGCCAAACYTYSAYGTRGRRTGGCCCCAAGAMGGAACWTTYSACCTMYCYATTATYTTRYAGGTYAAAG....A..G...A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

.........................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGCAGCTGTAGTGACAGAAAACGGAACAGGAAAGTCAGGGGAAACGAAGAGGCGGCCCAAAGTAGGAAAAGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGGCGCATAGAGACTGTGGCTCGCATKCCACCGCCCCGGAATCCCAGAGAGGTGCGTGAATTCCTGGGAACTGCTGGGTCC.........................................................................................................................

.................................ATACCTCAAAACCTTTCACCCTCTTCTTAGATGAGAGGCAAGGAATTGCAAAAGGAGTCTTAACCCAGAAATTGGGGCCCTGGAAGAGACTGGTAGCATATCTGTCTAAAAAGCTAGATCCTGTAGCAGCTGGTTG.................................................................TTGGGCAGCCATTGACTGTTATTACTCCACATGCTCTAGAGGCCATAGTGCGACAGCCCCCGGACCGGTGGATTACCAACGCGCGCTTGACCCACTACCAGGCCCTCCTATTGGACACAGACCGCGTCCGGTTTGGCCCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

.....................................................................................................................................................................................................................................................................................................CCCGTGGCAGCCGCCCGGGGGCTTATTGGGAGGTAGACTTCACTGAAGTAAAACCTCACTATGCTGGGTATAAGTACTTACTACTGTTTGTAGATACCCTTTCAGGATGGGTAGAAGCCTAACCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

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Q776_gp1

MGQTLTTPLSLTLTHFSDVRARAHNLSVGVRKGRWQTFCSSEWPTLHVGWPRDGTFDLSVILQVKTKVMDPGPHGHPDQVAYIITWEDLVRNPPPWVKPFLHTPSTSKSTLLALEVPKNRTLDPPKPVLPDESQQDLLFQDPLPHPPHNPLLEPPPYNSPSPPVLSPVSPTTPSAPTPSSLVSSSTPPSSPAPPELTPRTPPQTPRLRLRRAEGQDGPSTWQSSLFPLRTVNRTIQYWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQVLLTTEERQRVLLEARKNVPGPGGLPTQLPNEIDEGFPLTRPDWDYETAPGRESLRIYRQALLAGLKGAGKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEAPEHKATVAMSFIDQAALDIKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARLIKEQEEREDRRDRKRDKHLTKILAAVVTEKRAGKSGETRRRPKVDKDQCAYCKERGHWIKDCPKRPRDQKKPAPVLTLGEDSE*GCQGSGAPPEPRLTLSVGGHPTTFLVDTGAQHSVLTKANGPLSSRTSWVQGATGRKMHKWTNRRTVNLGQGMVTHSFLVVPECPYPLLGRDLLTKLGAQIHFSEAGAQVLDRDGQPIQILTVSLQDEHRLFDIPVTTSLPDVWLQDFPQAWAETGGLGRAKCQAPIIIDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRPCRSPWNTPLLPVKKPGTQDYRPVQDLREINKRTVDIHPTVPNPYNLLSTLKPDYSWYTVLDLKDAFFCLPLAPQSQELFAFEWKDPERGISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYVDDLLLAAPTKKACTQGTRHLLQELGEKGYRASAKKAQICQTKVTYLGYILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTEHQLAF

............................GVRKGKFQTYCMSEWPNXXVXWPQXGTFXLXIILXVKXXX.X.....................................................................................................................................................................................................................................................................................................................................................................................................................ILAAVVTENGTGKSGETKRRPKVGKDX...................................................................................................................................................................................................................................................................................................................................................................................................................................................PGRIETVARXPPPRNPREVREFLGTAGS...................................

