Genome Detective

NGS Details (SRR3458562_Metagenome_example): Hubei picorna-like virus 22

Assembly

Coverage Length

136 (1 contig(s))

Depth Of Coverage

1.0

Number Of Reads

Reads Per Million

0.06 rpm (after QC)

Ambiguities

Assembly Method

de novo + reference guided assembly

Consensus Caller

Bcf Tools

Coverage Map

Map

Variant Tables

Consensus Variants

Download consensus variants (vcf)

Minority Variants

Download minority variants (vcf)

SNP Variants Table

Download SNP mutations table (csv)

Annotated Variants Table

Download annotated variants table (csv)

Assignment

Type

Hubei picorna-like virus 22 (Taxonomy ID: 1923102)

Reference Genome

NC_033227.1

NT Identity (%)

77.9412

AA Identity (%)

84.4444

Number Of Stop Codons

Number Of CDS

Alignment

Alignment Score

152.0 (NT) + 318.0 (AA) = 470.0

Concordance (%)

76.6721

Alignment Method

Global, seeded, nucleotide + amino acids (AGA)

NT Alignment

Download alignment (FASTA)

Region Bam File

Download BAM zip file

CDS Alignment

Download CDS alignment (FASTA)

Consensus Sequence

Download consensus sequence (FASTA) (Including IUPAC ambiguity codes)

Consensus Contigs

Download consensus contigs (FASTA)

Genome Region

Sequence starts at position 4763 and ends at position 4898 relative to NC_033227.1 reference sequence.

NC_033227.1

SRR3458562_Metagenome_example-NC_033227.1-84-0

NC_033227.1

SRR3458562_Metagenome_example-NC_033227.1-84-0

CCCCAAAACCCCCCCCTTAAACTCAACACTGTAGTGGATTCATTTTCCGTTGCAAAACAAAACATTACTACCCGCATTTATGTAGGCTCTGTGTTTTCTATGCGACCGTTACATTAATCTCTACTCTGACCCACTAGTTTATAAAACCGAAGACCTGAATGAAACGATTTTCCTTCTTTTCAACCTCTAACGAACCTCTGACGGCTTGAGAAACCTGAAGTTAGTAATTATGTTTAAAAGAAAGGAAAGTCAAACGCGATGACTCTTACATCCCTATTCCATACCGTTGCTCCACAATGTGAGCGATGCGAGGTCGGGACTGCAGTATTAGGGGAACGAGCTACATGGAGAGTTAATTATCTCTCCCCTCCTACGGGAGTCTCATGTGAGCTGTAGAAAGCGGTTGGCACCTCTCGTTACCTCGCCTGTACATGATCCATGGCTTATTCAACTTCTCAACCCCAAAACAACAAAACCCCCAAAAACCCCCCCCCTCAAAAACAACAGCGACTTCTTACTGAGGTCCTCCGTTCGCTCGAAGCTACCGGAGAACTGGTTACTGAAGGTTGTTGCTCTCTTCATTGTGAGCGACCCTACTTTATCTACTCTCATGGTAGTCGAACGGTTGTCAAGAGTGCCGGAGGCGTAGAGGAGTGTGTCTTTGACGACATGCCTACTCGCGTTTTCTACCACTGTAAGACACATTTCGAGCACCGAGATGTTATGACGGCAATCCGAGCATTTGGCCACGCAGAAGTGGCTGAACTTTTGAACTTGACTGGCAAACCATCTTACACACGAAAATTGCGCACTTGCCCAAAGGGATGTTCTTCCTGTGGGCAATTGGATTGCAAATGCGCCACACCTATGTGCTACACTGATTCTTCCGACAACGACGAGAGTGAGGATTCATGTAGAGAGAACGAGGTGTGGGGTTATTATACCCTGCGAACCATTTCAAAGTGGCAGCGATTTTTACCCCGAGCAGCAAAAGCACAAT

