Version 2.14.5 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Lowelvirus tuscon4d
Assembly
86 (1 contig(s))
1.0
1
0.06 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
116.0 (NT) + 193.0 (AA) = 309.0
84.1962
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 160251 | 160336 | 0.1% | 116 | 67.4% | 86 (100%) | 72 (83.7%) | 0/0 | |
| Mutations: | 160253G>A, 160257A>C, 160259A>C, 160265A>G, 160286C>T, 160298G>A, 160301C>T, 160304C>T, 160307A>C, 160310G>A, 160313T>C, 160319A>T, 160320C>A, 160325T>C | ||||||||