Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Pankowvirus WGPS8

Assembly

85 (1 contig(s))
1.0
1
0.06 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Pankowvirus WGPS8 (Taxonomy ID: 2844236)
94.1176
89.6552
0
78

Alignment

150.0 (NT) + 171.0 (AA) = 321.0
92.5072
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT44329444130.2%15088.2%85 (100%)80 (94.1%)0/0
Mutations:
44337A>T 44343A>C 44363G>A 44364C>A 44379C>T
CDS
2252538.7%17191.4%29 (100%)26 (89.7%)0/0/0/00
Protein mutations:
L229F (44343A>C) S236K (44363G>A 44364C>A)
Codon mutations:
GGA227GGT (44337A>T) TTA229TTC (44343A>C) AGC236AAA (44363G>A 44364C>A) TCC241TCT (44379C>T)
Proteins
2252538.7%17191.4%29 (100%)26 (89.7%)0/0/0/00
Protein mutations:
L229F (44343A>C) S236K (44363G>A 44364C>A)
Codon mutations:
GGA227GGT (44337A>T) TTA229TTC (44343A>C) AGC236AAA (44363G>A 44364C>A) TCC241TCT (44379C>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43