CAAACTTTCTCCAAGACGCTTTTCACAGCGTCTCTGTGTTCTTTTCAAGCGCTCTCAATTCCCTGAAGGGACTGGGAGAACGTGCGATTAAGGCAGCACTACGTGCTGTCTTTGGATACGCAGTTGACGTTTTGAAAGAATACTTCCCAAGTGTTAATGGTCCCGTGATGCATTTCTACGCTTTGATTGTCGTGACGTTGTGTATGTATGCGATGAAAATTCCTGGAGAAGTCCGTGGAGCTTTGATCACATTGTACTCATACGTTGTTGAACTTTCATTGCCTGTGGAGATTGGCGCACTTGTCATGAACATCTTCATTGGAGGAAGTTGGCGCGACACCCCACATCGCCGCGCCCGAGCTCAATCAGGAGACGATTTACAATCGTTGGTCACGAAGGCAGTTATGGGCCTTGCAGCCTACTGCATGACTCAGGCCGTGCCTGACACTAAAGCAACCAGCGAATTTCTCGTGAAGTGTGATCGAGTTCCAAAGGCAATTCGAGGCATCGGCAATATTGTCGAATACCTTACAACAGTCTGGGACTACATCCAAAAACAAATGGCAAAGCACTTCGGATGGGAGTATAAGATCGACTCCGAGATTCCGATAGACGTCATTAGTAATCATGAGAAAATTGTTTTCCTTGGCCACGCTGATCAACGATCCCAAATTCCCTTTGATGCTACCATCCGCGAACAGGTCAAAGACGCTTACCTCACCTACCATCGTTTGCGCCTTTTGCACCAACCTTCCCGCACGATTCAGACATTTATGGACAAATATGGCGGCATTATTGGCACTTTGATGTCAAAGGTATCAGATTCAACAGCAGGACAAACAGAGAACCGACAGAAGCCCGTCGTCGTCTTTTTGAAAGGCGGCACGGGTGTTGGTAAATCTGAACTCCTGTATTTCATGGGCACTGACGTACTTGTGGATTCAAAGATTCTGACTCCCGAGATGACAGACGATGCCATTAAGAGGAAGATCAATGCCTG

CATGTACCCGCGTTACGTGGAGAATGAGTACTGGGATGCTTATAACGAGCAGCCCATTTGTCTGTACGATGATTTCGGACAAATGACAGATTCGCCGACCAACCCAAATCTGGAATTTATGGAACTCATCCGTTCGGCAAATCGTTTCCCTTACGCTGTGCATATGGCGGACATCTCACAAAAGAACAACACCTTCTTTCGGTCGCAGTACATCTTTGCAACCACCAACCTGGACTCTATCGATCCGCGAAGCGTTGTAGATCCAGCAGCTGTTCGTAGTCGAATTGATTTTGGCTACAACATTTCGGTGAAGAAAGAATTTCAAGTGAATCCCGAAGGAACGCGGGAAGAAGATCACAAGCTGGACAGGACTAAGCTCGTTGCTTCTGACGGTCCAACTTTGGCTATCTATGAGATTTGCCGCTGGGACCCTGTCACAGGCAACGTTTGTGCGAACGAAACATTGTCTTTCCCTGAAATGATGGCGGAGATTAAACTGAAGCGGCGAGCGTATGCCCAACATCATGAGAAAAGCTCTGAGACTTTCGTCAGCTACGCGCGACGTCGTATGGCGGTTGCGCAAGGCTGGCCTCAACTTCATCGTTTTCTCCGGTTTTCTCCAGAAGAAATCAGGACTCGTCCTGTGCGGGCGACTTTCTGTTTTCTTCTTAACGAGATCGCACTGGAATGCCGTGAAATGATCACCCGCGCTCAGACTGTAATGCAACAGGTGTGGCAGAAAATCCGTGAAACTGTGACGAAGTATGTCAACGGATGGGCCTTGTTTGGCACTCTGTGTGGCATGCTCACCTATTTCTTCCTAAGAGGATCACCGAAGAAGGGAGAAGATGATTATGACGACGAAACAGCAGCCTTGTTGGCTAAACGACCAAGGTATGAGATTCTGGCATGGATGGACGATGCGGAAAAAGAGTACTTTAGGGAGAAACGACGACTTCCACCTCGAATTTCCCAAGCACTCCAGGACGACAGAATGCCT