EALKKALLSAPALGLPDTSKPFTLFLDERQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPHTLEAIVRQPPDRWITNARLTHYQALLLDTDRVQFGPPVTLNPATLLPVPENQPSPHDCRQVLAETHGTREDLKDQELPDADHTWYTDGSSYLDSGTRRAGAAVVDGHNTIWAQSLPPGTSAQKAELIALTKALELSKGKKANIYTDSRYAFATAHTHGSIYERRGLLTSEGKEIKNKAEIIALLKALFLPQEVAIIHCPGHQKGQDPVAVGNRQADRVARQAAMAEVLTLATEPDNTSHITIEHTYTSEDQEEARAIGATENKDTRNWEKEGKIVLPQKEALAMIQQMHAWTHLGNRKLKLLIEKTDFLIPRASTLIEQVTSACKVCQQVNAGATRVPAGKRTRGNRPGVYWEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNTPNRFGLTPYEILYGGPPPLSTLLNSFSPSNSKTDLQARLKGLQAVQAQIWAPLAELYRPGHSQTSHPFQVGDSVYVRRHRSQGLEPRWKGPYIVLLTTPTAIKVDGIATWIHASHAKAAPGTPGPTSSGTWRLRRSEDPLKIRLSRT*

................XTSKPFTLFLDERQGIAKGVLTQKLGPWKRLVAYLSKKLDPVAAGX.....................XGQPLTVITPHALEAIVRQPPDRWITNARLTHYQALLLDTDRVRFGPX.................................................................................................................................................................................................................................................................................................................XRGSRPGAYWEVDFTEVKPHYAGYKYLLLFVDTLSGWVEA*PX.........................................................................................................................................................................................................................................................

env

MGFTTKIIFLYNLVLVYAGFDDPRKAIELVQKRYGRPCDCSGGQVSEPPSDRVSQVTCSGKTAYLMPDQRWKCKSIPKDTSPSGPLQECPCNSYQSSVHSSCYTSYQQCRSGNKTYYTATLLKTQTGGTSDVQVLGSTNKLIQSPCNGIKGQSICWSTTAPIHVSDGGGPLDTTRIKSVQRKLEEIHKALYPELQYHPLAIPKVRDNLMVDAQTLNILNATYNLLLMSNTSLVDDCWLCLKLGPPTPLAIPNFLLSYVTRSSDNISCLIIPPLLVQPMQFSNSSCLFSPSYNSTEEIDLGHVAFSNCTSITNVTGPICAVNGSVFLCGNNMAYTYLPTNWTGLCVLATLLPDIDIIPGDEPVPIPAIDHFIYRPKRAIQFIPLLAGLGITAAFTTGATGLGVSVTQYTKLSNQLISDVQILSSTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGICLALQEKCCFYVNKSGIVRDKIKTLQEELERRRKDLASNPLWTGLQGLLPYLLPFLGPLLTLLLLLTIGPCIFNRLTAFINDKLNIIHAMVLTQQYQVLRTDEEAQD*


	Begin	End	Coverage	Score	Concordance	Matches	Identities	I/D/M/F^*	Stop Codons
NT	1069	5420	8.0%	996	72.9%	683 (100%)	581 (85.1%)	0/0
Mutations:	1083A>G 1084C>A 1085G>A 1088G>T 1089G>T 1092A>G 1097T>A 1102T>A 1103C>T 1107C>A 1110G>A 1116C>A 1118C>A 1120C>Y 1122T>Y 1123C>S 1125T>Y 1128C>R 1130G>R 1131G>R 1139G>A 1140G>A 1143C>M 1149T>W 1152T>Y 1153G>S 1158C>M 1159T>Y 1161C>Y 1162G>A 1167T>Y 1170G>R 1171C>Y 1176T>Y 1179G>A 1180A>G 1185G>A 1188A>G 1192G>A 2421C>T 2430T>A 2436A>C 2437A>G 2439G>A 2440G>A 2460A>G 2462G>A 2463A>G 2472T>C 2480A>G 2481T>A 2484G>A 3825T>K 3878T>C 4035C>T 4044G>A 4047C>T 4050T>C 4060C>T 4062G>A 4065C>T 4068A>G 4077G>A 4083C>A 4093C>T 4095G>A 4101A>G 4113T>C 4119A>G 4124C>T 4134C>T 4140C>T 4143G>A 4149G>A 4152C>T 4158G>A 4161G>A 4164C>T 4167C>T 4246C>T 4267A>G 4287G>A 4308A>T 4317A>G 4321C>T 4323A>G 4342T>C 4345C>T 4353G>A 4364A>G 5295T>C 5301T>C 5303A>G 5313A>G 5315T>C 5316C>T 5325A>G 5326A>G 5377G>C 5392T>C 5414T>A 5415T>A
CDS

