Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Pepino mosaic virus

Assembly

6411 (1 contig(s))
37891.8
2149356
138686.01 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Pepino mosaic virus (Taxonomy ID: 112229)
79.1576
89.2504
5
5

Alignment

7430.0 (NT) + 13204.0 (AA) = 20634.0
75.1968
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT31644199.4%743058.2%6402 (99.7%)5074 (79.0%)8/9
Mutations:
104T>C 110G>A 122A>G 137G>A 140C>T 158C>T 161T>C 171C>A 179A>G 182T>C 185A>G 191T>C 200T>C 209C>T 221T>C 246C>T 248T>A 258A>G 260T>A 284C>T 287A>T 293C>G 299C>T 305A>T 308C>G 315C>A 317T>A 323T>A 338T>C 347T>C 350A>G 353T>C 356A>G 362A>T 365T>C 371C>T 381C>A 383T>A 389G>A 393C>A 395T>A 402A>C 416G>A 428C>T 434C>T 440T>C 443C>T 446T>A 452A>C 455A>G 458C>T 476A>G 479G>A 488A>T 491C>T 494C>T 497T>C 503T>G 504G>A 506T>C 509G>C 512A>G 518A>T 524T>C 527A>C 539C>T 542T>C 551T>A 563T>C 567T>C 569G>C 584A>C 587C>T 597T>C 611T>C 614A>T 615C>T 623G>T 629T>C 632A>C 637G>A 641G>A 648C>T 653C>T 656T>A 662T>A 674C>T 689C>T 704A>T 707A>T 710A>T 713C>T 719T>A 728T>C 731C>T 734C>T 737A>G 746C>A 747C>T 752A>C 774A>G 779A>C 782T>G 785T>C 788A>C 791G>A 797T>A 798T>C 800A>C 801A>C 802A>G 812T>A 815G>C 834C>T 836T>A 839T>A 848C>T 872C>T 878G>A 881G>A 884G>T 885C>T 905G>A 911T>C 920A>C 923C>T 926A>T 929T>C 932A>C 943G>A 947C>T 950C>T 962A>G 965T>C 971T>A 977A>C 983C>A 986A>T 995C>T 1004G>C 1010A>T 1013A>C 1019A>G 1022T>G 1025G>A 1037A>C 1043C>G 1046G>A 1049T>A 1052A>G 1058G>T 1061T>A 1064C>T 1067T>A 1073G>A 1076A>T 1100C>T 1103G>A 1106C>T 1107G>A 1112A>C 1122A>G 1130G>C 1134C>G 1139G>A 1140T>A 1141C>G 1142A>C 1145T>A 1151T>C 1154T>C 1163C>T 1175C>A 1181C>T 1193G>T 1211C>T 1238C>T 1247G>A 1253C>T 1265G>T 1266C>T 1268C>A 1271A>T 1289T>C 1292T>C 1295C>T 1298T>C 1301T>C 1307G>A 1317C>T 1319T>A 1322A>T 1326A>G 1339C>A 1340T>A 1343A>T 1346A>C 1349A>G 1355A>C 1356A>T 1358C>T 1361T>A 1364A>T 1367T>G 1376T>C 1388G>A 1391G>A 1392C>T 1397T>C 1398C>A 1400A>T 1403G>A 1410A>C 1415T>C 1416A>G 1419A>G 1422T>A 1424C>A 1430A>T 1436T>C 1437G>A 1440C>G 1442G>A 1443A>G 1444G>C 1445A>G 1448A>C 1450C>A 1451T>G 1452G>C 1454A>T 1455A>G 1457A>G 1458A>G 1459C>A 1460T>G 1467G>C 1469G>C 1475G>C 1481A>G 1482A>T 1483C>T 1486G>A 1487G>A 1488C>T 1491C>A 1492A>C 1493A>T 1496G>T 1500T>C 1501G>C 1503G>C 1504T>A 1505T>C 1506A>C 1507C>G 1508T>G 1510A>G 1511T>C 1515A>G 1517T>A 1523A>C 1524G>A 1526A>C 1529A>C 1533T>C 1535A>T 1538T>C 1539C>A 1542T>G 1543C>A 1544T>G 1545G>A 1546C>T 1547A>T 1548C>A 1549T>A 1553T>G 1556A>T 1557C>G 1558A>T 1559G>A 1563C>G 1566T>A 1571A>C 1572T>G 1573C>G 1574T>C 1575T>A 1579G>A 1580C>T 1581A>G 1582G>A 1583T>A 1584C>A 1585A>C 1586T>A 1587A>T 1589A>G 1591C>T 1592C>T 1593T>A 1594G>A 1607C>T 1617A>T 1619T>A 1620G>T 1621A>C 1624A>C 1625C>T 1628C>A 1629A>C 1633C>T 1634T>G 1635G>C 1636C>A 1637G>A 1640C>T 1641A>G 1646T>A 1655A>G 1659C>T 1662T>C 1664G>C 1668G>A 1670A>C 1673G>C 1674A>G 1675T>A 1677A>G 1678T>C 1679A>G 1682T>A 1685T>A 1686C>A 1687A>T 1689C>T 1691C>G 1694A>C 1695G>C 1697A>T 1698T>G 1699T>C 1700G>A 1702C>A 1703A>T 1704C>G 1705A>T 1706C>T 1709G>A 1718C>T 1721T>C 1722T>C 1723A>T 1727T>A 1730A>T 1739A>C 1740T>A 1741C>G 1744T>C 1745G>T 1748G>A 1757G>A 1760T>C 1763G>A 1764A>G 1766C>T 1770A>G 1772T>G 1776G>A 1781T>G 1787C>A 1788T>C 1789C>A 1791C>A 1793G>A 1796G>T 1800A>G 1801A>C 1804A>G 1805_1806insTGCAGC 1806G>T 1807T>A 1808G>C 1810A>T 1811G>T 1815A>C 1817T>A 1819C>A 1821C>A 1823T>G 1826T>A 1828A>T 1829C>G 1830_1832delCAT 1833G>T 1836G>A 1837T>A 1838T>A 1839T>C 1840T>C 1841T>C 1842G>A 1844C>G 1845A>G 1847A>T 1851C>G 1853G>T 1855G>A 1857_1862delTCCGGA 1863G>A 1871A>C 1877A>T 1880A>T 1886T>C 1890C>T 1892T>G 1895G>T 1913G>A 1919C>T 1923C>T 1925T>A 1932A>G 1934T>C 1937G>A 1943C>T 1946A>C 1947G>T 1952T>A 1958A>C 1964G>A 1970C>T 1973T>C 1976C>T 1977A>T 1978A>C 1980A>C 1981C>A 1982A>G 1985A>T 1994G>C 1997C>T 2000A>G 2003C>T 2004A>T 2005G>C 2006C>T 2007A>C 2009T>G 2012T>A 2013G>T 2014C>G 2015A>T 2018T>A 2025A>G 2027T>A 2030A>T 2031C>T 2034C>A 2036A>G 2039C>A 2045A>G 2046A>C 2048A>T 2051A>T 2054G>C 2063T>C 2066T>A 2069T>A 2075T>C 2076C>A 2078A>G 2084A>T 2096C>T 2102T>C 2105C>A 2111C>T 2114T>C 2117G>A 2120C>T 2127T>C 2129A>T 2135T>C 2136T>A 2137C>A 2142T>A 2143C>G 2144A>C 2155G>A 2156G>A 2162T>C 2195T>C 2201T>A 2204A>T 2207A>T 2213T>A 2219C>T 2222T>C 2225C>A 2228C>T 2234A>C 2240A>C 2243A>G 2258T>C 2259C>T 2261C>G 2267T>A 2268C>T 2270T>G 2273C>T 2276C>T 2279T>A 2285C>T 2291C>T 2294A>T 2297G>T 2300T>A 2303G>A 2306A>C 2318C>T 2327T>C 2333G>A 2340T>C 2342G>C 2343T>C 2344G>A 2347A>G 2348G>A 2349C>T 2351A>G 2360A>G 2363C>T 2366T>C 2378A>G 2396A>T 2399A>C 2402C>T 2406G>A 2414C>A 2423C>T 2429T>C 2432A>G 2444T>C 2456C>A 2459T>C 2460T>C 2462G>A 2465C>T 2483A>G 2492T>A 2501A>T 2504C>T 2507G>T 2508C>A 2516T>C 2519A>G 2522T>C 2528G>A 2531C>T 2543A>G 2567C>T 2570C>T 2573T>A 2576T>C 2579T>C 2585C>T 2591T>C 2594A>T 2600C>T 2601C>T 2612A>T 2624T>C 2627C>T 2633G>A 2639T>C 2642G>A 2645A>T 2669T>A 2673C>T 2675C>G 2681T>C 2684C>T 2690C>T 2694A>C 2699T>C 2700C>T 2726G>A 2729G>T 2732C>T 2744G>A 2757C>T 2758A>T 2765A>T 2768G>A 2771C>T 2775G>T 2786C>T 2792G>T 2795T>C 2801G>T 2802C>T 2804T>A 2807T>A 2813G>C 2815G>A 2816A>G 2819C>A 2826T>C 2828G>C 2834C>T 2843A>G 2849C>T 2855A>T 2861G>A 2864G>T 2873T>C 2879C>G 2882C>T 2883A>C 2885A>T 2888T>A 2891G>T 2906T>C 2915A>T 2918C>T 2921A>C 2930T>A 2942C>T 2951G>A 2972A>C 2975T>C 2982A>G 2983C>T 2984T>C 2987C>T 2996G>A 3002A>T 3038C>A 3039G>A 3053T>A 3056A>T 3057T>G 3059G>T 3062T>A 3065C>T 3068T>C 3074G>A 3075T>G 3080C>T 3083C>A 3092G>A 3095A>G 3098G>A 3107A>T 3110G>T 3111C>T 3113T>G 3128A>T 3131A>G 3134G>A 3135T>A 3137A>T 3143T>C 3146A>G 3149C>T 3155A>C 3156T>C 3158T>C 3164T>C 3179A>G 3182T>C 3185A>T 3191G>C 3203G>A 3215C>G 3221T>C 3224A>G 3230T>C 3233C>T 3239A>T 3245A>T 3255C>T 3257T>G 3260T>C 3263T>A 3272G>T 3278C>A 3282T>C 3284A>C 3285C>A 3294G>T 3299A>T 3317T>C 3320C>T 3321T>C 3323G>C 3326T>C 3338C>T 3343T>C 3344C>G 3353A>G 3362C>T 3365A>T 3368G>T 3371T>C 3374C>T 3377G>A 3378C>G 3379C>A 3382G>A 3383A>G 3386A>C 3392A>G 3395A>C 3410T>G 3416T>C 3419A>T 3422C>T 3423T>C 3425A>T 3434A>C 3440T>C 3443C>T 3444T>C 3446G>T 3455T>G 3458T>A 3461C>T 3470T>A 3473T>C 3476T>C 3479C>T 3483G>T 3488C>T 3491A>G 3494T>C 3497C>A 3498C>T 3500G>A 3509A>G 3521C>G 3524G>A 3537T>C 3539A>T 3542T>A 3546G>A 3551G>A 3557G>A 3563C>T 3572T>A 3575A>T 3581C>T 3596G>C 3608G>T 3611C>T 3620A>G 3624C>T 3626C>A 3629A>G 3632G>A 3636A>C 3638A>G 3647T>C 3650A>G 3659T>C 3662T>A 3680A>C 3690A>G 3695G>C 3698C>T 3699C>A 3707T>C 3711C>G 3713A>T 3716T>C 3734A>C 3737T>C 3740G>A 3749T>C 3755A>T 3764C>T 3767A>G 3779T>A 3806G>A 3815C>T 3818C>T 3821T>C 3824C>T 3827T>A 3830C>T 3833C>T 3834A>G 3845A>C 3860A>G 3861T>C 3866C>T 3869C>A 3878T>C 3884C>A 3888T>C 3890G>C 3893C>A 3896T>A 3902G>A 3903T>C 3905G>T 3920A>C 3923T>A 3929T>C 3932C>T 3938A>T 3941A>G 3947A>G 3950A>T 3956T>C 3962T>C 3970A>T 3975C>A 3980T>C 3981T>A 3982C>A 3983T>C 3986A>T 3989C>T 3995G>A 3998T>G 4004T>C 4007A>T 4010T>C 4013T>C 4034C>G 4035C>A 4036A>G 4037A>T 4043A>G 4044C>A 4045C>A 4046C>A 4049T>A 4052T>C 4054A>G 4055A>G 4058A>G 4059C>T 4064G>A 4067C>T 4068A>C 4069A>T 4070G>A 4073T>A 4082C>T 4088G>A 4091A>G 4094A>G 4096T>A 4097T>C 4115T>G 4121T>C 4130C>T 4148T>A 4151T>A 4154T>G 4160C>A 4169C>T 4172T>A 4173T>C 4175G>T 4187T>C 4190C>A 4197T>C 4205G>A 4208A>C 4211C>T 4218T>C 4220A>G 4226T>A 4229T>A 4238A>T 4244C>A 4256A>G 4277T>C 4278G>C 4280G>A 4286C>T 4287A>G 4289T>C 4293T>C 4298A>C 4301A>C 4319C>T 4325T>A 4331T>G 4332C>A 4334G>A 4338T>C 4340G>T 4346G>A 4347T>C 4349A>C 4352C>T 4358A>C 4361A>G 4364A>C 4368A>C 4370A>T 4376T>G 4379A>G 4382G>A 4385C>T 4388T>A 4393A>G 4395G>T 4400A>C 4405G>A 4428C>T 4447C>T 4452T>C 4463A>T 4464A>G 4467G>A 4471C>A 4473C>A 4476C>T 4479G>A 4481C>A 4482A>C 4485A>G 4486C>A 4488C>T 4490G>A 4491T>C 4492G>A 4493T>C 4502C>T 4506A>T 4524A>T 4527C>A 4542T>A 4545A>G 4566T>A 4602C>T 4605T>C 4615C>G 4616A>C 4617A>T 4620C>T 4639T>C 4641A>T 4647C>T 4653C>A 4660C>T 4661A>T 4662T>G 4668T>C 4674C>T 4677T>C 4683T>C 4687T>C 4689G>C 4690C>T 4703T>C 4704A>T 4714T>C 4716G>A 4719T>C 4722C>T 4740A>G 4746A>T 4755G>A 4758A>G 4759C>T 4761T>G 4765G>A 4766T>C 4767C>A 4770A>C 4771C>A 4773T>C 4779T>A 4791T>A 4794T>C 4795A>C 4803A>C 4806G>A 4809A>C 4817A>C 4818G>T 4819A>C 4821T>A 4822T>C 4824G>A 4830A>G 4831C>T 4833G>A 4839C>T 4845T>C 4848A>T 4850T>A 4851C>G 4857T>C 4860G>A 4861A>G 4862A>T 4864G>C 4874T>C 4875C>A 4878T>A 4883T>A 4888A>G 4890C>T 4896T>C 4898A>C 4902T>G 4909A>T 4914G>A 4917T>C 4920C>T 4926C>T 4929T>A 4933G>A 