ATTCCTCTCTGGAAAGCCAAAGGAGATGAGATTGACCAATTCCAACAGATCTGGACAAATGACGAAGCCATCGAAGAATTGATGGATGAAGGAGAAGCGGCTTACTTGGCAGAAACGGGAATCCTCCCACCATCTGTTCTGGATAAGATCCCCCCAAATCGACACATCCGATCCGAATCTGGCAGAGACTTGCCCCGAATCATTGCTCGCATTGAAGGACGAAAAGCAAAGAGTCAAGCCTTCTCTAGCAAACAAGCACTGGAGGTAGTTAATGTGGCTCGAGCCAATCAGATCTGGCTAGAATACGCTCCAGGCGTGAAGGCTCTGGCGCTTGCAGTTGGAGGACGAAAAGTGCTACTTAACCGACACTACTGGAAACTATTCGGAGACAAGTTCTACTACCAATCGATGACATCGAAATCCCGAATCGAAGTTAAGAAAGAAGAAGTGGAAATTCAGGAAATTCCGCGCAGTAATTACGTTGATGCTATTCTGATCACTCTCCCGCGCCGAGTGCCAATGAGCCGTTCGCTTTGGAGTCATTTCATTCGCAAGAAGGATTTGATCTCTTTGCCTGGCAAATACGCACTCCTTGCATCTCGAGAACTCGACGGATCAACTACTTTGAAGAGCGGAAAGATTCGAAAGTTTGCAACAGAAAAGATCGACATGGATCATGAATCTGGATTTTTGTCGGAAAAGATGACATTCTTTGACTCAGACATAAGGACCATTGACGGAGATTGTGGAGCTTTCGTTGTCTTGGACGATGATCAATTTGCCGGAAAAATTTGCGGATTTCACTTTGCTGGATTTTACGAAGGAGGAGCTCTTTCGGTTCCCCTCGTTTACGAGGATTTCGAAGTGCTCATGTCTGGCAGTCCAACTCTGGTTGTTCCGAAGGAAGTCTTGCCGGAAGAGGGAGAGACTTTTCGGCACGCGACCTTTCAAGGACGCGTTCGTCGAGGAGTTAACAACCCGACTACGACAAGCTTTGTGA

AGACTGACATTTTTGGACTTGTATCACCTAGCGAAATGGCCCCCGCAGTTCTCGCACCACTATCGCGAGAAAATGGACCCGGCAGGAAAGCACTGATGAAAGTTGATCAAGACGTTCCTTACATCGAGCCCTTGAAACTGGAAAAAGCTAAAGAATCTTTTAAGGAAAAACTGTTTTCATTTCCAAACAAGAAACCCTTCGTTCTGACCTTTGAGCAAGCCGTGGCTGGCGAAGACTCATTGCGATTTGCAAAAGGAATCAACCGTGCTCACAGTGCTGGCTATCCCTGGATGTTGGAGAGTACGAAAGGAAAACGAAAGTGGTTTGGAGATGATGAATGGATTCTTGATTCCCCAGAAGCATTGAAAGTGAAGGCAGAAGTTGAGCGGAAAATCGAACTGATGAAGAACAACCAGTACGAACCCTCCCTGTACGTTGACACACTGAAAGACGAGACTCGAGATTTGGAACGAGTTGCCCTTGGAAAGACAAGAGTATTTTCTGCAGCGCCTATGGACTATATCATCCTGATGCGCATGTATTTCCTCTCTTTCTTTTCATTCGTAATGGAACACCGAAACGAGAACGAAATTTCCGTTGGAACTCAGGCTCAGTCTCCTGACTGGGATCTGATGACTAAACGGATATTGTCAAACCATGGTGGCATCATTGCTGGCGACTTCTCCAATTTCGACGGAACTCTTCATTCTGAGATTCTGATGACTGTCTTGGACATAATAAACGAATGGTATGACGACGGCGCAGAAAATCAGCGCATTCGAGAATTTATTTTTGAAGATGTCGTCCATTCGTGGCATTTGACTGAGAAAGAAGTCAACTCTTGGAACCACTCCCAACCATCTGGAAATCCTGGCACGGCAATTTTTAACTCTATGTATAACAGCCTAATTATGCGATTGTGTTACTACGATTTGGAACCCATGAACATGTATGAGCTGGACACCTTCAACAGAAATGTTGTTATGGTGTCATATGGAGA