Q776_gp1	29	1479	13.3%	1193	69.9%	229 (100%)	192 (83.8%)	0/0/10/0	1
Protein mutations:	R34K (1084C>A 1085G>A) W35F (1088G>T 1089G>T) F38Y (1097T>A) S40M (1102T>A 1103C>T) T45N (1118C>A) R52Q (1139G>A 1140G>A) V60I (1162G>A) K484N (2436A>C) R485G (2437A>G 2439G>A) A486T (2440G>A) R493K (2462G>A 2463A>G) D499G (2480A>G 2481T>A) F965S (3878T>C) P1047L (4124C>T) T1095A (4267A>G) Q1127R (4364A>G) N1440S (5303A>G) V1444A (5315T>C 5316C>T) I1448V (5326A>G) V1465L (5377G>C) F1470L (5392T>C) F1477* (5414T>A 5415T>A)
Codon mutations:	GGA33GGG (1083A>G) CGA34AAA (1084C>A 1085G>A) TGG35TTT (1088G>T 1089G>T) CAA36CAG (1092A>G) TTC38TAC (1097T>A) TCG40ATG (1102T>A 1103C>T) TCC41TCA (1107C>A) GAG42GAA (1110G>A) CCC44CCA (1116C>A) ACC45AAC (1118C>A) CTT46YTY (1120C>Y 1122T>Y) CAT47SAY (1123C>S 1125T>Y) GTC48GTR (1128C>R) GGG49GRR (1130G>R 1131G>R) CGG52CAA (1139G>A 1140G>A) GAC53GAM (1143C>M) ACT55ACW (1149T>W) TTT56TTY (1152T>Y) GAC57SAC (1153G>S) CTC58CTM (1158C>M) TCC59YCY (1159T>Y 1161C>Y) GTT60ATT (1162G>A) ATT61ATY (1167T>Y) TTG62TTR (1170G>R) CAG63YAG (1171C>Y) GTT64GTY (1176T>Y) AAG65AAA (1179G>A) ACA66G.. (1180A>G) AAG67..A (1185G>A) GTA68..G (1188A>G) GAT70A.. (1192G>A) GCC479GCT (2421C>T) ACT482ACA (2430T>A) AAA484AAC (2436A>C) AGG485GGA (2437A>G 2439G>A) GCA486ACA (2440G>A) ACA492ACG (2460A>G) AGA493AAG (2462G>A 2463A>G) CCT496CCC (2472T>C) GAT499GGA (2480A>G 2481T>A) AAG500AAA (2484G>A) ATT947ATK (3825T>K) TTC965TCC (3878T>C) GAC1017.AT (4035C>T) AAG1020AAA (4044G>A) CCC1021CCT (4047C>T) TTT1022TTC (4050T>C) CTG1026TTA (4060C>T 4062G>A) GAC1027GAT (4065C>T) GAA1028GAG (4068A>G) GGG1031GGA (4077G>A) GCC1033GCA (4083C>A) CTG1037TTA (4093C>T 4095G>A) CAA1039CAG (4101A>G) CCT1043CCC (4113T>C) AAA1045AAG (4119A>G) CCG1047CTG (4124C>T) TAC1050TAT (4134C>T) TCC1052TCT (4140C>T) AAG1053AAA (4143G>A) CTG1055CTA (4149G>A) GAC1056GAT (4152C>T) GTG1058GTA (4158G>A) GCG1059GCA (4161G>A) GCC1060GCT (4164C>T) GGC1061GGT (4167C>T) CTG1088TTG (4246C>T) ACT1095GCT (4267A>G) CGG1101CGA (4287G>A) ATA1108ATT (4308A>T) GCA1111GCG (4317A>G) CTA1113TTG (4321C>T 4323A>G) TTA1120CTA (4342T>C) CTG1121TTG (4345C>T) ACG1123ACA (4353G>A) CAG1127CGG (4364A>G) ACT1437.CC (5295T>C) GGT1439GGC (5301T>C) AAC1440AGC (5303A>G) GGA1443GGG (5313A>G) GTC1444GCT (5315T>C 5316C>T) GAA1447GAG (5325A>G) ATA1448GTA (5326A>G) GTG1465CTG (5377G>C) TTT1470CTT (5392T>C) TTT1477TAA (5414T>A 5415T>A)
gag	29	502	12.5%	135	27.6%	67 (100%)	44 (65.7%)	0/0/9/0	0
Protein mutations:	R34K (1084C>A 1085G>A) W35F (1088G>T 1089G>T) F38Y (1097T>A) S40M (1102T>A 1103C>T) T45N (1118C>A) R52Q (1139G>A 1140G>A) V60I (1162G>A) K484N (2436A>C) R485G (2437A>G 2439G>A) A486T (2440G>A) R493K (2462G>A 2463A>G) D499G (2480A>G 2481T>A)
Codon mutations:	GGA33GGG (1083A>G) CGA34AAA (1084C>A 1085G>A) TGG35TTT (1088G>T 1089G>T) CAA36CAG (1092A>G) TTC38TAC (1097T>A) TCG40ATG (1102T>A 1103C>T) TCC41TCA (1107C>A) GAG42GAA (1110G>A) CCC44CCA (1116C>A) ACC45AAC (1118C>A) CTT46YTY (1120C>Y 1122T>Y) CAT47SAY (1123C>S 1125T>Y) GTC48GTR (1128C>R) GGG49GRR (1130G>R 1131G>R) CGG52CAA (1139G>A 1140G>A) GAC53GAM (1143C>M) ACT55ACW (1149T>W) TTT56TTY (1152T>Y) GAC57SAC (1153G>S) CTC58CTM (1158C>M) TCC59YCY (1159T>Y 1161C>Y) GTT60ATT (1162G>A) ATT61ATY (1167T>Y) TTG62TTR (1170G>R) CAG63YAG (1171C>Y) GTT64GTY (1176T>Y) AAG65AAA (1179G>A) ACA66G.. (1180A>G) AAG67..A (1185G>A) GTA68..G (1188A>G) GAT70A.. (1192G>A) GCC479GCT (2421C>T) ACT482ACA (2430T>A) AAA484AAC (2436A>C) AGG485GGA (2437A>G 2439G>A) GCA486ACA (2440G>A) ACA492ACG (2460A>G) AGA493AAG (2462G>A 2463A>G) CCT496CCC (2472T>C) GAT499GGA (2480A>G 2481T>A) AAG500AAA (2484G>A)
Proteins