4941C>T 4947C>A 4953T>A 4954T>G 4955C>G 4959C>T 4965G>T 4967T>A 4971C>T 4974T>A 4980A>T 4983G>A 4992A>T 4995A>T 4998T>C 5005G>A 5006C>G 5007A>T 5011A>G 5012C>T 5013A>T 5025C>T 5028A>C 5032T>C 5034G>T 5037C>T 5039C>G 5040A>T 5047G>C 5048C>A 5049T>A 5061T>C 5064G>A 5067T>C 5073C>T 5076T>A 5079G>C 5091C>T 5092C>T 5093A>C 5094C>A 5097A>G 5103C>A 5109G>T 5128A>G 5143C>T 5146C>T 5155A>G 5158C>T 5170C>T 5173T>A 5176T>C 5179C>T 5180T>C 5182G>A 5183T>C 5209T>C 5212C>T 5215C>T 5218C>T 5224T>A 5230T>A 5233A>T 5236C>T 5239C>T 5246C>A 5248T>A 5249T>C 5251G>A 5254T>C 5263C>T 5266A>G 5278C>A 5281C>T 5284A>G 5290A>T 5293C>T 5296T>C 5302A>G 5305A>G 5308G>A 5311G>A 5314A>C 5323T>C 5326T>A 5335A>G 5336T>C 5338A>T 5365C>T 5368G>A 5369T>C 5405T>A 5410T>C 5415C>A 5429T>C 5430C>A 5437T>C 5449A>T 5456A>C 5458C>A 5460A>C 5461T>A 5462A>G 5463C>G 5464A>T 5468C>T 5471T>G 5474T>C 5479C>T 5490A>G 5495T>A 5498A>C 5504C>T 5517G>C 5518A>C 5519G>A 5528A>C 5534G>T 5546A>C 5580A>C 5585T>G 5586G>T 5587A>G 5592T>C 5594G>T 5595T>A 5596A>T 5600A>T 5601G>T 5602T>A 5603G>T 5604T>C 5606C>A 5607A>G 5608C>T 5609A>T 5613A>T 5618C>A 5619T>C 5620T>A 5621C>A 5622A>T 5623A>T 5627A>C 5627_5628insT 5631T>C 5632C>T 5636C>G 5637C>A 5638T>A 5639G>A 5642A>C 5643C>A 5645A>C 5647A>T 5648C>A 5650T>A 5652T>C 5654G>T 5657G>A 5658C>A 5660A>C 5662T>A 5666A>G 5667G>A 5677C>A 5680A>T 5683C>T 5684A>G 5685A>C 5686A>T 5687G>C 5689T>A 5699A>C 5701A>G 5702G>A 5703C>G 5704T>C 5707T>A 5708T>G 5710T>C 5725C>T 5738A>T 5739G>C 5740T>C 5743C>A 5758A>G 5759G>A 5764G>A 5767T>C 5770C>G 5773C>A 5776C>T 5779G>C 5782C>T 5785C>A 5788G>T 5794A>G 5797A>T 5809A>G 5815A>T 5821A>G 5827C>T 5830C>T 5833T>C 5839C>T 5840C>T 5842T>A 5845C>A 5857T>C 5860T>A 5863G>T 5875T>C 5878A>C 5887A>T 5902G>A 5908T>A 5914G>T 5920G>A 5923G>T 5926T>A 5929A>T 5932T>C 5935C>A 5938T>A 5950A>T 5951C>T 5953A>G 5956A>T 5957C>A 5959C>A 5962A>T 5965C>A 5974T>A 5986A>T 5995A>C 5998C>A 6004G>A 6010T>C 6019C>T 6025C>A 6029G>A 6046T>G 6047C>T 6049C>A 6058C>T 6059A>G 6061T>G 6067A>T 6070A>C 6073T>C 6079C>A 6083C>T 6085T>G 6088T>C 6091C>T 6094A>G 6103A>C 6106A>G 6115A>T 6127C>T 6139C>A 6142C>T 6145T>A 6148C>T 6151C>T 6154G>A 6163T>A 6169T>C 6172T>A 6184A>C 6196A>G 6199A>T 6211C>G 6214A>T 6220G>A 6223C>T 6230T>C 6232G>T 6235T>C 6236A>C 6238G>C 6241A>G 6244G>A 6247C>A 6253A>T 6259T>C 6262T>C 6265T>C 6271A>C 6277A>T 6283C>T 6292A>T 6301A>C 6304A>C 6307T>C 6313C>T 6322G>A 6325A>T 6328C>T 6334C>T 6380C>T 6392_6393insC 6394A>T 6396T>G 6400T>C 6402C>A 6403T>A 6404T>A 6406G>C 6407A>T 6409A>C 6414A>T
CDS
11440100%904390.4%1437 (99.7%)1288 (89.3%)2/3/0/01
Protein mutations:
I58V (258A>G 260T>A) D140N (504G>A 506T>C) Q166H (584A>C) R184K (637G>A) E222D (752A>C) I230V (774A>G) H232Q (782T>G) K239R (801A>C 802A>G) R286Q (943G>A) V341I (1107G>A) T346A (1122A>G) Q350E (1134C>G) T414A (1326A>G) A418E (1339C>A 1340T>A) S424C (1356A>T 1358C>T) N425K (1361T>A) Q438N (1398C>A 1400A>T) K442Q (1410A>C) T444A (1416A>G) I445V (1419A>G) S446T (1422T>A 1424C>A) E451K (1437G>A) Q452E (1440C>G 1442G>A) R453A (1443A>G 1444G>C 1445A>G) E454D (1448A>C) P455Q (1450C>A 1451T>G) E456H (1452G>C 1454A>T) I457V (1455A>G 1457A>G) T458E (1458A>G 1459C>A 1460T>G) E461H (1467G>C 1469G>C) E463D (1475G>C) T466F (1482A>T 1483C>T) R467K (1486G>A 1487G>A) P468S (1488C>T) Q469T (1491C>A 1492A>C 1493A>T) C472P (1500T>C 1501G>C) V473H (1503G>C 1504T>A 1505T>C) T474R (1506A>C 1507C>G 1508T>G) N475S (1510A>G 1511T>C) N477E (1515A>G 1517T>A) V480I (1524G>A 1526A>C) K481N (1529A>C) L485I (1539C>A) S486E (1542T>G 1543C>A 1544T>G) A487I (1545G>A 1546C>T 1547A>T) L488N (1548C>A 1549T>A) D489E (1553T>G) E490D (1556A>T) Q491V (1557C>G 1558A>T 1559G>A) Q493E (1563C>G) C494S (1566T>A) S496G (1572T>G 1573C>G 1574T>C) S497T (1575T>A) S498N (1579G>A 1580C>T) S499E (1581A>G 1582G>A 1583T>A) H500T (1584C>A 1585A>C 1586T>A) I501L (1587A>T 1589A>G) P502L (1591C>T 1592C>T) C503N (1593T>A 1594G>A) T511S (1617A>T 1619T>A) D512S (1620G>T 1621A>C) D513A (1624A>C 1625C>T) D514E (1628C>A) N515H (1629A>C) A516V (1633C>T 1634T>G) A517Q (1635G>C 1636C>A 1637G>A) I519V (1641A>G) H520Q (1646T>A) E528N (1668G>A 1670A>C) I530E (1674A>G 1675T>A) I531A (1677A>G 1678T>C 1679A>G) Q534I (1686C>A 1687A>T) A537P (1695G>C 1697A>T) L538A (1698T>G 1699T>C 1700G>A) P539H (1702C>A 1703A>T) H540V (1704C>G 1705A>T 1706C>T) Y546L (1722T>C 1723A>T) M553T (1744T>C 1745G>T) N560D (1764A>G 1766C>T) I562V (1770A>G 1772T>G) E564K (1776G>A) S568Q (1788T>C 1789C>A) K570N (1796G>T) N572A (1800A>G 1801A>C) N573S (1804A>G) N573_V574insCS (1805_1806insTGCAGC) V574Y (1806G>T 1807T>A 1808G>C) Q575L (1810A>T 1811G>T) T577P (1815A>C 1817T>A) T578N (1819C>A) H579K (1821C>A 1823T>G) D580E (1826T>A) Y581L (1828A>T 1829C>G) H582del (1830_1832delCAT) A583S (1833G>T) V584K (1836G>A 1837T>A 1838T>A) F585P (1839T>C 1840T>C 1841T>C) D586K (1842G>A 1844C>G) T587A (1845A>G 1847A>T) Q589D (1851C>G 1853G>T) S590N (1855G>A) S591_G592del (1857_1862delTCCGGA) D593N (1863G>A) K597N (1877A>T) S616G (1932A>G 1934T>C) K620N (1946A>C) V621L (1947G>T) K631S (1977A>T 1978A>C) T632Q (1980A>C 1981C>A 1982A>G) E636D (1994G>C) I641L (2007A>C 2009T>G) A643C (2013G>T 2014C>G 2015A>T) D644E (2018T>A) N647E (2025A>G 2027T>A) N651K (2039C>A) S684N (2136T>A 2137C>A) R690K (2155G>A 2156G>A) C753H (2343T>C 2344G>A) K754R (2347A>G 2348G>A) V774I (2406G>A) N870H (2694A>C) Q891L (2757C>T 2758A>T) A897S (2775G>T) R910K (2815G>A 2816A>G) T966V (2982A>G 2983C>T 2984T>C) A985T (3039G>A) L991V (3057T>G 3059G>T) S997A (3075T>G) L1017I (3135T>A 3137A>T) Y1024H (3156T>C 3158T>C) V1070L (3294G>T) V1086A (3343T>C 3344C>G) P1098E (3378C>G 3379C>A) R1099K (3382G>A 3383A>G) A1133S (3483G>T) V1154I (3546G>A) N1202D (3690A>G) Q1205K (3699C>A) Q1209D (3711C>G 3713A>T) I1250V (3834A>G) Y1295F (3970A>T) L1297I (3975C>A) S1299N (3981T>A 3982C>A 3983T>C) Q1317S (4035C>A 4036A>G 4037A>T) P1320K (4044C>A 4045C>A 4046C>A) K1323R (4054A>G 4055A>G) K1328L (4068A>C 4069A>T 4070G>A) F1337Y (4096T>A 4097T>C) E1398Q (4278G>C 4280G>A) N1401D (4287A>G 4289T>C) K1436R (4393A>G) A1437S (4395G>T)
Codon mutations:
AAT6AAC (104T>C) TTG8TTA (110G>A) AGA12AGG (122A>G) CAG17CAA (137G>A) TCC18TCT (140C>T) GCC24GCT (158C>T) TAT25TAC (161T>C) CGA29AGA (171C>A) GTA31GTG (179A>G) CTT32CTC (182T>C) AAA33AAG (185A>G) TCT35TCC (191T>C) AAT38AAC (200T>C) TAC41TAT (209C>T) GAT45GAC (221T>C) CTT54TTA (246C>T 248T>A) ATT58GTA (258A>G 260T>A) CAC66CAT (284C>T) ACA67ACT (287A>T) GCC69GCG (293C>G) GCC71GCT (299C>T) GTA73GTT (305A>T) GTC74GTG (308C>G) CGT77AGA (315C>A 317T>A) CTT79CTA (323T>A) CAT84CAC (338T>C) CCT87CCC (347T>C) AAA88AAG (350A>G) GAT89GAC (353T>C) GAA90GAG (356A>G) GTA92GTT (362A>T) ACT93ACC (365T>C) ATC95ATT (371C>T) CGT99AGA (381C>A 383T>A) AAG101AAA (389G>A) CGT103AGA (393C>A 395T>A) AGA106CGA (402A>C) GTG110GTA (416G>A) GTC114GTT (428C>T) GTC116GTT (434C>T) CAT118CAC (440T>C) AAC119AAT (443C>T) ATT120ATA (446T>A) CCA122CCC (452A>C) AAA123AAG (455A>G) GAC124GAT (458C>T) GAA130GAG (476A>G) GAG131GAA (479G>A) TCA134TCT (488A>T) ACC135ACT (491C>T) AGC136AGT (494C>T) TTT137TTC (497T>C) GTT139GTG (503T>G) GAT140AAC (504G>A 506T>C) ACG141ACC (509G>C) AGA142AGG (512A>G) GCA144GCT (518A>T) ATT146ATC (524T>C) TCA147TCC (527A>C) CAC151CAT (539C>T) TTT152TTC (542T>C) CCT155CCA (551T>A) ACT159ACC (563T>C) TTG161CTC (567T>C 569G>C) CAA166CAC (584A>C) AAC167AAT (587C>T) TTG171CTG (597T>C) GTT175GTC (611T>C) GTA176GTT (614A>T) CTA177TTA (615C>T) GTG179GTT (623G>T) GCT181GCC (629T>C) ATA182ATC (632A>C) AGA184AAA (637G>A) CAG185CAA (641G>A) CTA188TTA (648C>T) TTC189TTT (653C>T) CCT190CCA (656T>A) ATT192ATA (662T>A) AAC196AAT (674C>T) GGC201GGT (689C>T) CCA206CCT (704A>T) GGA207GGT (707A>T) TCA208TCT (710A>T) CAC209CAT (713C>T) GGT211GGA (719T>A) TAT214TAC (728T>C) TTC215TTT (731C>T) CAC216CAT (734C>T) AAA217AAG (737A>G) ACC220ACA (746C>A) CTA221TTA (747C>T) GAA222GAC (752A>C) ATT230GTT (774A>G) GGA231GGC (779A>C) CAT232CAG (782T>G) GAT233GAC (785T>C) CCA234CCC (788A>C) TTG235TTA (791G>A) GGT237GGA (797T>A) TTA238CTC (798T>C 800A>C) AAA239CGA (801A>C 802A>G) ATT242ATA (812T>A) ACG243ACC (815G>C) CTT250TTA (834C>T 836T>A) GGT251GGA (839T>A) CAC254CAT (848C>T) AAC262AAT (872C>T) GAG264GAA (878G>A) ACG265ACA (881G>A) CCG266CCT (884G>T) CTA267TTA (885C>T) AAG273AAA (905G>A) AGT275AGC (911T>C) ACA278ACC (920A>C) TTC279TTT (923C>T) CCA280CCT (926A>T) AAT281AAC (929T>C) ATA282ATC (932A>C) CGA286CAA (943G>A) CAC287CAT (947C>T) GTC288GTT (950C>T) AAA292AAG (962A>G) CCT293CCC (965T>C) CCT295CCA (971T>A) TCA297TCC (977A>C) GCC299GCA (983C>A) ATA300ATT (986A>T) TAC303TAT (995C>T) GTG306GTC (1004G>C) TCA308TCT (1010A>T) GTA309GTC (1013A>C) AAA311AAG (1019A>G) GTT312GTG (1022T>G) ACG313ACA (1025G>A) ATA317ATC (1037A>C) GCC319GCG (1043C>G) AAG320AAA (1046G>A) GTT321GTA (1049T>A) AGA322AGG (1052A>G) CTG324CTT (1058G>T) ATT325ATA (1061T>A) TCC326TCT (1064C>T) ACT327ACA (1067T>A) GAG329GAA (1073G>A) CTA330CTT (1076A>T) CTC338CTT (1100C>T) ACG339ACA (1103G>A) CAC340CAT (1106C>T) GTT341ATT (1107G>A) GTA342GTC (1112A>C) ACA346GCA (1122A>G) GTG348GTC (1130G>C) CAA350GAA (1134C>G) CTG351CTA (1139G>A) TCA352AGC (1140T>A 1141C>G 1142A>C) TCT353TCA (1145T>A) AAT355AAC (1151T>C) GAT356GAC (1154T>C) AAC359AAT (1163C>T) TCC363TCA (1175C>A) TTC365TTT (1181C>T) CTG369CTT (1193G>T) CAC375CAT (1211C>T) TTC384TTT (1238C>T) AAG387AAA (1247G>A) GAC389GAT (1253C>T) CTG393CTT (1265G>T) CTC394TTA (1266C>T 1268C>A) ACA395ACT (1271A>T) GAT401GAC (1289T>C) TTT402TTC (1292T>C) TCC403TCT (1295C>T) TAT404TAC (1298T>C) ACT405ACC (1301T>C) AAG407AAA (1307G>A) CTT411TTA (1317C>T 1319T>A) GTA412GTT (1322A>T) ACT414GCT (1326A>G) GCT418GAA (1339C>A 1340T>A) ATA419ATT (1343A>T) GGA420GGC (1346A>C) CAA421CAG (1349A>G) ATA423ATC (1355A>C) AGC424TGT (1356A>T 1358C>T) AAT425AAA (1361T>A) GCA426GCT (1364A>T) GCT427GCG (1367T>G) TAT430TAC (1376T>C) AGG434AGA (1388G>A) CAG435CAA (1391G>A) CTG436TTG (1392C>T) ACT437ACC (1397T>C) CAA438AAT (1398C>A 1400A>T) TTG439TTA (1403G>A) AAA442CAA (1410A>C) GGT443GGC (1415T>C) ACA444GCA (1416A>G) ATA445GTA (1419A>G) TCC446ACA (1422T>A 1424C>A) GCA448GCT (1430A>T) TTT450TTC (1436T>C) GAA451AAA (1437G>A) CAG452GAA (1440C>G 1442G>A) AGA453GCG (1443A>G 1444G>C 1445A>G) GAA454GAC (1448A>C) CCT455CAG (1450C>A 1451T>G) GAA456CAT (1452G>C 1454A>T) ATA457GTG (1455A>G 1457A>G) ACT458GAG (1458A>G 1459C>A 1460T>G) GAG461CAC (1467G>C 1469G>C) GAG463GAC (1475G>C) GAA465GAG (1481A>G) ACT466TTT (1482A>T 1483C>T) AGG467AAA (1486G>A 1487G>A) CCC468TCC (1488C>T) CAA469ACT (1491C>A 1492A>C 1493A>T) GTG470GTT (1496G>T) TGC472CCC (1500T>C 1501G>C) GTT473CAC (1503G>C 1504T>A 1505T>C) ACT474CGG (1506A>C 1507C>G 1508T>G) AAT475AGC (1510A>G 1511T>C) AAT477GAA (1515A>G 1517T>A) GCA479GCC (1523A>C) GTA480ATC (1524G>A 1526A>C) AAA481AAC (1529A>C) TTA483CTT (1533T>C 1535A>T) GGT484GGC (1538T>C) CTT485ATT (1539C>A) TCT486GAG (1542T>G 1543C>A 1544T>G) GCA487ATT (1545G>A 1546C>T 1547A>T) CTT488AAT (1548C>A 1549T>A) GAT489GAG (1553T>G) GAA490GAT (1556A>T) CAG491GTA (1557C>G 1558A>T 1559G>A) CAA493GAA (1563C>G) TGT494AGT (1566T>A) TCA495TCC (1571A>C) TCT496GGC (1572T>G 1573C>G 1574T>C) TCT497ACT (1575T>A) AGC498AAT (1579G>A 1580C>T) AGT499GAA (1581A>G 1582G>A 1583T>A) CAT500ACA (1584C>A 1585A>C 1586T>A) ATA501TTG (1587A>T 1589A>G) CCC502CTT (1591C>T 1592C>T) TGC503AAC (1593T>A 1594G>A) TCC507TCT (1607C>T) ACT511TCA (1617A>T 1619T>A) GAT512TCT (1620G>T 1621A>C) GAC513GCT (1624A>C 1625C>T) GAC514GAA (1628C>A) AAT515CAT (1629A>C) GCT516GTG (1633C>T 1634T>G) GCG517CAA (1635G>C 1636C>A 1637G>A) GCC518GCT (1640C>T) ATT519GTT (1641A>G) CAT520CAA (1646T>A) GAA523GAG (1655A>G) CTA525TTA (1659C>T) TTG526CTC (1662T>C 1664G>C) GAA528AAC (1668G>A 1670A>C) CCG529CCC (1673G>C) ATA530GAA (1674A>G 1675T>A) ATA531GCG (1677A>G 1678T>C 1679A>G) GCT532GCA (1682T>A) CCT533CCA (1685T>A) CAA534ATA (1686C>A 1687A>T) CTC535TTG (1689C>T 1691C>G) CCA536CCC (1694A>C) GCA537CCT (1695G>C 1697A>T) TTG538GCA (1698T>G 1699T>C 1700G>A) CCA539CAT (1702C>A 1703A>T) CAC540GTT (1704C>G 1705A>T 1706C>T) AAG541AAA (1709G>A) GCC544GCT (1718C>T) AGT545AGC (1721T>C) TAT546CTT (1722T>C 1723A>T) GCT547GCA (1727T>A) TCA548TCT (1730A>T) TCA551TCC (1739A>C) TCC552AGC (1740T>A 1741C>G) ATG553ACT (1744T>C 1745G>T) AAG554AAA (1748G>A) GAG557GAA (1757G>A) ATT558ATC (1760T>C) GAG559GAA (1763G>A) AAC560GAT (1764A>G 1766C>T) ATT562GTG (1770A>G 1772T>G) GAG564AAG (1776G>A) CTT565CTG (1781T>G) ATC567ATA (1787C>A) TCA568CAA (1788T>C 1789C>A) CGG569AGA (1791C>A 1793G>A) AAG570AAT (1796G>T) AAT572GCT (1800A>G 1801A>C) AAT573AGT (1804A>G) AAT573_GTG574insTGCAGC (1805_1806insTGCAGC) GTG574TAC (1806G>T 1807T>A 1808G>C) CAG575CTT (1810A>T 1811G>T) ACT577CCA (1815A>C 1817T>A) ACT578AAT (1819C>A) CAT579AAG (1821C>A 1823T>G) GAT580GAA (1826T>A) TAC581TTG (1828A>T 1829C>G) CAT582del (1830_1832delCAT) GCA583TCA (1833G>T) GTT584AAA (1836G>A 1837T>A 1838T>A) TTT585CCC (1839T>C 1840T>C 1841T>C) GAC586AAG (1842G>A 1844C>G) ACA587GCT (1845A>G 1847A>T) CAG589GAT (1851C>G 1853G>T) AGC590AAC (1855G>A) TCC591_GGA592del (1857_1862delTCCGGA) GAT593AAT (1863G>A) CCA595CCC (1871A>C) AAA597AAT (1877A>T) GCA598GCT (1880A>T) ATT600ATC (1886T>C) CTT602TTG (1890C>T 1892T>G) CTG603CTT (1895G>T) AAG609AAA (1913G>A) GAC611GAT (1919C>T) CTT613TTA (1923C>T 1925T>A) AGT616GGC (1932A>G 1934T>C) CCG617CCA (1937G>A) GGC619GGT (1943C>T) AAA620AAC (1946A>C) GTG621TTG (1947G>T) ATT622ATA (1952T>A) CCA624CCC (1958A>C) CAG626CAA (1964G>A) ATC628ATT (1970C>T) AAT629AAC (1973T>C) AAC630AAT (1976C>T) AAA631TCA (1977A>T 1978A>C) ACA632CAG (1980A>C 1981C>A 1982A>G) CCA633CCT (1985A>T) GAG636GAC (1994G>C) TAC637TAT (1997C>T) CCA638CCG (2000A>G) TCC639TCT (2003C>T) AGC640TCT (2004A>T 2005G>C 2006C>T) ATT641CTG (2007A>C 2009T>G) CCT642CCA (2012T>A) GCA643TGT (2013G>T 2014C>G 2015A>T) GAT644GAA (2018T>A) AAT647GAA (2025A>G 2027T>A) ACA648ACT (2030A>T) CTG649TTG (2031C>T) CGA650AGG (2034C>A 2036A>G) AAC651AAA (2039C>A) AAA653AAG (2045A>G) AGA654CGT (2046A>C 2048A>T) GCA655GCT (2051A>T) GTG656GTC (2054G>C) ATT659ATC (2063T>C) CCT660CCA (2066T>A) ATT661ATA (2069T>A) CAT663CAC (2075T>C) CGA664AGG (2076C>A 2078A>G) GCA666GCT (2084A>T) AGC670AGT (2096C>T) GAT672GAC (2102T>C) ATC673ATA (2105C>A) AAC675AAT (2111C>T) AAT676AAC (2114T>C) AGG677AGA (2117G>A) ACC678ACT (2120C>T) TTA681CTT (2127T>C 2129A>T) TGT683TGC (2135T>C) TCC684AAC (2136T>A 2137C>A) TCA686AGC (2142T>A 2143C>G 2144A>C) AGG690AAA (2155G>A 2156G>A) AGT692AGC (2162T>C) GTT703GTC (2195T>C) TCT705TCA (2201T>A) GGA706GGT (2204A>T) GTA707GTT (2207A>T) ATT709ATA (2213T>A) GGC711GGT (2219C>T) TGT712TGC (2222T>C) GGC713GGA (2225C>A) GGC714GGT (2228C>T) GGA716GGC (2234A>C) TCA718TCC (2240A>C) CAA719CAG (2243A>G) TTT724TTC (2258T>C) CTC725TTG (2259C>T 2261C>G) ACT727ACA (2267T>A) CTT728TTG (2268C>T 2270T>G) GGC729GGT (2273C>T) GAC730GAT (2276C>T) TCT731TCA (2279T>A) GAC733GAT (2285C>T) TGC735TGT (2291C>T) ACA736ACT (2294A>T) GTG737GTT (2297G>T) GTT738GTA (2300T>A) GTG739GTA (2303G>A) CCA740CCC (2306A>C) CTC744CTT (2318C>T) GAT747GAC (2327T>C) GTG749GTA (2333G>A) TTG752CTC (2340T>C 2342G>C) TGT753CAT (2343T>C 2344G>A) AAG754AGA (2347A>G 2348G>A) CTA755TTG (2349C>T 2351A>G) GAA758GAG (2360A>G) CAC759CAT (2363C>T) ATT760ATC (2366T>C) GAA764GAG (2378A>G) CCA770CCT (2396A>T) GGA771GGC (2399A>C) TTC772TTT (2402C>T) GTT774ATT (2406G>A) ATC776ATA (2414C>A) GAC779GAT (2423C>T) ACT781ACC (2429T>C) AAA782AAG (2432A>G) GGT786GGC (2444T>C) GCC790GCA (2456C>A) TAT791TAC (2459T>C) TTG792CTA (2460T>C 2462G>A) TTC793TTT (2465C>T) GAA799GAG (2483A>G) ATT802ATA (2492T>A) GGA805GGT (2501A>T) GAC806GAT (2504C>T) TCG807TCT (2507G>T) CGG808AGG (2508C>A) AGT810AGC (2516T>C) GTA811GTG (2519A>G) TAT812TAC (2522T>C) GAG814GAA (2528G>A) TCC815TCT (2531C>T) GCA819GCG (2543A>G) GCC827GCT (2567C>T) GTC828GTT (2570C>T) GCT829GCA (2573T>A) TAT830TAC (2576T>C) TAT831TAC (2579T>C) AAC833AAT (2585C>T) TGT835TGC (2591T>C) GGA836GGT (2594A>T) TAC838TAT (2600C>T) CTA839TTA (2601C>T) ACA842ACT (2612A>T) GTT846GTC (2624T>C) CGC847CGT (2627C>T) TTG849TTA (2633G>A) AAT851AAC (2639T>C) AAG852AAA (2642G>A) CTA853CTT (2645A>T) GGT861GGA (2669T>A) CTC863TTG (2673C>T 2675C>G) ATT865ATC (2681T>C) ACC866ACT (2684C>T) GCC868GCT (2690C>T) AAT870CAT (2694A>C) GCT871GCC (2699T>C) CTA872TTA (2700C>T) TTG880TTA (2726G>A) GTG881GTT (2729G>T) CCC882CCT (2732C>T) AAG886AAA (2744G>A) CAA891TTA (2757C>T 2758A>T) ATA893ATT (2765A>T) GGG894GGA (2768G>A) CAC895CAT (2771C>T) GCC897TCC (2775G>T) TAC900TAT (2786C>T) GGG902GGT (2792G>T) TGT903TGC (2795T>C) GGG905GGT (2801G>T) CTT906TTA (2802C>T 2804T>A) ACT907ACA (2807T>A) CCG909CCC (2813G>C) AGA910AAG (2815G>A 2816A>G) GTC911GTA (2819C>A) TTG914CTC (2826T>C 2828G>C) GAC916GAT (2834C>T) ACA919ACG (2843A>G) CAC921CAT (2849C>T) TCA923TCT (2855A>T) AGG925AGA (2861G>A) GTG926GTT (2864G>T) ACT929ACC (2873T>C) CTC931CTG (2879C>G) TCC932TCT (2882C>T) AGA933CGT (2883A>C 2885A>T) GCT934GCA (2888T>A) GTG935GTT (2891G>T) TTT940TTC (2906T>C) ACA943ACT (2915A>T) GGC944GGT (2918C>T) CCA945CCC (2921A>C) TCT948TCA (2930T>A) GAC952GAT (2942C>T) GAG955GAA (2951G>A) GCA962GCC (2972A>C) TTT963TTC (2975T>C) ACT966GTC (2982A>G 2983C>T 2984T>C) TAC967TAT (2987C>T) GAG970GAA (2996G>A) ACA972ACT (3002A>T) CCC984CCA (3038C>A) GCT985ACT (3039G>A) GCT989GCA (3053T>A) CCA990CCT (3056A>T) TTG991GTT (3057T>G 3059G>T) ACT992ACA (3062T>A) CAC993CAT (3065C>T) TTT994TTC (3068T>C) GTG996GTA (3074G>A) TCA997GCA (3075T>G) AAC998AAT (3080C>T) GGC999GGA (3083C>A) TTG1002TTA (3092G>A) GAA1003GAG (3095A>G) AAG1004AAA (3098G>A) TCA1007TCT (3107A>T) GCG1008GCT (3110G>T) CTT1009TTG (3111C>T 3113T>G) GCA1014GCT (3128A>T) AGA1015AGG (3131A>G) GAG1016GAA (3134G>A) TTA1017ATT (3135T>A 3137A>T) GAT1019GAC (3143T>C) AAA1020AAG (3146A>G) CAC1021CAT (3149C>T) GGA1023GGC (3155A>C) TAT1024CAC (3156T>C 3158T>C) AAT1026AAC (3164T>C) GAA1031GAG (3179A>G) AAT1032AAC (3182T>C) CCA1033CCT (3185A>T) GTG1035GTC (3191G>C) CAG1039CAA (3203G>A) GCC1043GCG (3215C>G) GAT1045GAC (3221T>C) GAA1046GAG (3224A>G) CTT1048CTC (3230T>C) TTC1049TTT (3233C>T) GCA1051GCT (3239A>T) ATA1053ATT (3245A>T) CTT1057TTG (3255C>T 3257T>G) TCT1058TCC (3260T>C) ATT1059ATA (3263T>A) CCG1062CCT (3272G>T) GCC1064GCA (3278C>A) TTA1066CTC (3282T>C 3284A>C) CGA1067AGA (3285C>A) GTG1070TTG (3294G>T) CTA1071CTT (3299A>T) GAT1077GAC (3317T>C) ATC1078ATT (3320C>T) TTG1079CTC (3321T>C 3323G>C) TTT1080TTC (3326T>C) CAC1084CAT (3338C>T) GTC1086GCG (3343T>C 3344C>G) TTA1089TTG (3353A>G) GAC1092GAT (3362C>T) CCA1093CCT (3365A>T) GTG1094GTT (3368G>T) GAT1095GAC (3371T>C) TTC1096TTT (3374C>T) GAG1097GAA (3377G>A) CCA1098GAA (3378C>G 3379C>A) AGA1099AAG (3382G>A 3383A>G) ACA1100ACC (3386A>C) GAA1102GAG (3392A>G) ATA1103ATC (3395A>C) GTT1108GTG (3410T>G) AAT1110AAC (3416T>C) ACA1111ACT (3419A>T) TAC1112TAT (3422C>T) TTA1113CTT (3423T>C 3425A>T) CCA1116CCC (3434A>C) GCT1118GCC (3440T>C) AAC1119AAT (3443C>T) TTG1120CTT (3444T>C 3446G>T) GCT1123GCG (3455T>G) GCT1124GCA (3458T>A) AGC1125AGT (3461C>T) TCT1128TCA (3470T>A) CCT1129CCC (3473T>C) GAT1130GAC (3476T>C) TTC1131TTT (3479C>T) GCT1133TCT (3483G>T) AAC1134AAT (3488C>T) AAA1135AAG (3491A>G) ATT1136ATC (3494T>C) TCC1137TCA (3497C>A) CTG1138TTA (3498C>T 3500G>A) AAA1141AAG (3509A>G) GTC1145GTG (3521C>G) AAG1146AAA (3524G>A) TTA1151CTT (3537T>C 3539A>T) GGT1152GGA (3542T>A) GTC1154ATC (3546G>A) AAG1155AAA (3551G>A) AAG1157AAA (3557G>A) GGC1159GGT (3563C>T) ATT1162ATA (3572T>A) GCA1163GCT (3575A>T) TTC1165TTT (3581C>T) GTG1170GTC (3596G>C) GGG1174GGT (3608G>T) ACC1175ACT (3611C>T) AGA1178AGG (3620A>G) CTC1180TTA (3624C>T 3626C>A) AGA1181AGG (3629A>G) AAG1182AAA (3632G>A) AGA1184CGG (3636A>C 3638A>G) TTT1187TTC (3647T>C) CAA1188CAG (3650A>G) CAT1191CAC (3659T>C) ATT1192ATA (3662T>A) ACA1198ACC (3680A>C) AAT1202GAT (3690A>G) CTG1203CTC (3695G>C) AAC1204AAT (3698C>T) CAA1205AAA (3699C>A) GTT1207GTC (3707T>C) CAA1209GAT (3711C>G 3713A>T) GGT1210GGC (3716T>C) ACA1216ACC (3734A>C) GCT1217GCC (3737T>C) CAG1218CAA (3740G>A) GAT1221GAC (3749T>C) ACA1223ACT (3755A>T) GAC1226GAT (3764C>T) CAA1227CAG (3767A>G) GGT1231GGA (3779T>A) AAG1240AAA (3806G>A) TTC1243TTT (3815C>T) TTC1244TTT (3818C>T) AAT1245AAC (3821T>C) ATC1246ATT (3824C>T) CCT1247CCA (3827T>A) GCC1248GCT (3830C>T) GAC1249GAT (3833C>T) ATC1250GTC (3834A>G) GGA1253GGC (3845A>C) AAA1258AAG (3860A>G) TTG1259CTG (3861T>C) AAC1260AAT (3866C>T) GCC1261GCA (3869C>A) TTT1264TTC (3878T>C) GGC1266GGA (3884C>A) TTG1268CTC (3888T>C 3890G>C) TCC1269TCA (3893C>A) ATT1270ATA (3896T>A) AGG1272AGA (3902G>A) TTG1273CTT (3903T>C 3905G>T) CCA1278CCC (3920A>C) ACT1279ACA (3923T>A) GAT1281GAC (3929T>C) GCC1282GCT (3932C>T) ACA1284ACT (3938A>T) GAA1285GAG (3941A>G) TCA1287TCG (3947A>G) ATA1288ATT (3950A>T) TAT1290TAC (3956T>C) GCT1292GCC (3962T>C) TAC1295TTC (3970A>T) CTT1297ATT (3975C>A) GAT1298GAC (3980T>C) TCT1299AAC (3981T>A 3982C>A 3983T>C) ACA1300ACT (3986A>T) GTC1301GTT (3989C>T) CAG1303CAA (3995G>A) GTT1304GTG (3998T>G) GCT1306GCC (4004T>C) GGA1307GGT (4007A>T) GAT1308GAC (4010T>C) GAT1309GAC (4013T>C) GTC1316GTG (4034C>G) CAA1317AGT (4035C>A 4036A>G 4037A>T) AAA1319AAG (4043A>G) CCC1320AAA (4044C>A 4045C>A 4046C>A) TCT1321TCA (4049T>A) TTT1322TTC (4052T>C) AAA1323AGG (4054A>G 4055A>G) AAA1324AAG (4058A>G) CTA1325TTA (4059C>T) CAG1326CAA (4064G>A) AAC1327AAT (4067C>T) AAG1328CTA (4068A>C 4069A>T 4070G>A) CTT1329CTA (4073T>A) ACC1332ACT (4082C>T) AAG1334AAA (4088G>A) ACA1335ACG (4091A>G) CTA1336CTG (4094A>G) TTT1337TAC (4096T>A 4097T>C) GGT1343GGG (4115T>G) TAT1345TAC (4121T>C) TTC1348TTT (4130C>T) ACT1354ACA (4148T>A) CCT1355CCA (4151T>A) GGT1356GGG (4154T>G) ATC1358ATA (4160C>A) AAC1361AAT (4169C>T) CCT1362CCA (4172T>A) TTG1363CTT (4173T>C 4175G>T) GCT1367GCC (4187T>C) TCC1368TCA (4190C>A) TTG1371CTG (4197T>C) GAG1373GAA (4205G>A) GCA1374GCC (4208A>C) ATC1375ATT (4211C>T) TTA1378CTG (4218T>C 4220A>G) ACT1380ACA (4226T>A) GCT1381GCA (4229T>A) TCA1384TCT (4238A>T) GCC1386GCA (4244C>A) AAA1390AAG (4256A>G) GAT1397GAC (4277T>C) GAG1398CAA (4278G>C 4280G>A) CAC1400CAT (4286C>T) AAT1401GAC (4287A>G 4289T>C) TTA1403CTA (4293T>C) ACA1404ACC (4298A>C) CCA1405CCC (4301A>C) CAC1411CAT (4319C>T) CTT1413CTA (4325T>A) GTT1415GTG (4331T>G) CGG1416AGA (4332C>A 4334G>A) TTG1418CTT (4338T>C 4340G>T) AAG1420AAA (4346G>A) TTA1421CTC (4347T>C 4349A>C) CAC1422CAT (4352C>T) GGA1424GGC (4358A>C) GAA1425GAG (4361A>G) GCA1426GCC (4364A>C) AGA1428CGT (4368A>C 4370A>T) GGT1430GGG (4376T>G) GAA1431GAG (4379A>G) AAG1432AAA (4382G>A) AGC1433AGT (4385C>T) CCT1434CCA (4388T>A) AAA1436AGA (4393A>G) GCA1437TCA (4395G>T) ACA1438ACC (4400A>C) TGA1440TAA (4405G>A)
1235100%139786.6%235 (100%)203 (86.4%)0/0/0/01
Protein mutations:
Q11L (4463A>T 4464A>G) H14K (4471C>A 4473C>A) P17H (4481C>A 4482A>C) L19I (4486C>A 4488C>T) S20N (4490G>A 4491T>C) V21T (4492G>A 4493T>C) T24I (4502C>T) Q62A (4615C>G 4616A>C 4617A>T) H77L (4660C>T 4661A>T 4662T>G) L91P (4703T>C 4704A>T) V112T (4765G>A 4766T>C 4767C>A) H114N (4771C>A 4773T>C) E129A (4817A>C 4818G>T) I130L (4819A>C 4821T>A) V140E (4850T>A 4851C>G) K144V (4861A>G 4862A>T) E145Q (4864G>C) I148T (4874T>C 4875C>A) F151Y (4883T>A) N153D (4888A>G 4890C>T) E156A (4898A>C) T160S (4909A>T) E168K (4933G>A) D172E (4947C>A) S175G (4954T>G 4955C>G) V179E (4967T>A) A192S (5005G>A 5006C>G 5007A>T) T194V (5011A>G 5012C>T 5013A>T) A203G (5039C>G 5040A>T) A206Q (5047G>C 5048C>A 5049T>A) H221S (5092C>T 5093A>C 5094C>A) N233D (5128A>G)
Codon mutations:
CTG6TTG (4447C>T) ATT7ATC (4452T>C) CAA11CTG (4463A>T 4464A>G) TTG12TTA (4467G>A) CAC14AAA (4471C>A 4473C>A) TTC15TTT (4476C>T) GAG16GAA (4479G>A) CCA17CAC (4481C>A 4482A>C) AAA18AAG (4485A>G) CTC19ATT (4486C>A 4488C>T) AGT20AAC (4490G>A 4491T>C) GTT21ACT (4492G>A 4493T>C) ACC24ATC (4502C>T) ATA25ATT (4506A>T) GCA31GCT (4524A>T) GGC32GGA (4527C>A) ACT37ACA (4542T>A) TTA38TTG (4545A>G) GCT45GCA (4566T>A) TGC57TGT (4602C>T) TAT58TAC (4605T>C) CAA62GCT (4615C>G 4616A>C 4617A>T) AAC63AAT (4620C>T) TTA70CTT (4639T>C 4641A>T) TGC72TGT (4647C>T) CCC74CCA (4653C>A) CAT77TTG (4660C>T 4661A>T 4662T>G) GAT79GAC (4668T>C) GTC81GTT (4674C>T) GAT82GAC (4677T>C) TAT84TAC (4683T>C) TTG86CTC (4687T>C 4689G>C) CTA87TTA (4690C>T) CTA91CCT (4703T>C 4704A>T) TTG95CTA (4714T>C 4716G>A) GCT96GCC (4719T>C) ATC97ATT (4722C>T) CAA103CAG (4740A>G) ACA105ACT (4746A>T) GAG108GAA (4755G>A) AGA109AGG (4758A>G) CTT110TTG (4759C>T 4761T>G) GTC112ACA (4765G>A 4766T>C 4767C>A) CCA113CCC (4770A>C) CAT114AAC (4771C>A 4773T>C) ACT116ACA (4779T>A) ACT120ACA (4791T>A) CAT121CAC (4794T>C) AGA122CGA (4795A>C) GGA124GGC (4803A>C) AAG125AAA (4806G>A) TCA126TCC (4809A>C) GAG129GCT (4817A>C 4818G>T) ATT130CTA (4819A>C 4821T>A) TTG131CTA (4822T>C 4824G>A) AAA133AAG (4830A>G) CTG134TTA (4831C>T 4833G>A) GAC136GAT (4839C>T) AAT138AAC (4845T>C) ATA139ATT (4848A>T) GTC140GAG (4850T>A 4851C>G) GTT142GTC (4857T>C) AAG143AAA (4860G>A) AAA144GTA (4861A>G 4862A>T) GAA145CAA (4864G>C) ATC148ACA (4874T>C 4875C>A) GTT149GTA (4878T>A) TTC151TAC (4883T>A) AAC153GAT (4888A>G 4890C>T) TTT155TTC (4896T>C) GAA156GCA (4898A>C) GTT157GTG (4902T>G) ACT160TCT (4909A>T) GAG161GAA (4914G>A) CAT162CAC (4917T>C) ATC163ATT (4920C>T) GCC165GCT (4926C>T) TCT166TCA (4929T>A) GAA168AAA (4933G>A) GTC170GTT (4941C>T) GAC172GAA (4947C>A) GTT174GTA (4953T>A) TCT175GGT (4954T>G 4955C>G) GAC176GAT (4959C>T) GTG178GTT (4965G>T) GTG179GAG (4967T>A) ACC180ACT (4971C>T) ACT181ACA (4974T>A) TCA183TCT (4980A>T) GAG184GAA (4983G>A) GCA187GCT (4992A>T) GGA188GGT (4995A>T) CTT189CTC (4998T>C) GCA192AGT (5005G>A 5006C>G 5007A>T) ACA194GTT (5011A>G 5012C>T 5013A>T) TGC198TGT (5025C>T) ACA199ACC (5028A>C) TTG201CTT (5032T>C 5034G>T) GCC202GCT (5037C>T) GCA203GGT (5039C>G 5040A>T) GCT206CAA (5047G>C 5048C>A 5049T>A) GCT210GCC (5061T>C) AAG211AAA (5064G>A) ACT212ACC (5067T>C) ATC214ATT (5073C>T) TCT215TCA (5076T>A) CTG216CTC (5079G>C) ACC220ACT (5091C>T) CAC221TCA (5092C>T 5093A>C 5094C>A) AAA222AAG (5097A>G) ACC224ACA (5103C>A) GGG226GGT (5109G>T) AAC233GAC (5128A>G)