TGACAACTTGCTGAGCGTGAGTCCTTCTGCCAATTGGTATACACAGCGGACAATAACGGACGCAATGGTGCCATACGGCATGACTTACACCATGGAGACAAAGAGTGGTGAAGTGTGTGACTACCGAACCATCGAAGAAGTTCAATACTTACAGCGCTTTTTCCGCTTCGAACCGAAAATTTCCATGTGGGTTGCCCCCTTGAAGGCGCGAAGCATTAACGAACGTTTGAACTGGAATAAGAAAACTCCTAGCCCCTTGGAGACGCTGACTGAAAACGCAAAAGGAGCAATCGCAGAGTGGGCTCTGCACCCGGAAGACACTTACATTATGAATATGAAGAAAATTCAGAACGTCATGGTGACAACAATGGGTGTCTATATCCCAACTCGACAGCAAGGATATTACCTAGGTTTTGTCCGAACTGGAGAGTATGGAGCTGCGTTCCCAGCAGTCTCCTATACATGAACTTACGCCCTGGGCCGATAATGGGAAATTCGGCGGGAACTCTACCTAGCATGGCACATAATCCACACCTTTTGAACATATGCCATGAAAGTTGCTAGATGAGCCTGAAAATCGAACACAAAATTCTTATCACCATGTCTCAATCAACTCCCCAAAACATCAACACCACCCCATCAAACCCTACCCTCATCGGACAACCTGAAGTTTCAACTCATGATACCACTGAGTTTGTTACTGAAGGCAACGTCCCTCAAGCTTCTTTTGTGGATCAACAAAATGCACAAGATCAGTATTTTGTTAATGCAGACAGTGTTTCTCATGAGATTGCTGACTTTGTTAGTCGACCTTACCGATTTCACACAGGACAATGGAAGTCTGGAAGCGCTCTAGGCACTGTACTTTTCAGTGATCTAGTTGTTGCTACCTTGCGAAATTCTCCAGTGTGGACGAAGTTACAGGGCTTCATGGCTTTTACGGCGACTTTTTGTTTCCGTTTAGTTGTCAATGCCCAACCGACGCAACAAGGTGAGCTTA

TGCTCAATTTTCGACCTGATGAAACTGATGAAGATTCAAAGTCTTTTCGCTTTTGGAACAAAATGGTGGATCCAGCTTACGAGCTTGCCCGTGTATCCGGATGCCCTAATGCAACTTTGACTATCGGTAGCACTTCACAATGTGAATTCCGTGTGTCTTATCGCGCAACAGTTCCACTTTGCGACGTTTCCAACGGAGAATTTGGTAAGATTGACCTGAGAGTGTTATCCACTCTGGCCGGCCCTACAAACGCCGAGGCAGTATCGTACAGTATGTACATGTGGTTGGAGGATTTACAAACCTACGCCACGCAACCTTACTCAGGAACATCATCTTATTCTCAAATTGGCAACCGAGCAGCTAAAGCACAAGGTCGAGCTCTTCCATCCGCTGTTGAGGCAAAAGAAAAAGGCACTATTAGTGGTATTGCAGACAAAGTTGGCTCAATCGCGTCTGCTCTTACTGCTATTCCAGGCGTGGCGGACATCGCTGGTCCAGTCTCTTGGGCTGCGAAAGGCGTTTCGTCTGTGGCTTCTTTGTTTGGTTTTTCGAAACCGCATGACATAACTCCATCTGCAGCCATAACGAATAATCCTTACAAGGATTTCGCACACGGCTCAGGAGCTAATGCCTGCGAGACGAAACTAACACTGAATGACACTTCTGAATTGTCTGTTCGGCCACTTGGAGCAGTGCCTGAAGACGAGATGAACATCAATTACCTCACTAAGATCCCAATTTACCTCGCCAACCGAACATGGAAAACCACTGATGCTGTTGATAAAATTGTCTTCAACGCACCCGTTGCGCCTCAGTACATGATTTCACGTTCTGGTCAGGCTGGAAAGAAGGCTTTCACCGTTCATACCACACTCTCATACCTTGCTCTCATGCATCGCTATTGGAGAGGGTCCCTTAGCTTTACGTTTAACATCGTAGGTACGAAGTTTCATAGTGGTCGCTTGCGCGCCACTTTTACTCCGTCAAGAAAATGGACTCC

