Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Stx2-converting phage 1717

Assembly

2450 (5 contig(s))
13.7
347
22.39 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Stx2-converting phage 1717 (Taxonomy ID: 563769)
98.0816
98.994
2
77

Alignment

4712.0 (NT) + 3316.0 (AA) = 8028.0
97.593
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT2621463.9%471296.2%2450 (100%)2403 (98.1%)0/0
Mutations:
103T>C 274G>A 379G>A 457T>C 484A>T 594C>T 598G>A 646G>T 670G>C 672G>A 673G>A 681G>A 13278T>C 13389A>T 13410G>A 13416T>C 13484T>G 13541G>T 13601T>C 13604C>G 13634T>C 13709T>C 13853G>A 13859T>C 13919T>C 13967A>C 13994G>A 14000C>T 14003T>C 14024A>G 14039T>A 14045C>T 14961A>G 14984C>A 49826A>T 49832A>C 49852G>A 49853C>A 49868C>T 61673T>A 61799G>A 61922T>C 61925C>G 62060A>T 62063A>G 62127C>T 62142A>G
CDS
20727424.8%48498.4%68 (100%)68 (100%)0/0/0/01
120644.9%131199.7%206 (100%)205 (99.5%)0/0/0/00
15843.3%39199.0%58 (100%)57 (98.3%)0/0/0/00
Protein mutations:
T13N (14984C>A)
Codon mutations:
GTA5GTG (14961A>G) ACT13AAT (14984C>A)
19924013.6%26292.3%42 (100%)39 (92.9%)0/0/0/00
Protein mutations:
L202F (49832A>C) S209K (49852G>A 49853C>A)
Codon mutations:
GGA200GGT (49826A>T) TTA202TTC (49832A>C) AGC209AAA (49852G>A 49853C>A) TCC214TCT (49868C>T)
26939131.5%86899.1%123 (100%)123 (100%)0/0/0/01
Proteins
20727424.8%48498.4%68 (100%)68 (100%)0/0/0/01
Protein mutations:none
Codon mutations:
ATT211ATC (13278T>C) GCA248GCT (13389A>T) AGG255AGA (13410G>A) GAT257GAC (13416T>C)
120644.9%131199.7%206 (100%)205 (99.5%)0/0/0/00
Protein mutations:none
Codon mutations:
GCT7GCG (13484T>G) CTG26CTT (13541G>T) ATT46ATC (13601T>C) CGC47CGG (13604C>G) GAT57GAC (13634T>C) AGT82AGC (13709T>C) AAG130AAA (13853G>A) CTT132CTC (13859T>C) ACT152ACC (13919T>C) TCA168TCC (13967A>C) GAG177GAA (13994G>A) GAC179GAT (14000C>T) GCT180GCC (14003T>C) GCA187GCG (14024A>G) ATT192ATA (14039T>A) GCC194GCT (14045C>T)
15843.3%39199.0%58 (100%)57 (98.3%)0/0/0/00
Protein mutations:
T13N (14984C>A)
Codon mutations:
GTA5GTG (14961A>G) ACT13AAT (14984C>A)
19924013.6%26292.3%42 (100%)39 (92.9%)0/0/0/00
Protein mutations:
L202F (49832A>C) S209K (49852G>A 49853C>A)
Codon mutations:
GGA200GGT (49826A>T) TTA202TTC (49832A>C) AGC209AAA (49852G>A 49853C>A) TCC214TCT (49868C>T)
26939131.5%86899.1%123 (100%)123 (100%)0/0/0/01
Protein mutations:none
Codon mutations:
GGT297GGA (61673T>A) GAG339GAA (61799G>A) TCT380TCC (61922T>C) CGC381CGG (61925C>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43