1124100%83493.1%124 (100%)115 (92.7%)0/0/0/01
Protein mutations:
F97I (5405T>A) T100N (5415C>A) S105H (5429T>C 5430C>A) N114Q (5456A>C 5458C>A) N115T (5460A>C 5461T>A) T116G (5462A>G 5463C>G 5464A>T) P118S (5468C>T) L119V (5471T>G) S120P (5474T>C)
Codon mutations:
CTA4CTG (5128A>G) GAC9GAT (5143C>T) CTC10CTT (5146C>T) ACA13ACG (5155A>G) TAC14TAT (5158C>T) GCC18GCT (5170C>T) ATT19ATA (5173T>A) GCT20GCC (5176T>C) TTC21TTT (5179C>T) TTG22CTA (5180T>C 5182G>A) TTG23CTG (5183T>C) AAT31AAC (5209T>C) AGC32AGT (5212C>T) CAC33CAT (5215C>T) TAC34TAT (5218C>T) CCT36CCA (5224T>A) GCT38GCA (5230T>A) GGA39GGT (5233A>T) GAC40GAT (5236C>T) AAC41AAT (5239C>T) CGT44AGA (5246C>A 5248T>A) TTG45CTA (5249T>C 5251G>A) CCT46CCC (5254T>C) GGC49GGT (5263C>T) CAA50CAG (5266A>G) GGC54GGA (5278C>A) ACC55ACT (5281C>T) AAA56AAG (5284A>G) ATA58ATT (5290A>T) TCC59TCT (5293C>T) TAT60TAC (5296T>C) CCA62CCG (5302A>G) CAA63CAG (5305A>G) CAG64CAA (5308G>A) CAG65CAA (5311G>A) TCA66TCC (5314A>C) CAT69CAC (5323T>C) TCT70TCA (5326T>A) AAA73AAG (5335A>G) TTA74CTT (5336T>C 5338A>T) CTC83CTT (5365C>T) ACG84ACA (5368G>A) TTG85CTG (5369T>C) TTT97ATT (5405T>A) AGT98AGC (5410T>C) ACT100AAT (5415C>A) TCT105CAT (5429T>C 5430C>A) TAT107TAC (5437T>C) TCA111TCT (5449A>T) AAC114CAA (5456A>C 5458C>A) AAT115ACA (5460A>C 5461T>A) ACA116GGT (5462A>G 5463C>G 5464A>T) CCA118TCA (5468C>T) TTG119GTG (5471T>G) TCA120CCA (5474T>C) GGC121GGT (5479C>T)
185100%45277.8%85 (100%)67 (78.8%)0/0/0/01
Protein mutations:
S9L (5365C>T) R10H (5368G>A 5369T>C) V24A (5410T>C) L26I (5415C>A) L31I (5430C>A) I33T (5437T>C) Q37L (5449A>T) T40K (5458C>A) I41Q (5460A>C 5461T>A 5462A>G) H42V (5463C>G 5464A>T) H44Q (5471T>G) A47V (5479C>T) S51G (5490A>G) E60P (5517G>C 5518A>C 5519G>A) K81Q (5580A>C) F82L (5585T>G) E83* (5586G>T 5587A>G) *85H (5592T>C 5594G>T)
Codon mutations:
TCA9TTA (5365C>T) CGT10CAC (5368G>A 5369T>C) GCT22GCA (5405T>A) GTC24GCC (5410T>C) CTA26ATA (5415C>A) ATT30ATC (5429T>C) CTT31ATT (5430C>A) ATA33ACA (5437T>C) CAG37CTG (5449A>T) CCA39CCC (5456A>C) ACA40AAA (5458C>A) ATA41CAG (5460A>C 5461T>A 5462A>G) CAC42GTC (5463C>G 5464A>T) AAC43AAT (5468C>T) CAT44CAG (5471T>G) TGT45TGC (5474T>C) GCC47GTC (5479C>T) AGT51GGT (5490A>G) GCT52GCA (5495T>A) GCA53GCC (5498A>C) GTC55GTT (5504C>T) GAG60CCA (5517G>C 5518A>C 5519G>A) CCA63CCC (5528A>C) GTG65GTT (5534G>T) ATA69ATC (5546A>C) AAA81CAA (5580A>C) TTT82TTG (5585T>G) GAA83TGA (5586G>T 5587A>G) TAG85CAT (5592T>C 5594G>T)
1238100%147894.4%238 (100%)220 (92.4%)0/0/0/01
Protein mutations:
P2E (5636C>G 5637C>A 5638T>A) D3N (5639G>A) T4Q (5642A>C 5643C>A) T5P (5645A>C 5647A>T) P6T (5648C>A 5650T>A) V7A (5652T>C) A8S (5654G>T) A9N (5657G>A 5658C>A) T10P (5660A>C 5662T>A) S12D (5666A>G 5667G>A) K18A (5684A>G 5685A>C 5686A>T) D19Q (5687G>C 5689T>A) K23Q (5699A>C 5701A>G) A24S (5702G>A 5703C>G 5704T>C) S26A (5708T>G 5710T>C) V43I (5759G>A) V133I (6029G>A) I143V (6059A>G 6061T>G)
Codon mutations:
CCT2GAA (5636C>G 5637C>A 5638T>A) GAC3AAC (5639G>A) ACA4CAA (5642A>C 5643C>A) ACA5CCT (5645A>C 5647A>T) CCT6ACA (5648C>A 5650T>A) GTT7GCT (5652T>C) GCT8TCT (5654G>T) GCC9AAC (5657G>A 5658C>A) ACT10CCA (5660A>C 5662T>A) AGT12GAT (5666A>G 5667G>A) CCC15CCA (5677C>A) ACA16ACT (5680A>T) GCC17GCT (5683C>T) AAA18GCT (5684A>G 5685A>C 5686A>T) GAT19CAA (5687G>C 5689T>A) AAA23CAG (5699A>C 5701A>G) GCT24AGC (5702G>A 5703C>G 5704T>C) CCT25CCA (5707T>A) TCT26GCC (5708T>G 5710T>C) CCC31CCT (5725C>T) AGT36TCC (5738A>T 5739G>C 5740T>C) CTC37CTA (5743C>A) AAA42AAG (5758A>G) GTC43ATC (5759G>A) AAG44AAA (5764G>A) TAT45TAC (5767T>C) GTC46GTG (5770C>G) TCC47TCA (5773C>A) ACC48ACT (5776C>T) GTG49GTC (5779G>C) ACC50ACT (5782C>T) TCC51TCA (5785C>A) GTG52GTT (5788G>T) ACA54ACG (5794A>G) CCA55CCT (5797A>T) GAA59GAG (5809A>G) CTA61CTT (5815A>T) AAA63AAG (5821A>G) TTC65TTT (5827C>T) ACC66ACT (5830C>T) GCT67GCC (5833T>C) GGC69GGT (5839C>T) CTT70TTA (5840C>T 5842T>A) GCC71GCA (5845C>A) ACT75ACC (5857T>C) GGT76GGA (5860T>A) CCG77CCT (5863G>T) GAT81GAC (5875T>C) CTA82CTC (5878A>C) GCA85GCT (5887A>T) CAG90CAA (5902G>A) TCT92TCA (5908T>A) TCG94TCT (5914G>T) CAG96CAA (5920G>A) CTG97CTT (5923G>T) ATT98ATA (5926T>A) GGA99GGT (5929A>T) GCT100GCC (5932T>C) ACC101ACA (5935C>A) CCT102CCA (5938T>A) GCA106GCT (5950A>T) CTA107TTG (5951C>T 5953A>G) TCA108TCT (5956A>T) CGC109AGA (5957C>A 5959C>A) CGA110CGT (5962A>T) GCC111GCA (5965C>A) GCT114GCA (5974T>A) CGA118CGT (5986A>T) ATA121ATC (5995A>C) ACC122ACA (5998C>A) AGG124AGA (6004G>A) TTT126TTC (6010T>C) TAC129TAT (6019C>T) GCC131GCA (6025C>A) GTT133ATT (6029G>A) CTT138CTG (6046T>G) CTC139TTA (6047C>T 6049C>A) AAC142AAT (6058C>T) ATT143GTG (6059A>G 6061T>G) CCA145CCT (6067A>T) GCA146GCC (6070A>C) AAT147AAC (6073T>C) GCC149GCA (6079C>A) CTT151TTG (6083C>T 6085T>G) GGT152GGC (6088T>C) TAC153TAT (6091C>T) CAA154CAG (6094A>G) ACA157ACC (6103A>C) AAA158AAG (6106A>G) GCA161GCT (6115A>T) TTC165TTT (6127C>T) ACC169ACA (6139C>A) AAC170AAT (6142C>T) CCT171CCA (6145T>A) GCC172GCT (6148C>T) AGC173AGT (6151C>T) CTG174CTA (6154G>A) GCT177GCA (6163T>A) GGT179GGC (6169T>C) CTT180CTA (6172T>A) CCA184CCC (6184A>C) GAA188GAG (6196A>G) CTA189CTT (6199A>T) TCC193TCG (6211C>G) GTA194GTT (6214A>T) AAG196AAA (6220G>A) TAC197TAT (6223C>T) TTG200CTT (6230T>C 6232G>T) GCT201GCC (6235T>C) AGG202CGC (6236A>C 6238G>C) CAA203CAG (6241A>G) AAG204AAA (6244G>A) ATC205ATA (6247C>A) ACA207ACT (6253A>T) AAT209AAC (6259T>C) TAT210TAC (6262T>C) ATT211ATC (6265T>C) ACA213ACC (6271A>C) GGA215GGT (6277A>T) GTC217GTT (6283C>T) GGA220GGT (6292A>T) GGA223GGC (6301A>C) GGA224GGC (6304A>C) GCT225GCC (6307T>C) ACC227ACT (6313C>T) GCG230GCA (6322G>A) ATA231ATT (6325A>T) GAC232GAT (6328C>T) CCC234CCT (6334C>T)
Proteins
11440100%904390.4%1437 (99.7%)1288 (89.3%)2/3/0/01
Protein mutations:
I58V (258A>G 260T>A) D140N (504G>A 506T>C) Q166H (584A>C) R184K (637G>A) E222D (752A>C) I230V (774A>G) H232Q (782T>G) K239R (801A>C 802A>G) R286Q (943G>A) V341I (1107G>A) T346A (1122A>G) Q350E (1134C>G) T414A (1326A>G) A418E (1339C>A 1340T>A) S424C (1356A>T 1358C>T) N425K (1361T>A) Q438N (1398C>A 1400A>T) K442Q (1410A>C) T444A (1416A>G) I445V (1419A>G) S446T (1422T>A 1424C>A) E451K (1437G>A) Q452E (1440C>G 1442G>A) R453A (1443A>G 1444G>C 1445A>G) E454D (1448A>C) P455Q (1450C>A 1451T>G) E456H (1452G>C 1454A>T) I457V (1455A>G 1457A>G) T458E (1458A>G 1459C>A 1460T>G) E461H (1467G>C 1469G>C) E463D (1475G>C) T466F (1482A>T 1483C>T) R467K (1486G>A 1487G>A) P468S (1488C>T) Q469T (1491C>A 1492A>C 1493A>T) C472P (1500T>C 1501G>C) V473H (1503G>C 1504T>A 1505T>C) T474R (1506A>C 1507C>G 1508T>G) N475S (1510A>G 1511T>C) N477E (1515A>G 1517T>A) V480I (1524G>A 1526A>C) K481N (1529A>C) L485I (1539C>A) S486E (1542T>G 1543C>A 1544T>G) A487I (1545G>A 1546C>T 1547A>T) L488N (1548C>A 1549T>A) D489E (1553T>G) E490D (1556A>T) Q491V (1557C>G 1558A>T 1559G>A) Q493E (1563C>G) C494S (1566T>A) S496G (1572T>G 1573C>G 1574T>C) S497T (1575T>A) S498N (1579G>A 1580C>T) S499E (1581A>G 1582G>A 1583T>A) H500T (1584C>A 1585A>C 1586T>A) I501L (1587A>T 1589A>G) P502L (1591C>T 1592C>T) C503N (1593T>A 1594G>A) T511S (1617A>T 1619T>A) D512S (1620G>T 1621A>C) D513A (1624A>C 1625C>T) D514E (1628C>A) N515H (1629A>C) A516V (1633C>T 1634T>G) A517Q (1635G>C 1636C>A 1637G>A) I519V (1641A>G) H520Q (1646T>A) E528N (1668G>A 1670A>C) I530E (1674A>G 1675T>A) I531A (1677A>G 1678T>C 1679A>G) Q534I (1686C>A 1687A>T) A537P (1695G>C 1697A>T) L538A (1698T>G 1699T>C 1700G>A) P539H (1702C>A 1703A>T) H540V (1704C>G 1705A>T 1706C>T) Y546L (1722T>C 1723A>T) M553T (1744T>C 1745G>T) N560D (1764A>G 1766C>T) I562V (1770A>G 1772T>G) E564K (1776G>A) S568Q (1788T>C 1789C>A) K570N (1796G>T) N572A (1800A>G 1801A>C) N573S (1804A>G) N573_V574insCS (1805_1806insTGCAGC) V574Y (1806G>T 1807T>A 1808G>C) Q575L (1810A>T 1811G>T) T577P (1815A>C 1817T>A) T578N (1819C>A) H579K (1821C>A 1823T>G) D580E (1826T>A) Y581L (1828A>T 1829C>G) H582del (1830_1832delCAT) A583S (1833G>T) V584K (1836G>A 1837T>A 1838T>A) F585P (1839T>C 1840T>C 1841T>C) D586K (1842G>A 1844C>G) T587A (1845A>G 1847A>T) Q589D (1851C>G 1853G>T) S590N (1855G>A) S591_G592del (1857_1862delTCCGGA) D593N (1863G>A) K597N (1877A>T) S616G (1932A>G 1934T>C) K620N (1946A>C) V621L (1947G>T) K631S (1977A>T 1978A>C) T632Q (1980A>C 1981C>A 1982A>G) E636D (1994G>C) I641L (2007A>C 2009T>G) A643C (2013G>T 2014C>G 2015A>T) D644E (2018T>A) N647E (2025A>G 2027T>A) N651K (2039C>A) S684N (2136T>A 2137C>A) R690K (2155G>A 2156G>A) C753H (2343T>C 2344G>A) K754R (2347A>G 2348G>A) V774I (2406G>A) N870H (2694A>C) Q891L (2757C>T 2758A>T) A897S (2775G>T) R910K (2815G>A 2816A>G) T966V (2982A>G 2983C>T 2984T>C) A985T (3039G>A) L991V (3057T>G 3059G>T) S997A (3075T>G) L1017I (3135T>A 3137A>T) Y1024H (3156T>C 3158T>C) V1070L (3294G>T) V1086A (3343T>C 3344C>G) P1098E (3378C>G 3379C>A) R1099K (3382G>A 3383A>G) A1133S (3483G>T) V1154I (3546G>A) N1202D (3690A>G) Q1205K (3699C>A) Q1209D (3711C>G 3713A>T) I1250V (3834A>G) Y1295F (3970A>T) L1297I (3975C>A) S1299N (3981T>A 3982C>A 3983T>C) Q1317S (4035C>A 4036A>G 4037A>T) P1320K (4044C>A 4045C>A 4046C>A) K1323R (4054A>G 4055A>G) K1328L (4068A>C 4069A>T 4070G>A) F1337Y (4096T>A 4097T>C) E1398Q (4278G>C 4280G>A) N1401D (4287A>G 4289T>C) K1436R (4393A>G) A1437S (4395G>T)