CCCCGATCAGCATCAACACACTTATTCCAAAATTTTTGATCTTGAAGACTCCAATACTTTTACCCTTACTACACCGTGGGTGAAGGAACTTCCTGTGAGAAGCACCGATCGAATGTCGAATTACGAAGAAGTTGAGGGTTTCATTACCCTCTCGGTCGAAGATCAGTTGGTTGCTAACTCAACATGTGCTCAATACGTTGACATTGTTTGTTTCGTATCTGGAGATGTCTCTTTCTCTGCACCACGTATCCCTGATGAACATGTAGCCAATGGAGTGGTTTTTAACCCCACTTCAACAGGACGAGCTGCTAAAGCACAGGGCTTCACAGCAGATGTCGCAAGTGCGCGAGTTGCTGTGATGAACATGGTTCCAGATGAAGTTGTCCCGACTGCAGCACAAGAACAACGTGCACTCGAAGTCACTGTGGGCGACCCTGAACCTTCCTTACGAACACTAACTAAACGTATGGCATATAATGGAGTTTTTACCTTCAAAGATAAGAACGCTGATATACGCGAGCACTGCATCCTACCATCTAACCAGCTGCAAGCTGAGTTGGCCTCCGCGATTACGAGCGATCAAGTTGCCACTTATGGTGACTACATCGACTGGGTTTCCGCCCTTTATCGTTTTCGCGCTGGAGGTATTCGCTACTGCATTTATGGTGATCTTCCAAAACCGGAAAACACTCTTGTTAAATTCTGTCCTCTGGACGGCACAAACTTGATTATTCCGGCTTATGAAGTCACCTCGGCAGGAGTTGGAACCTTTAAAGCCACTATTGCACGGTTTATGCAAATGCTCAACTATGTCACTGTTCCTTATGCCAAGAACAACTATGGCATTCAAATAAGTGTCCCATACTATCATGATAGACCAGCACTCACAAATTCACGCTGGTTTGTCCCAAACCCCCTACCTATCACAACCACGATTGGCGCCGGTTACGACCCGGTGTCGACGTGCGATTCGTACGTGGCCATATCTAATTTGGCTCCT

AACGATACGGATCTCACGAAGAATCGCCTTTTTGTCTTTCGCGCAGCAGCGGACGATTTTAATTGCGGTTTCTTTACTGGCCCCCCCATTACGTATCGAAACATTACCTCATAATTTATTTCATACAACAGCTACTGAACAATCGGAATCAAAATGCGACGATTGTTTGGTAACTTTCATCACGCAATTCTCCTTCACTGTGTTTTACAGTGAGCGAGTTGAAGAGTTTCTATATTTCTTCTCTTTGTAATTT

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BWX12_gp1

MAYSTSQPQNNKTPKNPPPQKQQRLLTEVLRSLEATGELVTEGCCSLHCERPYFIYSHGSRTVVKSAGGVEECVFDDMPTRVFYHCKTHFEHRDVMTAIRAFGHAEVAELLNLTGKPSYTRKLRTCPKGCSSCGQLDCKCATPMCYTDSSDNDESEDSCRENEVWGYYTLRTISKWQRFLPRAAKAQSNFLQDAFHSVSVFFSSALNSLKGLGERAIKAALRAVFGYAVDVLKEYFPSVNGPVMHFYALIVVTLCMYAMKIPGEVRGALITLYSYVVELSLPVEIGALVMNIFIGGSWRDTPHRRARAQSGDDLQSLVTKAVMGLAAYCMTQAVPDTKATSEFLVKCDRVPKAIRGIGNIVEYLTTVWDYIQKQMAKHFGWEYKIDSEIPIDVISNHEKIVFLGHADQRSQIPFDATIREQVKDAYLTYHRLRLLHQPSRTIQTFMDKYGGIIGTLMSKVSDSTAGQTENRQKPVVVFLKGGTGVGKSELLYFMGTDVLVDSKILTPEMTDDAIKRKINACMYPRYVENEYWDAYNEQPICLYDDFGQMTDSPTNPNLEFMELIRSANRFPYAVHMADISQKNNTFFRSQYIFATTNLDSIDPRSVVDPAAVRSRIDFGYNISVKKEFQVNPEGTREEDHKLDRTKLVASDGPTLAIYEICRWDPVTGNVCANETLSFPEMMAEIKLKRRAYAQHHEKSSETFVSYARRRMAVAQGWPQLHRFLRFSPEEIRTRPVRATFCFLLNEIALECREMITRAQTVMQQVWQKIRETVTKYVNGWALFGTLCGMLTYFFLRGSPKKGEDDYDDETAALLAKRPRYEILAWMDDAEKEYFREKRRLPPRISQALQDDRMPIPLWKAKGDEIDQFQQIWTNDEAIEELMDEGEAAYLAETGILPPSVLDKIPPNRHIRSESGRDLPRIIARIEGRKAKSQAFSSKQALEVVNVARANQIWLEYAPGVKALALAVGGRKVLLNRHYWKLFGDKFYYQSMTSKSRIEVK

