NGS Details (SRR3458562_Metagenome_example): Wanchaivirus mEp234

Assembly

139 (1 contig(s))
4.6
6
0.39 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Wanchaivirus mEp234 (Taxonomy ID: 2169926)
97.8417
97.8723
0
61

Alignment

266.0 (NT) + 315.0 (AA) = 581.0
97.9764
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT36404365420.4%26695.7%139 (100%)136 (97.8%)0/0
Mutations:36412G>T, 36520C>A, 36538A>C
CDS
196529.6%31597.2%47 (100%)46 (97.9%)0/0/0/00
Proteins
196529.6%31597.2%47 (100%)46 (97.9%)0/0/0/00
Protein mutations:none
Codon mutations:ACG21ACT (36412G>T), CCC57CCA (36520C>A), GCA63GCC (36538A>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43