Codon mutations:
AAT6AAC (104T>C) TTG8TTA (110G>A) AGA12AGG (122A>G) CAG17CAA (137G>A) TCC18TCT (140C>T) GCC24GCT (158C>T) TAT25TAC (161T>C) CGA29AGA (171C>A) GTA31GTG (179A>G) CTT32CTC (182T>C) AAA33AAG (185A>G) TCT35TCC (191T>C) AAT38AAC (200T>C) TAC41TAT (209C>T) GAT45GAC (221T>C) CTT54TTA (246C>T 248T>A) ATT58GTA (258A>G 260T>A) CAC66CAT (284C>T) ACA67ACT (287A>T) GCC69GCG (293C>G) GCC71GCT (299C>T) GTA73GTT (305A>T) GTC74GTG (308C>G) CGT77AGA (315C>A 317T>A) CTT79CTA (323T>A) CAT84CAC (338T>C) CCT87CCC (347T>C) AAA88AAG (350A>G) GAT89GAC (353T>C) GAA90GAG (356A>G) GTA92GTT (362A>T) ACT93ACC (365T>C) ATC95ATT (371C>T) CGT99AGA (381C>A 383T>A) AAG101AAA (389G>A) CGT103AGA (393C>A 395T>A) AGA106CGA (402A>C) GTG110GTA (416G>A) GTC114GTT (428C>T) GTC116GTT (434C>T) CAT118CAC (440T>C) AAC119AAT (443C>T) ATT120ATA (446T>A) CCA122CCC (452A>C) AAA123AAG (455A>G) GAC124GAT (458C>T) GAA130GAG (476A>G) GAG131GAA (479G>A) TCA134TCT (488A>T) ACC135ACT (491C>T) AGC136AGT (494C>T) TTT137TTC (497T>C) GTT139GTG (503T>G) GAT140AAC (504G>A 506T>C) ACG141ACC (509G>C) AGA142AGG (512A>G) GCA144GCT (518A>T) ATT146ATC (524T>C) TCA147TCC (527A>C) CAC151CAT (539C>T) TTT152TTC (542T>C) CCT155CCA (551T>A) ACT159ACC (563T>C) TTG161CTC (567T>C 569G>C) CAA166CAC (584A>C) AAC167AAT (587C>T) TTG171CTG (597T>C) GTT175GTC (611T>C) GTA176GTT (614A>T) CTA177TTA (615C>T) GTG179GTT (623G>T) GCT181GCC (629T>C) ATA182ATC (632A>C) AGA184AAA (637G>A) CAG185CAA (641G>A) CTA188TTA (648C>T) TTC189TTT (653C>T) CCT190CCA (656T>A) ATT192ATA (662T>A) AAC196AAT (674C>T) GGC201GGT (689C>T) CCA206CCT (704A>T) GGA207GGT (707A>T) TCA208TCT (710A>T) CAC209CAT (713C>T) GGT211GGA (719T>A) TAT214TAC (728T>C) TTC215TTT (731C>T) CAC216CAT (734C>T) AAA217AAG (737A>G) ACC220ACA (746C>A) CTA221TTA (747C>T) GAA222GAC (752A>C) ATT230GTT (774A>G) GGA231GGC (779A>C) CAT232CAG (782T>G) GAT233GAC (785T>C) CCA234CCC (788A>C) TTG235TTA (791G>A) GGT237GGA (797T>A) TTA238CTC (798T>C 800A>C) AAA239CGA (801A>C 802A>G) ATT242ATA (812T>A) ACG243ACC (815G>C) CTT250TTA (834C>T 836T>A) GGT251GGA (839T>A) CAC254CAT (848C>T) AAC262AAT (872C>T) GAG264GAA (878G>A) ACG265ACA (881G>A) CCG266CCT (884G>T) CTA267TTA (885C>T) AAG273AAA (905G>A) AGT275AGC (911T>C) ACA278ACC (920A>C) TTC279TTT (923C>T) CCA280CCT (926A>T) AAT281AAC (929T>C) ATA282ATC (932A>C) CGA286CAA (943G>A) CAC287CAT (947C>T) GTC288GTT (950C>T) AAA292AAG (962A>G) CCT293CCC (965T>C) CCT295CCA (971T>A) TCA297TCC (977A>C) GCC299GCA (983C>A) ATA300ATT (986A>T) TAC303TAT (995C>T) GTG306GTC (1004G>C) TCA308TCT (1010A>T) GTA309GTC (1013A>C) AAA311AAG (1019A>G) GTT312GTG (1022T>G) ACG313ACA (1025G>A) ATA317ATC (1037A>C) GCC319GCG (1043C>G) AAG320AAA (1046G>A) GTT321GTA (1049T>A) AGA322AGG (1052A>G) CTG324CTT (1058G>T) ATT325ATA (1061T>A) TCC326TCT (1064C>T) ACT327ACA (1067T>A) GAG329GAA (1073G>A) CTA330CTT (1076A>T) CTC338CTT (1100C>T) ACG339ACA (1103G>A) CAC340CAT (1106C>T) GTT341ATT (1107G>A) GTA342GTC (1112A>C) ACA346GCA (1122A>G) GTG348GTC (1130G>C) CAA350GAA (1134C>G) CTG351CTA (1139G>A) TCA352AGC (1140T>A 1141C>G 1142A>C) TCT353TCA (1145T>A) AAT355AAC (1151T>C) GAT356GAC (1154T>C) AAC359AAT (1163C>T) TCC363TCA (1175C>A) TTC365TTT (1181C>T) CTG369CTT (1193G>T) CAC375CAT (1211C>T) TTC384TTT (1238C>T) AAG387AAA (1247G>A) GAC389GAT (1253C>T) CTG393CTT (1265G>T) CTC394TTA (1266C>T 1268C>A) ACA395ACT (1271A>T) GAT401GAC (1289T>C) TTT402TTC (1292T>C) TCC403TCT (1295C>T) TAT404TAC (1298T>C) ACT405ACC (1301T>C) AAG407AAA (1307G>A) CTT411TTA (1317C>T 1319T>A) GTA412GTT (1322A>T) ACT414GCT (1326A>G) GCT418GAA (1339C>A 1340T>A) ATA419ATT (1343A>T) GGA420GGC (1346A>C) CAA421CAG (1349A>G) ATA423ATC (1355A>C) AGC424TGT (1356A>T 1358C>T) AAT425AAA (1361T>A) GCA426GCT (1364A>T) GCT427GCG (1367T>G) TAT430TAC (1376T>C) AGG434AGA (1388G>A) CAG435CAA (1391G>A) CTG436TTG (1392C>T) ACT437ACC (1397T>C) CAA438AAT (1398C>A 1400A>T) TTG439TTA (1403G>A) AAA442CAA (1410A>C) GGT443GGC (1415T>C) ACA444GCA (1416A>G) ATA445GTA (1419A>G) TCC446ACA (1422T>A 1424C>A) GCA448GCT (1430A>T) TTT450TTC (1436T>C) GAA451AAA (1437G>A) CAG452GAA (1440C>G 1442G>A) AGA453GCG (1443A>G 1444G>C 1445A>G) GAA454GAC (1448A>C) CCT455CAG (1450C>A 1451T>G) GAA456CAT (1452G>C 1454A>T) ATA457GTG (1455A>G 1457A>G) ACT458GAG (1458A>G 1459C>A 1460T>G) GAG461CAC (1467G>C 1469G>C) GAG463GAC (1475G>C) GAA465GAG (1481A>G) ACT466TTT (1482A>T 1483C>T) AGG467AAA (1486G>A 1487G>A) CCC468TCC (1488C>T) CAA469ACT (1491C>A 1492A>C 1493A>T) GTG470GTT (1496G>T) TGC472CCC (1500T>C 1501G>C) GTT473CAC (1503G>C 1504T>A 1505T>C) ACT474CGG (1506A>C 1507C>G 1508T>G) AAT475AGC (1510A>G 1511T>C) AAT477GAA (1515A>G 1517T>A) GCA479GCC (1523A>C) GTA480ATC (1524G>A 1526A>C) AAA481AAC (1529A>C) TTA483CTT (1533T>C 1535A>T) GGT484GGC (1538T>C) CTT485ATT (1539C>A) TCT486GAG (1542T>G 1543C>A 1544T>G) GCA487ATT (1545G>A 1546C>T 1547A>T) CTT488AAT (1548C>A 1549T>A) GAT489GAG (1553T>G) GAA490GAT (1556A>T) CAG491GTA (1557C>G 1558A>T 1559G>A) CAA493GAA (1563C>G) TGT494AGT (1566T>A) TCA495TCC (1571A>C) TCT496GGC (1572T>G 1573C>G 1574T>C) TCT497ACT (1575T>A) AGC498AAT (1579G>A 1580C>T) AGT499GAA (1581A>G 1582G>A 1583T>A) CAT500ACA (1584C>A 1585A>C 1586T>A) ATA501TTG (1587A>T 1589A>G) CCC502CTT (1591C>T 1592C>T) TGC503AAC (1593T>A 1594G>A) TCC507TCT (1607C>T) ACT511TCA (1617A>T 1619T>A) GAT512TCT (1620G>T 1621A>C) GAC513GCT (1624A>C 1625C>T) GAC514GAA (1628C>A) AAT515CAT (1629A>C) GCT516GTG (1633C>T 1634T>G) GCG517CAA (1635G>C 1636C>A 1637G>A) GCC518GCT (1640C>T) ATT519GTT (1641A>G) CAT520CAA (1646T>A) GAA523GAG (1655A>G) CTA525TTA (1659C>T) TTG526CTC (1662T>C 1664G>C) GAA528AAC (1668G>A 1670A>C) CCG529CCC (1673G>C) ATA530GAA (1674A>G 1675T>A) ATA531GCG (1677A>G 1678T>C 1679A>G) GCT532GCA (1682T>A) CCT533CCA (1685T>A) CAA534ATA (1686C>A 1687A>T) CTC535TTG (1689C>T 1691C>G) CCA536CCC (1694A>C) GCA537CCT (1695G>C 1697A>T) TTG538GCA (1698T>G 1699T>C 1700G>A) CCA539CAT (1702C>A 1703A>T) CAC540GTT (1704C>G 1705A>T 1706C>T) AAG541AAA (1709G>A) GCC544GCT (1718C>T) AGT545AGC (1721T>C) TAT546CTT (1722T>C 1723A>T) GCT547GCA (1727T>A) TCA548TCT (1730A>T) TCA551TCC (1739A>C) TCC552AGC (1740T>A 1741C>G) ATG553ACT (1744T>C 1745G>T) AAG554AAA (1748G>A) GAG557GAA (1757G>A) ATT558ATC (1760T>C) GAG559GAA (1763G>A) AAC560GAT (1764A>G 1766C>T) ATT562GTG (1770A>G 1772T>G) GAG564AAG (1776G>A) CTT565CTG (1781T>G) ATC567ATA (1787C>A) TCA568CAA (1788T>C 1789C>A) CGG569AGA (1791C>A 1793G>A) AAG570AAT (1796G>T) AAT572GCT (1800A>G 1801A>C) AAT573AGT (1804A>G) AAT573_GTG574insTGCAGC (1805_1806insTGCAGC) GTG574TAC (1806G>T 1807T>A 1808G>C) CAG575CTT (1810A>T 1811G>T) ACT577CCA (1815A>C 1817T>A) ACT578AAT (1819C>A) CAT579AAG (1821C>A 1823T>G) GAT580GAA (1826T>A) TAC581TTG (1828A>T 1829C>G) CAT582del (1830_1832delCAT) GCA583TCA (1833G>T) GTT584AAA (1836G>A 1837T>A 1838T>A) TTT585CCC (1839T>C 1840T>C 1841T>C) GAC586AAG (1842G>A 1844C>G) ACA587GCT (1845A>G 1847A>T) CAG589GAT (1851C>G 1853G>T) AGC590AAC (1855G>A) TCC591_GGA592del (1857_1862delTCCGGA) GAT593AAT (1863G>A) CCA595CCC (1871A>C) AAA597AAT (1877A>T) GCA598GCT (1880A>T) ATT600ATC (1886T>C) CTT602TTG (1890C>T 1892T>G) CTG603CTT (1895G>T) AAG609AAA (1913G>A) GAC611GAT (1919C>T) CTT613TTA (1923C>T 1925T>A) AGT616GGC (1932A>G 1934T>C) CCG617CCA (1937G>A) GGC619GGT (1943C>T) AAA620AAC (1946A>C) GTG621TTG (1947G>T) ATT622ATA (1952T>A) CCA624CCC (1958A>C) CAG626CAA (1964G>A) ATC628ATT (1970C>T) AAT629AAC (1973T>C) AAC630AAT (1976C>T) AAA631TCA (1977A>T 1978A>C) ACA632CAG (1980A>C 1981C>A 1982A>G) CCA633CCT (1985A>T) GAG636GAC (1994G>C) TAC637TAT (1997C>T) CCA638CCG (2000A>G) TCC639TCT (2003C>T) AGC640TCT (2004A>T 2005G>C 2006C>T) ATT641CTG (2007A>C 2009T>G) CCT642CCA (2012T>A) GCA643TGT (2013G>T 2014C>G 2015A>T) GAT644GAA (2018T>A) AAT647GAA (2025A>G 2027T>A) ACA648ACT (2030A>T) CTG649TTG (2031C>T) CGA650AGG (2034C>A 2036A>G) AAC651AAA (2039C>A) AAA653AAG (2045A>G) AGA654CGT (2046A>C 2048A>T) GCA655GCT (2051A>T) GTG656GTC (2054G>C) ATT659ATC (2063T>C) CCT660CCA (2066T>A) ATT661ATA (2069T>A) CAT663CAC (2075T>C) CGA664AGG (2076C>A 2078A>G) GCA666GCT (2084A>T) AGC670AGT (2096C>T) GAT672GAC (2102T>C) ATC673ATA (2105C>A) AAC675AAT (2111C>T) AAT676AAC (2114T>C) AGG677AGA (2117G>A) ACC678ACT (2120C>T) TTA681CTT (2127T>C 2129A>T) TGT683TGC (2135T>C) TCC684AAC (2136T>A 2137C>A) TCA686AGC (2142T>A 2143C>G 2144A>C) AGG690AAA (2155G>A 2156G>A) AGT692AGC (2162T>C) GTT703GTC (2195T>C) TCT705TCA (2201T>A) GGA706GGT (2204A>T) GTA707GTT (2207A>T) ATT709ATA (2213T>A) GGC711GGT (2219C>T) TGT712TGC (2222T>C) GGC713GGA (2225C>A) GGC714GGT (2228C>T) GGA716GGC (2234A>C) TCA718TCC (2240A>C) CAA719CAG (2243A>G) TTT724TTC (2258T>C) CTC725TTG (2259C>T 2261C>G) ACT727ACA (2267T>A) CTT728TTG (2268C>T 2270T>G) GGC729GGT (2273C>T) GAC730GAT (2276C>T) TCT731TCA (2279T>A) GAC733GAT (2285C>T) TGC735TGT (2291C>T) ACA736ACT (2294A>T) GTG737GTT (2297G>T) GTT738GTA (2300T>A) GTG739GTA (2303G>A) CCA740CCC (2306A>C) CTC744CTT (2318C>T) GAT747GAC (2327T>C) GTG749GTA (2333G>A) TTG752CTC (2340T>C 2342G>C) TGT753CAT (2343T>C 2344G>A) AAG754AGA (2347A>G 2348G>A) CTA755TTG (2349C>T 2351A>G) GAA758GAG (2360A>G) CAC759CAT (2363C>T) ATT760ATC (2366T>C) GAA764GAG (2378A>G) CCA770CCT (2396A>T) GGA771GGC (2399A>C) TTC772TTT (2402C>T) GTT774ATT (2406G>A) ATC776ATA (2414C>A) GAC779GAT (2423C>T) ACT781ACC (2429T>C) AAA782AAG (2432A>G) GGT786GGC (2444T>C) GCC790GCA (2456C>A) TAT791TAC (2459T>C) TTG792CTA (2460T>C 2462G>A) TTC793TTT (2465C>T) GAA799GAG (2483A>G) ATT802ATA (2492T>A) GGA805GGT (2501A>T) GAC806GAT (2504C>T) TCG807TCT (2507G>T) CGG808AGG (2508C>A) AGT810AGC (2516T>C) GTA811GTG (2519A>G) TAT812TAC (2522T>C) GAG814GAA (2528G>A) TCC815TCT (2531C>T) GCA819GCG (2543A>G) GCC827GCT (2567C>T) GTC828GTT (2570C>T) GCT829GCA (2573T>A) TAT830TAC (2576T>C) TAT831TAC (2579T>C) AAC833AAT (2585C>T) TGT835TGC (2591T>C) GGA836GGT (2594A>T) TAC838TAT (2600C>T) CTA839TTA (2601C>T) ACA842ACT (2612A>T) GTT846GTC (2624T>C) CGC847CGT (2627C>T) TTG849TTA (2633G>A) AAT851AAC (2639T>C) AAG852AAA (2642G>A) CTA853CTT (2645A>T) GGT861GGA (2669T>A) CTC863TTG (2673C>T 2675C>G) ATT865ATC (2681T>C) ACC866ACT (2684C>T) GCC868GCT (2690C>T) AAT870CAT (2694A>C) GCT871GCC (2699T>C) CTA872TTA (2700C>T) TTG880TTA (2726G>A) GTG881GTT (2729G>T) CCC882CCT (2732C>T) AAG886AAA (2744G>A) CAA891TTA (2757C>T 2758A>T) ATA893ATT (2765A>T) GGG894GGA (2768G>A) CAC895CAT (2771C>T) GCC897TCC (2775G>T) TAC900TAT (2786C>T) GGG902GGT (2792G>T) TGT903TGC (2795T>C) GGG905GGT (2801G>T) CTT906TTA (2802C>T 2804T>A) ACT907ACA (2807T>A) CCG909CCC (2813G>C) AGA910AAG (2815G>A 2816A>G) GTC911GTA (2819C>A) TTG914CTC (2826T>C 2828G>C) GAC916GAT (2834C>T) ACA919ACG (2843A>G) CAC921CAT (2849C>T) TCA923TCT (2855A>T) AGG925AGA (2861G>A) GTG926GTT (2864G>T) ACT929ACC (2873T>C) CTC931CTG (2879C>G) TCC932TCT (2882C>T) AGA933CGT (2883A>C 2885A>T) GCT934GCA (2888T>A) GTG935GTT (2891G>T) TTT940TTC (2906T>C) ACA943ACT (2915A>T) GGC944GGT (2918C>T) CCA945CCC (2921A>C) TCT948TCA (2930T>A) GAC952GAT (2942C>T) GAG955GAA (2951G>A) GCA962GCC (2972A>C) TTT963TTC (2975T>C) ACT966GTC (2982A>G 2983C>T 2984T>C) TAC967TAT (2987C>T) GAG970GAA (2996G>A) ACA972ACT (3002A>T) CCC984CCA (3038C>A) GCT985ACT (3039G>A) GCT989GCA (3053T>A) CCA990CCT (3056A>T) TTG991GTT (3057T>G 3059G>T) ACT992ACA (3062T>A) CAC993CAT (3065C>T) TTT994TTC (3068T>C) GTG996GTA (3074G>A) TCA997GCA (3075T>G) AAC998AAT (3080C>T) GGC999GGA (3083C>A) TTG1002TTA (3092G>A) GAA1003GAG (3095A>G) AAG1004AAA (3098G>A) TCA1007TCT (3107A>T) GCG1008GCT (3110G>T) CTT1009TTG (3111C>T 3113T>G) GCA1014GCT (3128A>T) AGA1015AGG (3131A>G) GAG1016GAA (3134G>A) TTA1017ATT (3135T>A 3137A>T) GAT1019GAC (3143T>C) AAA1020AAG (3146A>G) CAC1021CAT (3149C>T) GGA1023GGC (3155A>C) TAT1024CAC (3156T>C 3158T>C) AAT1026AAC (3164T>C) GAA1031GAG (3179A>G) AAT1032AAC (3182T>C) CCA1033CCT (3185A>T) GTG1035GTC (3191G>C) CAG1039CAA (3203G>A) GCC1043GCG (3215C>G) GAT1045GAC (3221T>C) GAA1046GAG (3224A>G) CTT1048CTC (3230T>C) TTC1049TTT (3233C>T) GCA1051GCT (3239A>T) ATA1053ATT (3245A>T) CTT1057TTG (3255C>T 3257T>G) TCT1058TCC (3260T>C) ATT1059ATA (3263T>A) CCG1062CCT (3272G>T) GCC1064GCA (3278C>A) TTA1066CTC (3282T>C 3284A>C) CGA1067AGA (3285C>A) GTG1070TTG (3294G>T) CTA1071CTT (3299A>T) GAT1077GAC (3317T>C) ATC1078ATT (3320C>T) TTG1079CTC (3321T>C 3323G>C) TTT1080TTC (3326T>C) CAC1084CAT (3338C>T) GTC1086GCG (3343T>C 3344C>G) TTA1089TTG (3353A>G) GAC1092GAT (3362C>T) CCA1093CCT (3365A>T) GTG1094GTT (3368G>T) GAT1095GAC (3371T>C) TTC1096TTT (3374C>T) GAG1097GAA (3377G>A) CCA1098GAA (3378C>G 3379C>A) AGA1099AAG (3382G>A 3383A>G) ACA1100ACC (3386A>C) GAA1102GAG (3392A>G) ATA1103ATC (3395A>C) GTT1108GTG (3410T>G) AAT1110AAC (3416T>C) ACA1111ACT (3419A>T) TAC1112TAT (3422C>T) TTA1113CTT (3423T>C 3425A>T) CCA1116CCC (3434A>C) GCT1118GCC (3440T>C) AAC1119AAT (3443C>T) TTG1120CTT (3444T>C 3446G>T) GCT1123GCG (3455T>G) GCT1124GCA (3458T>A) AGC1125AGT (3461C>T) TCT1128TCA (3470T>A) CCT1129CCC (3473T>C) GAT1130GAC (3476T>C) TTC1131TTT (3479C>T) GCT1133TCT (3483G>T) AAC1134AAT (3488C>T) AAA1135AAG (3491A>G) ATT1136ATC (3494T>C) TCC1137TCA (3497C>A) CTG1138TTA (3498C>T 3500G>A) AAA1141AAG (3509A>G) GTC1145GTG (3521C>G) AAG1146AAA (3524G>A) TTA1151CTT (3537T>C 3539A>T) GGT1152GGA (3542T>A) GTC1154ATC (3546G>A) AAG1155AAA (3551G>A) AAG1157AAA (3557G>A) GGC1159GGT (3563C>T) ATT1162ATA (3572T>A) GCA1163GCT (3575A>T) TTC1165TTT (3581C>T) GTG1170GTC (3596G>C) GGG1174GGT (3608G>T) ACC1175ACT (3611C>T) AGA1178AGG (3620A>G) CTC1180TTA (3624C>T 3626C>A) AGA1181AGG (3629A>G) AAG1182AAA (3632G>A) AGA1184CGG (3636A>C 3638A>G) TTT1187TTC (3647T>C) CAA1188CAG (3650A>G) CAT1191CAC (3659T>C) ATT1192ATA (3662T>A) ACA1198ACC (3680A>C) AAT1202GAT (3690A>G) CTG1203CTC (3695G>C) AAC1204AAT (3698C>T) CAA1205AAA (3699C>A) GTT1207GTC (3707T>C) CAA1209GAT (3711C>G 3713A>T) GGT1210GGC (3716T>C) ACA1216ACC (3734A>C) GCT1217GCC (3737T>C) CAG1218CAA (3740G>A) GAT1221GAC (3749T>C) ACA1223ACT (3755A>T) GAC1226GAT (3764C>T) CAA1227CAG (3767A>G) GGT1231GGA (3779T>A) AAG1240AAA (3806G>A) TTC1243TTT (3815C>T) TTC1244TTT (3818C>T) AAT1245AAC (3821T>C) ATC1246ATT (3824C>T) CCT1247CCA (3827T>A) GCC1248GCT (3830C>T) GAC1249GAT (3833C>T) ATC1250GTC (3834A>G) GGA1253GGC (3845A>C) AAA1258AAG (3860A>G) TTG1259CTG (3861T>C) AAC1260AAT (3866C>T) GCC1261GCA (3869C>A) TTT1264TTC (3878T>C) GGC1266GGA (3884C>A) TTG1268CTC (3888T>C 3890G>C) TCC1269TCA (3893C>A) ATT1270ATA (3896T>A) AGG1272AGA (3902G>A) TTG1273CTT (3903T>C 3905G>T) CCA1278CCC (3920A>C) ACT1279ACA (3923T>A) GAT1281GAC (3929T>C) GCC1282GCT (3932C>T) ACA1284ACT (3938A>T) GAA1285GAG (3941A>G) TCA1287TCG (3947A>G) ATA1288ATT (3950A>T) TAT1290TAC (3956T>C) GCT1292GCC (3962T>C) TAC1295TTC (3970A>T) CTT1297ATT (3975C>A) GAT1298GAC (3980T>C) TCT1299AAC (3981T>A 3982C>A 3983T>C) ACA1300ACT (3986A>T) GTC1301GTT (3989C>T) CAG1303CAA (3995G>A) GTT1304GTG (3998T>G) GCT1306GCC (4004T>C) GGA1307GGT (4007A>T) GAT1308GAC (4010T>C) GAT1309GAC (4013T>C) GTC1316GTG (4034C>G) CAA1317AGT (4035C>A 4036A>G 4037A>T) AAA1319AAG (4043A>G) CCC1320AAA (4044C>A 4045C>A 4046C>A) TCT1321TCA (4049T>A) TTT1322TTC (4052T>C) AAA1323AGG (4054A>G 4055A>G) AAA1324AAG (4058A>G) CTA1325TTA (4059C>T) CAG1326CAA (4064G>A) AAC1327AAT (4067C>T) AAG1328CTA (4068A>C 4069A>T 4070G>A) CTT1329CTA (4073T>A) ACC1332ACT (4082C>T) AAG1334AAA (4088G>A) ACA1335ACG (4091A>G) CTA1336CTG (4094A>G) TTT1337TAC (4096T>A 4097T>C) GGT1343GGG (4115T>G) TAT1345TAC (4121T>C) TTC1348TTT (4130C>T) ACT1354ACA (4148T>A) CCT1355CCA (4151T>A) GGT1356GGG (4154T>G) ATC1358ATA (4160C>A) AAC1361AAT (4169C>T) CCT1362CCA (4172T>A) TTG1363CTT (4173T>C 4175G>T) GCT1367GCC (4187T>C) TCC1368TCA (4190C>A) TTG1371CTG (4197T>C) GAG1373GAA (4205G>A) GCA1374GCC (4208A>C) ATC1375ATT (4211C>T) TTA1378CTG (4218T>C 4220A>G) ACT1380ACA (4226T>A) GCT1381GCA (4229T>A) TCA1384TCT (4238A>T) GCC1386GCA (4244C>A) AAA1390AAG (4256A>G) GAT1397GAC (4277T>C) GAG1398CAA (4278G>C 4280G>A) CAC1400CAT (4286C>T) AAT1401GAC (4287A>G 4289T>C) TTA1403CTA (4293T>C) ACA1404ACC (4298A>C) CCA1405CCC (4301A>C) CAC1411CAT (4319C>T) CTT1413CTA (4325T>A) GTT1415GTG (4331T>G) CGG1416AGA (4332C>A 4334G>A) TTG1418CTT (4338T>C 4340G>T) AAG1420AAA (4346G>A) TTA1421CTC (4347T>C 4349A>C) CAC1422CAT (4352C>T) GGA1424GGC (4358A>C) GAA1425GAG (4361A>G) GCA1426GCC (4364A>C) AGA1428CGT (4368A>C 4370A>T) GGT1430GGG (4376T>G) GAA1431GAG (4379A>G) AAG1432AAA (4382G>A) AGC1433AGT (4385C>T) CCT1434CCA (4388T>A) AAA1436AGA (4393A>G) GCA1437TCA (4395G>T) ACA1438ACC (4400A>C) TGA1440TAA (4405G>A)