KEEVEIQEIPRSNYVDAILITLPRRVPMSRSLWSHFIRKKDLISLPGKYALLASRELDGSTTLKSGKIRKFATEKIDMDHESGFLSEKMTFFDSDIRTIDGDCGAFVVLDDDQFAGKICGFHFAGFYEGGALSVPLVYEDFEVLMSGSPTLVVPKEVLPEEGETFRHATFQGRVRRGVNNPTTTSFVKTDIFGLVSPSEMAPAVLAPLSRENGPGRKALMKVDQDVPYIEPLKLEKAKESFKEKLFSFPNKKPFVLTFEQAVAGEDSLRFAKGINRAHSAGYPWMLESTKGKRKWFGDDEWILDSPEALKVKAEVERKIELMKNNQYEPSLYVDTLKDETRDLERVALGKTRVFSAAPMDYIILMRMYFLSFFSFVMEHRNENEISVGTQAQSPDWDLMTKRILSNHGGIIAGDFSNFDGTLHSEILMTVLDIINEWYDDGAENQRIREFIFEDVVHSWHLTEKEVNSWNHSQPSGNPGTAIFNSMYNSLIMRLCYYDLEPMNMYELDTFNRNVVMVSYGDDNLLSVSPSANWYTQRTITDAMVPYGMTYTMETKSGEVCDYRTIEEVQYLQRFFRFEPKISMWVAPLKARSINERLNWNKKTPSPLETLTENAKGAIAEWALHPEDTYIMNMKKIQNVMVTTMGVYIPTRQQGYYLGFVRTGEYGAAFPAVSYT*

BWX12_gp2

MSLKIEHKILITMSQSTPQNINTTPSNPTLIGQPEVSTHDTTEFVTEGNVPQASFVDQQNAQDQYFVNADSVSHEIADFVSRPYRFHTGQWKSGSALGTVLFSDLVVATLRNSPVWTKLQGFMAFTATFCFRLVVNAQPTQQGELMLNFRPDETDEDSKSFRFWNKMVDPAYELARVSGCPNATLTIGSTSQCEFRVSYRATVPLCDVSNGEFGKIDLRVLSTLAGPTNAEAVSYSMYMWLEDLQTYATQPYSGTSSYSQIGNRAAKAQGRALPSAVEAKEKGTISGIADKVGSIASALTAIPGVADIAGPVSWAAKGVSSVASLFGFSKPHDITPSAAITNNPYKDFAHGSGANACETKLTLNDTSELSVRPLGAVPEDEMNINYLTKIPIYLANRTWKTTDAVDKIVFNAPVAPQYMISRSGQAGKKAFTVHTTLSYLALMHRYWRGSLSFTFNIVGTKFHSGRLRATFTPSRKWTPPDQHQHTYSKIFDLEDSNTFTLTTPWVKELPVRSTDRMSNYEEVEGFITLSVEDQLVANSTCAQYVDIVCFVSGDVSFSAPRIPDEHVANGVVFNPTSTGRAAKAQGFTADVASARVAVMNMVPDEVVPTAAQEQRALEVTVGDPEPSLRTLTKRMAYNGVFTFKDKNADIREHCILPSNQLQAELASAITSDQVATYGDYIDWVSALYRFRAGGIRYCIYGDLPKPENTLVKFCPLDGTNLIIPAYEVTSAGVGTFKATIARFMQMLNYVTVPYAKNNYGIQISVPYYHDRPALTNSRWFVPNPLPITTTIGAGYDPVSTCDSYVAISNLAPNDTDLTKNRLFVFRAAADDFNCGFFTGPPITYRNITS*