gag-pol precursor polyprotein (YP_009109689.1)	29	1479	13.3%	1193	69.9%	229 (100%)	192 (83.8%)	0/0/10/0	1
Protein mutations:	R34K (1084C>A 1085G>A) W35F (1088G>T 1089G>T) F38Y (1097T>A) S40M (1102T>A 1103C>T) T45N (1118C>A) R52Q (1139G>A 1140G>A) V60I (1162G>A) K484N (2436A>C) R485G (2437A>G 2439G>A) A486T (2440G>A) R493K (2462G>A 2463A>G) D499G (2480A>G 2481T>A) F965S (3878T>C) P1047L (4124C>T) T1095A (4267A>G) Q1127R (4364A>G) N1440S (5303A>G) V1444A (5315T>C 5316C>T) I1448V (5326A>G) V1465L (5377G>C) F1470L (5392T>C) F1477* (5414T>A 5415T>A)
Codon mutations:	GGA33GGG (1083A>G) CGA34AAA (1084C>A 1085G>A) TGG35TTT (1088G>T 1089G>T) CAA36CAG (1092A>G) TTC38TAC (1097T>A) TCG40ATG (1102T>A 1103C>T) TCC41TCA (1107C>A) GAG42GAA (1110G>A) CCC44CCA (1116C>A) ACC45AAC (1118C>A) CTT46YTY (1120C>Y 1122T>Y) CAT47SAY (1123C>S 1125T>Y) GTC48GTR (1128C>R) GGG49GRR (1130G>R 1131G>R) CGG52CAA (1139G>A 1140G>A) GAC53GAM (1143C>M) ACT55ACW (1149T>W) TTT56TTY (1152T>Y) GAC57SAC (1153G>S) CTC58CTM (1158C>M) TCC59YCY (1159T>Y 1161C>Y) GTT60ATT (1162G>A) ATT61ATY (1167T>Y) TTG62TTR (1170G>R) CAG63YAG (1171C>Y) GTT64GTY (1176T>Y) AAG65AAA (1179G>A) ACA66G.. (1180A>G) AAG67..A (1185G>A) GTA68..G (1188A>G) GAT70A.. (1192G>A) GCC479GCT (2421C>T) ACT482ACA (2430T>A) AAA484AAC (2436A>C) AGG485GGA (2437A>G 2439G>A) GCA486ACA (2440G>A) ACA492ACG (2460A>G) AGA493AAG (2462G>A 2463A>G) CCT496CCC (2472T>C) GAT499GGA (2480A>G 2481T>A) AAG500AAA (2484G>A) ATT947ATK (3825T>K) TTC965TCC (3878T>C) GAC1017.AT (4035C>T) AAG1020AAA (4044G>A) CCC1021CCT (4047C>T) TTT1022TTC (4050T>C) CTG1026TTA (4060C>T 4062G>A) GAC1027GAT (4065C>T) GAA1028GAG (4068A>G) GGG1031GGA (4077G>A) GCC1033GCA (4083C>A) CTG1037TTA (4093C>T 4095G>A) CAA1039CAG (4101A>G) CCT1043CCC (4113T>C) AAA1045AAG (4119A>G) CCG1047CTG (4124C>T) TAC1050TAT (4134C>T) TCC1052TCT (4140C>T) AAG1053AAA (4143G>A) CTG1055CTA (4149G>A) GAC1056GAT (4152C>T) GTG1058GTA (4158G>A) GCG1059GCA (4161G>A) GCC1060GCT (4164C>T) GGC1061GGT (4167C>T) CTG1088TTG (4246C>T) ACT1095GCT (4267A>G) CGG1101CGA (4287G>A) ATA1108ATT (4308A>T) GCA1111GCG (4317A>G) CTA1113TTG (4321C>T 4323A>G) TTA1120CTA (4342T>C) CTG1121TTG (4345C>T) ACG1123ACA (4353G>A) CAG1127CGG (4364A>G) ACT1437.CC (5295T>C) GGT1439GGC (5301T>C) AAC1440AGC (5303A>G) GGA1443GGG (5313A>G) GTC1444GCT (5315T>C 5316C>T) GAA1447GAG (5325A>G) ATA1448GTA (5326A>G) GTG1465CTG (5377G>C) TTT1470CTT (5392T>C) TTT1477TAA (5414T>A 5415T>A)
polyprotein (YP_009109692.1)	408	949	13.5%	1058	86.9%	162 (100%)	148 (91.4%)	0/0/1/0	1
Protein mutations:	F435S (3878T>C) P517L (4124C>T) T565A (4267A>G) Q597R (4364A>G) N910S (5303A>G) V914A (5315T>C 5316C>T) I918V (5326A>G) V935L (5377G>C) F940L (5392T>C) F947* (5414T>A 5415T>A)
