NGS Details (SRR3458562_Metagenome_example): Kwaitsingvirus HK544

Assembly

193 (2 contig(s))
2.8
7
0.45 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Kwaitsingvirus HK544 (Taxonomy ID: 2169923)
98.4456
95.4545
1
63

Alignment

374.0 (NT) + 399.0 (AA) = 773.0
97.4779
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT23309244030.5%37496.9%193 (100%)190 (98.4%)0/0
Mutations:24299T>C, 24304T>C, 24307G>C
CDS
11911.8%11990.8%19 (100%)18 (94.7%)0/0/0/00
455520.0%7188.8%11 (100%)11 (100%)0/0/0/01
14718217.8%20990.5%36 (100%)34 (94.4%)0/0/0/00
Protein mutations:E181G (24299T>C)
Codon mutations:GGC178GGG (24307G>C), ACA179ACG (24304T>C), GAG181GGG (24299T>C)
Proteins
11911.8%11990.8%19 (100%)18 (94.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
455520.0%7188.8%11 (100%)11 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
14718217.8%20990.5%36 (100%)34 (94.4%)0/0/0/00
Protein mutations:E181G (24299T>C)
Codon mutations:GGC178GGG (24307G>C), ACA179ACG (24304T>C), GAG181GGG (24299T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43