Alignment Detailed Statistics


	Begin	End	Coverage	Score	Concordance	Matches	Identities	I/D/M/F^*	Stop Codons
NT	4763	4898	1.6%	152	55.9%	136 (100%)	106 (77.9%)	0/0
Mutations:	4764A>T 4770T>C 4771C>G 4772A>C 4773G>C 4775G>A 4776C>A 4782A>G 4783G>A 4794T>C 4803C>G 4806C>G 4809T>C 4812G>A 4818T>C 4819T>A 4821G>T 4828A>C 4829A>G 4839C>T 4842T>C 4854C>G 4860A>C 4875C>A 4878G>A 4881A>C 4882A>G 4884T>G 4890C>T 4893T>A
CDS

BWX12_gp1	1443	1487	2.7%	318	89.6%	45 (100%)	38 (84.4%)	0/0/0/0	0
Protein mutations:	Q1445A (4771C>G 4772A>C 4773G>C) R1446Q (4775G>A 4776C>A) E1449K (4783G>A) L1461I (4819T>A 4821G>T) K1464R (4828A>C 4829A>G) I1482V (4882A>G 4884T>G)
Codon mutations:	GCA1442.CT (4764A>T) AAT1444AAC (4770T>C) CAG1445GCC (4771C>G 4772A>C 4773G>C) CGC1446CAA (4775G>A 4776C>A) CGA1448CGG (4782A>G) GAA1449AAA (4783G>A) TTT1452TTC (4794T>C) GTC1455GTG (4803C>G) GTC1456GTG (4806C>G) CAT1457CAC (4809T>C) TCG1458TCA (4812G>A) CAT1460CAC (4818T>C) TTG1461ATT (4819T>A 4821G>T) AAA1464CGA (4828A>C 4829A>G) AAC1467AAT (4839C>T) TCT1468TCC (4842T>C) TCC1472TCG (4854C>G) CCA1474CCC (4860A>C) GGC1479GGA (4875C>A) ACG1480ACA (4878G>A) GCA1481GCC (4881A>C) ATT1482GTG (4882A>G 4884T>G) AAC1484AAT (4890C>T) TCT1485TCA (4893T>A)
Proteins

hypothetical protein 1 (YP_009337725.1)	1443	1487	2.7%	318	89.6%	45 (100%)	38 (84.4%)	0/0/0/0	0
Protein mutations:	Q1445A (4771C>G 4772A>C 4773G>C) R1446Q (4775G>A 4776C>A) E1449K (4783G>A) L1461I (4819T>A 4821G>T) K1464R (4828A>C 4829A>G) I1482V (4882A>G 4884T>G)
Codon mutations:	GCA1442.CT (4764A>T) AAT1444AAC (4770T>C) CAG1445GCC (4771C>G 4772A>C 4773G>C) CGC1446CAA (4775G>A 4776C>A) CGA1448CGG (4782A>G) GAA1449AAA (4783G>A) TTT1452TTC (4794T>C) GTC1455GTG (4803C>G) GTC1456GTG (4806C>G) CAT1457CAC (4809T>C) TCG1458TCA (4812G>A) CAT1460CAC (4818T>C) TTG1461ATT (4819T>A 4821G>T) AAA1464CGA (4828A>C 4829A>G) AAC1467AAT (4839C>T) TCT1468TCC (4842T>C) TCC1472TCG (4854C>G) CCA1474CCC (4860A>C) GGC1479GGA (4875C>A) ACG1480ACA (4878G>A) GCA1481GCC (4881A>C) ATT1482GTG (4882A>G 4884T>G) AAC1484AAT (4890C>T) TCT1485TCA (4893T>A)

^*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43