Codon mutations:	ATT417ATK (3825T>K) TTC435TCC (3878T>C) GAC487.AT (4035C>T) AAG490AAA (4044G>A) CCC491CCT (4047C>T) TTT492TTC (4050T>C) CTG496TTA (4060C>T 4062G>A) GAC497GAT (4065C>T) GAA498GAG (4068A>G) GGG501GGA (4077G>A) GCC503GCA (4083C>A) CTG507TTA (4093C>T 4095G>A) CAA509CAG (4101A>G) CCT513CCC (4113T>C) AAA515AAG (4119A>G) CCG517CTG (4124C>T) TAC520TAT (4134C>T) TCC522TCT (4140C>T) AAG523AAA (4143G>A) CTG525CTA (4149G>A) GAC526GAT (4152C>T) GTG528GTA (4158G>A) GCG529GCA (4161G>A) GCC530GCT (4164C>T) GGC531GGT (4167C>T) CTG558TTG (4246C>T) ACT565GCT (4267A>G) CGG571CGA (4287G>A) ATA578ATT (4308A>T) GCA581GCG (4317A>G) CTA583TTG (4321C>T 4323A>G) TTA590CTA (4342T>C) CTG591TTG (4345C>T) ACG593ACA (4353G>A) CAG597CGG (4364A>G) ACT907.CC (5295T>C) GGT909GGC (5301T>C) AAC910AGC (5303A>G) GGA913GGG (5313A>G) GTC914GCT (5315T>C 5316C>T) GAA917GAG (5325A>G) ATA918GTA (5326A>G) GTG935CTG (5377G>C) TTT940CTT (5392T>C) TTT947TAA (5414T>A 5415T>A)
reverse transcriptase (YP_009109694.1)	280	473	17.7%	777	87.9%	120 (100%)	113 (94.2%)	0/0/1/0	0
Protein mutations:	F307S (3878T>C) P389L (4124C>T) T437A (4267A>G) Q469R (4364A>G)
Codon mutations:	ATT289ATK (3825T>K) TTC307TCC (3878T>C) GAC359.AT (4035C>T) AAG362AAA (4044G>A) CCC363CCT (4047C>T) TTT364TTC (4050T>C) CTG368TTA (4060C>T 4062G>A) GAC369GAT (4065C>T) GAA370GAG (4068A>G) GGG373GGA (4077G>A) GCC375GCA (4083C>A) CTG379TTA (4093C>T 4095G>A) CAA381CAG (4101A>G) CCT385CCC (4113T>C) AAA387AAG (4119A>G) CCG389CTG (4124C>T) TAC392TAT (4134C>T) TCC394TCT (4140C>T) AAG395AAA (4143G>A) CTG397CTA (4149G>A) GAC398GAT (4152C>T) GTG400GTA (4158G>A) GCG401GCA (4161G>A) GCC402GCT (4164C>T) GGC403GGT (4167C>T) CTG430TTG (4246C>T) ACT437GCT (4267A>G) CGG443CGA (4287G>A) ATA450ATT (4308A>T) GCA453GCG (4317A>G) CTA455TTG (4321C>T 4323A>G) TTA462CTA (4342T>C) CTG463TTG (4345C>T) ACG465ACA (4353G>A) CAG469CGG (4364A>G)
endonuclease (YP_009109695.1)	103	144	10.7%	281	84.1%	42 (100%)	35 (83.3%)	0/0/0/0	1
Protein mutations:	N105S (5303A>G) V109A (5315T>C 5316C>T) I113V (5326A>G) V130L (5377G>C) F135L (5392T>C) F142* (5414T>A 5415T>A)
Codon mutations:	ACT102.CC (5295T>C) GGT104GGC (5301T>C) AAC105AGC (5303A>G) GGA108GGG (5313A>G) GTC109GCT (5315T>C 5316C>T) GAA112GAG (5325A>G) ATA113GTA (5326A>G) GTG130CTG (5377G>C) TTT135CTT (5392T>C) TTT142TAA (5414T>A 5415T>A)
polyprotein (YP_009109690.1)	29	502	12.5%	135	27.6%	67 (100%)	44 (65.7%)	0/0/9/0	0
Protein mutations:	R34K (1084C>A 1085G>A) W35F (1088G>T 1089G>T) F38Y (1097T>A) S40M (1102T>A 1103C>T) T45N (1118C>A) R52Q (1139G>A 1140G>A) V60I (1162G>A) K484N (2436A>C) R485G (2437A>G 2439G>A) A486T (2440G>A) R493K (2462G>A 2463A>G) D499G (2480A>G 2481T>A)
Codon mutations:	GGA33GGG (1083A>G) CGA34AAA (1084C>A 1085G>A) TGG35TTT (1088G>T 1089G>T) CAA36CAG (1092A>G) TTC38TAC (1097T>A) TCG40ATG (1102T>A 1103C>T) TCC41TCA (1107C>A) GAG42GAA (1110G>A) CCC44CCA (1116C>A) ACC45AAC (1118C>A) CTT46YTY (1120C>Y 1122T>Y) CAT47SAY (1123C>S 1125T>Y) GTC48GTR (1128C>R) GGG49GRR (1130G>R 1131G>R) CGG52CAA (1139G>A 1140G>A) GAC53GAM (1143C>M) ACT55ACW (1149T>W) TTT56TTY (1152T>Y) GAC57SAC (1153G>S) CTC58CTM (1158C>M) TCC59YCY (1159T>Y 1161C>Y) GTT60ATT (1162G>A) ATT61ATY (1167T>Y) TTG62TTR (1170G>R) CAG63YAG (1171C>Y) GTT64GTY (1176T>Y) AAG65AAA (1179G>A) ACA66G.. (1180A>G) AAG67..A (1185G>A) GTA68..G (1188A>G) GAT70A.. (1192G>A) GCC479GCT (2421C>T) ACT482ACA (2430T>A) AAA484AAC (2436A>C) AGG485GGA (2437A>G 2439G>A) GCA486ACA (2440G>A) ACA492ACG (2460A>G) AGA493AAG (2462G>A 2463A>G) CCT496CCC (2472T>C) GAT499GGA (2480A>G 2481T>A) AAG500AAA (2484G>A)
p12 protein (YP_009109696.1)	29	68	35.7%	13	4.0%	40 (100%)	23 (57.5%)	0/0/9/0	0
Protein mutations:	R34K (1084C>A 1085G>A) W35F (1088G>T 1089G>T) F38Y (1097T>A) S40M (1102T>A 1103C>T) T45N (1118C>A) R52Q (1139G>A 1140G>A) V60I (1162G>A)
Codon mutations:	GGA33GGG (1083A>G) CGA34AAA (1084C>A 1085G>A) TGG35TTT (1088G>T 1089G>T) CAA36CAG (1092A>G) TTC38TAC (1097T>A) TCG40ATG (1102T>A 1103C>T) TCC41TCA (1107C>A) GAG42GAA (1110G>A) CCC44CCA (1116C>A) ACC45AAC (1118C>A) CTT46YTY (1120C>Y 1122T>Y) CAT47SAY (1123C>S 1125T>Y) GTC48GTR (1128C>R) GGG49GRR (1130G>R 1131G>R) CGG52CAA (1139G>A 1140G>A) GAC53GAM (1143C>M) ACT55ACW (1149T>W) TTT56TTY (1152T>Y) GAC57SAC (1153G>S) CTC58CTM (1158C>M) TCC59YCY (1159T>Y 1161C>Y) GTT60ATT (1162G>A) ATT61ATY (1167T>Y) TTG62TTR (1170G>R) CAG63YAG (1171C>Y) GTT64GTY (1176T>Y) AAG65AAA (1179G>A) ACA66G.. (1180A>G) AAG67..A (1185G>A) GTA68..G (1188A>G) GAT70A.. (1192G>A)
p30 protein (YP_009109698.1)	250	251	0.8%	10	100%	2 (100%)	2 (100%)	0/0/0/0	0
Protein mutations:	none
Codon mutations:	none
p10 protein (YP_009109699.1)	1	25	47.2%	112	72.7%	25 (100%)	19 (76.0%)	0/0/0/0	0
Protein mutations:	K7N (2436A>C) R8G (2437A>G 2439G>A) A9T (2440G>A) R16K (2462G>A 2463A>G) D22G (2480A>G 2481T>A)
Codon mutations:	GCC2GCT (2421C>T) ACT5ACA (2430T>A) AAA7AAC (2436A>C) AGG8GGA (2437A>G 2439G>A) GCA9ACA (2440G>A) ACA15ACG (2460A>G) AGA16AAG (2462G>A 2463A>G) CCT19CCC (2472T>C) GAT22GGA (2480A>G 2481T>A) AAG23AAA (2484G>A)

Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Baboon endogenous virus strain M7

Assembly

Coverage Map

Variant Tables

Assignment

Alignment

Genome Region

Alignment Detailed Statistics

Analysis details