1235100%139786.6%235 (100%)203 (86.4%)0/0/0/01
Protein mutations:
Q11L (4463A>T 4464A>G) H14K (4471C>A 4473C>A) P17H (4481C>A 4482A>C) L19I (4486C>A 4488C>T) S20N (4490G>A 4491T>C) V21T (4492G>A 4493T>C) T24I (4502C>T) Q62A (4615C>G 4616A>C 4617A>T) H77L (4660C>T 4661A>T 4662T>G) L91P (4703T>C 4704A>T) V112T (4765G>A 4766T>C 4767C>A) H114N (4771C>A 4773T>C) E129A (4817A>C 4818G>T) I130L (4819A>C 4821T>A) V140E (4850T>A 4851C>G) K144V (4861A>G 4862A>T) E145Q (4864G>C) I148T (4874T>C 4875C>A) F151Y (4883T>A) N153D (4888A>G 4890C>T) E156A (4898A>C) T160S (4909A>T) E168K (4933G>A) D172E (4947C>A) S175G (4954T>G 4955C>G) V179E (4967T>A) A192S (5005G>A 5006C>G 5007A>T) T194V (5011A>G 5012C>T 5013A>T) A203G (5039C>G 5040A>T) A206Q (5047G>C 5048C>A 5049T>A) H221S (5092C>T 5093A>C 5094C>A) N233D (5128A>G)
Codon mutations:
CTG6TTG (4447C>T) ATT7ATC (4452T>C) CAA11CTG (4463A>T 4464A>G) TTG12TTA (4467G>A) CAC14AAA (4471C>A 4473C>A) TTC15TTT (4476C>T) GAG16GAA (4479G>A) CCA17CAC (4481C>A 4482A>C) AAA18AAG (4485A>G) CTC19ATT (4486C>A 4488C>T) AGT20AAC (4490G>A 4491T>C) GTT21ACT (4492G>A 4493T>C) ACC24ATC (4502C>T) ATA25ATT (4506A>T) GCA31GCT (4524A>T) GGC32GGA (4527C>A) ACT37ACA (4542T>A) TTA38TTG (4545A>G) GCT45GCA (4566T>A) TGC57TGT (4602C>T) TAT58TAC (4605T>C) CAA62GCT (4615C>G 4616A>C 4617A>T) AAC63AAT (4620C>T) TTA70CTT (4639T>C 4641A>T) TGC72TGT (4647C>T) CCC74CCA (4653C>A) CAT77TTG (4660C>T 4661A>T 4662T>G) GAT79GAC (4668T>C) GTC81GTT (4674C>T) GAT82GAC (4677T>C) TAT84TAC (4683T>C) TTG86CTC (4687T>C 4689G>C) CTA87TTA (4690C>T) CTA91CCT (4703T>C 4704A>T) TTG95CTA (4714T>C 4716G>A) GCT96GCC (4719T>C) ATC97ATT (4722C>T) CAA103CAG (4740A>G) ACA105ACT (4746A>T) GAG108GAA (4755G>A) AGA109AGG (4758A>G) CTT110TTG (4759C>T 4761T>G) GTC112ACA (4765G>A 4766T>C 4767C>A) CCA113CCC (4770A>C) CAT114AAC (4771C>A 4773T>C) ACT116ACA (4779T>A) ACT120ACA (4791T>A) CAT121CAC (4794T>C) AGA122CGA (4795A>C) GGA124GGC (4803A>C) AAG125AAA (4806G>A) TCA126TCC (4809A>C) GAG129GCT (4817A>C 4818G>T) ATT130CTA (4819A>C 4821T>A) TTG131CTA (4822T>C 4824G>A) AAA133AAG (4830A>G) CTG134TTA (4831C>T 4833G>A) GAC136GAT (4839C>T) AAT138AAC (4845T>C) ATA139ATT (4848A>T) GTC140GAG (4850T>A 4851C>G) GTT142GTC (4857T>C) AAG143AAA (4860G>A) AAA144GTA (4861A>G 4862A>T) GAA145CAA (4864G>C) ATC148ACA (4874T>C 4875C>A) GTT149GTA (4878T>A) TTC151TAC (4883T>A) AAC153GAT (4888A>G 4890C>T) TTT155TTC (4896T>C) GAA156GCA (4898A>C) GTT157GTG (4902T>G) ACT160TCT (4909A>T) GAG161GAA (4914G>A) CAT162CAC (4917T>C) ATC163ATT (4920C>T) GCC165GCT (4926C>T) TCT166TCA (4929T>A) GAA168AAA (4933G>A) GTC170GTT (4941C>T) GAC172GAA (4947C>A) GTT174GTA (4953T>A) TCT175GGT (4954T>G 4955C>G) GAC176GAT (4959C>T) GTG178GTT (4965G>T) GTG179GAG (4967T>A) ACC180ACT (4971C>T) ACT181ACA (4974T>A) TCA183TCT (4980A>T) GAG184GAA (4983G>A) GCA187GCT (4992A>T) GGA188GGT (4995A>T) CTT189CTC (4998T>C) GCA192AGT (5005G>A 5006C>G 5007A>T) ACA194GTT (5011A>G 5012C>T 5013A>T) TGC198TGT (5025C>T) ACA199ACC (5028A>C) TTG201CTT (5032T>C 5034G>T) GCC202GCT (5037C>T) GCA203GGT (5039C>G 5040A>T) GCT206CAA (5047G>C 5048C>A 5049T>A) GCT210GCC (5061T>C) AAG211AAA (5064G>A) ACT212ACC (5067T>C) ATC214ATT (5073C>T) TCT215TCA (5076T>A) CTG216CTC (5079G>C) ACC220ACT (5091C>T) CAC221TCA (5092C>T 5093A>C 5094C>A) AAA222AAG (5097A>G) ACC224ACA (5103C>A) GGG226GGT (5109G>T) AAC233GAC (5128A>G)
1124100%83493.1%124 (100%)115 (92.7%)0/0/0/01
Protein mutations:
F97I (5405T>A) T100N (5415C>A) S105H (5429T>C 5430C>A) N114Q (5456A>C 5458C>A) N115T (5460A>C 5461T>A) T116G (5462A>G 5463C>G 5464A>T) P118S (5468C>T) L119V (5471T>G) S120P (5474T>C)
Codon mutations:
CTA4CTG (5128A>G) GAC9GAT (5143C>T) CTC10CTT (5146C>T) ACA13ACG (5155A>G) TAC14TAT (5158C>T) GCC18GCT (5170C>T) ATT19ATA (5173T>A) GCT20GCC (5176T>C) TTC21TTT (5179C>T) TTG22CTA (5180T>C 5182G>A) TTG23CTG (5183T>C) AAT31AAC (5209T>C) AGC32AGT (5212C>T) CAC33CAT (5215C>T) TAC34TAT (5218C>T) CCT36CCA (5224T>A) GCT38GCA (5230T>A) GGA39GGT (5233A>T) GAC40GAT (5236C>T) AAC41AAT (5239C>T) CGT44AGA (5246C>A 5248T>A) TTG45CTA (5249T>C 5251G>A) CCT46CCC (5254T>C) GGC49GGT (5263C>T) CAA50CAG (5266A>G) GGC54GGA (5278C>A) ACC55ACT (5281C>T) AAA56AAG (5284A>G) ATA58ATT (5290A>T) TCC59TCT (5293C>T) TAT60TAC (5296T>C) CCA62CCG (5302A>G) CAA63CAG (5305A>G) CAG64CAA (5308G>A) CAG65CAA (5311G>A) TCA66TCC (5314A>C) CAT69CAC (5323T>C) TCT70TCA (5326T>A) AAA73AAG (5335A>G) TTA74CTT (5336T>C 5338A>T) CTC83CTT (5365C>T) ACG84ACA (5368G>A) TTG85CTG (5369T>C) TTT97ATT (5405T>A) AGT98AGC (5410T>C) ACT100AAT (5415C>A) TCT105CAT (5429T>C 5430C>A) TAT107TAC (5437T>C) TCA111TCT (5449A>T) AAC114CAA (5456A>C 5458C>A) AAT115ACA (5460A>C 5461T>A) ACA116GGT (5462A>G 5463C>G 5464A>T) CCA118TCA (5468C>T) TTG119GTG (5471T>G) TCA120CCA (5474T>C) GGC121GGT (5479C>T)
185100%45277.8%85 (100%)67 (78.8%)0/0/0/01
Protein mutations:
S9L (5365C>T) R10H (5368G>A 5369T>C) V24A (5410T>C) L26I (5415C>A) L31I (5430C>A) I33T (5437T>C) Q37L (5449A>T) T40K (5458C>A) I41Q (5460A>C 5461T>A 5462A>G) H42V (5463C>G 5464A>T) H44Q (5471T>G) A47V (5479C>T) S51G (5490A>G) E60P (5517G>C 5518A>C 5519G>A) K81Q (5580A>C) F82L (5585T>G) E83* (5586G>T 5587A>G) *85H (5592T>C 5594G>T)
Codon mutations:
TCA9TTA (5365C>T) CGT10CAC (5368G>A 5369T>C) GCT22GCA (5405T>A) GTC24GCC (5410T>C) CTA26ATA (5415C>A) ATT30ATC (5429T>C) CTT31ATT (5430C>A) ATA33ACA (5437T>C) CAG37CTG (5449A>T) CCA39CCC (5456A>C) ACA40AAA (5458C>A) ATA41CAG (5460A>C 5461T>A 5462A>G) CAC42GTC (5463C>G 5464A>T) AAC43AAT (5468C>T) CAT44CAG (5471T>G) TGT45TGC (5474T>C) GCC47GTC (5479C>T) AGT51GGT (5490A>G) GCT52GCA (5495T>A) GCA53GCC (5498A>C) GTC55GTT (5504C>T) GAG60CCA (5517G>C 5518A>C 5519G>A) CCA63CCC (5528A>C) GTG65GTT (5534G>T) ATA69ATC (5546A>C) AAA81CAA (5580A>C) TTT82TTG (5585T>G) GAA83TGA (5586G>T 5587A>G) TAG85CAT (5592T>C 5594G>T)
1238100%147894.4%238 (100%)220 (92.4%)0/0/0/01
Protein mutations:
P2E (5636C>G 5637C>A 5638T>A) D3N (5639G>A) T4Q (5642A>C 5643C>A) T5P (5645A>C 5647A>T) P6T (5648C>A 5650T>A) V7A (5652T>C) A8S (5654G>T) A9N (5657G>A 5658C>A) T10P (5660A>C 5662T>A) S12D (5666A>G 5667G>A) K18A (5684A>G 5685A>C 5686A>T) D19Q (5687G>C 5689T>A) K23Q (5699A>C 5701A>G) A24S (5702G>A 5703C>G 5704T>C) S26A (5708T>G 5710T>C) V43I (5759G>A) V133I (6029G>A) I143V (6059A>G 6061T>G)
Codon mutations:
CCT2GAA (5636C>G 5637C>A 5638T>A) GAC3AAC (5639G>A) ACA4CAA (5642A>C 5643C>A) ACA5CCT (5645A>C 5647A>T) CCT6ACA (5648C>A 5650T>A) GTT7GCT (5652T>C) GCT8TCT (5654G>T) GCC9AAC (5657G>A 5658C>A) ACT10CCA (5660A>C 5662T>A) AGT12GAT (5666A>G 5667G>A) CCC15CCA (5677C>A) ACA16ACT (5680A>T) GCC17GCT (5683C>T) AAA18GCT (5684A>G 5685A>C 5686A>T) GAT19CAA (5687G>C 5689T>A) AAA23CAG (5699A>C 5701A>G) GCT24AGC (5702G>A 5703C>G 5704T>C) CCT25CCA (5707T>A) TCT26GCC (5708T>G 5710T>C) CCC31CCT (5725C>T) AGT36TCC (5738A>T 5739G>C 5740T>C) CTC37CTA (5743C>A) AAA42AAG (5758A>G) GTC43ATC (5759G>A) AAG44AAA (5764G>A) TAT45TAC (5767T>C) GTC46GTG (5770C>G) TCC47TCA (5773C>A) ACC48ACT (5776C>T) GTG49GTC (5779G>C) ACC50ACT (5782C>T) TCC51TCA (5785C>A) GTG52GTT (5788G>T) ACA54ACG (5794A>G) CCA55CCT (5797A>T) GAA59GAG (5809A>G) CTA61CTT (5815A>T) AAA63AAG (5821A>G) TTC65TTT (5827C>T) ACC66ACT (5830C>T) GCT67GCC (5833T>C) GGC69GGT (5839C>T) CTT70TTA (5840C>T 5842T>A) GCC71GCA (5845C>A) ACT75ACC (5857T>C) GGT76GGA (5860T>A) CCG77CCT (5863G>T) GAT81GAC (5875T>C) CTA82CTC (5878A>C) GCA85GCT (5887A>T) CAG90CAA (5902G>A) TCT92TCA (5908T>A) TCG94TCT (5914G>T) CAG96CAA (5920G>A) CTG97CTT (5923G>T) ATT98ATA (5926T>A) GGA99GGT (5929A>T) GCT100GCC (5932T>C) ACC101ACA (5935C>A) CCT102CCA (5938T>A) GCA106GCT (5950A>T) CTA107TTG (5951C>T 5953A>G) TCA108TCT (5956A>T) CGC109AGA (5957C>A 5959C>A) CGA110CGT (5962A>T) GCC111GCA (5965C>A) GCT114GCA (5974T>A) CGA118CGT (5986A>T) ATA121ATC (5995A>C) ACC122ACA (5998C>A) AGG124AGA (6004G>A) TTT126TTC (6010T>C) TAC129TAT (6019C>T) GCC131GCA (6025C>A) GTT133ATT (6029G>A) CTT138CTG (6046T>G) CTC139TTA (6047C>T 6049C>A) AAC142AAT (6058C>T) ATT143GTG (6059A>G 6061T>G) CCA145CCT (6067A>T) GCA146GCC (6070A>C) AAT147AAC (6073T>C) GCC149GCA (6079C>A) CTT151TTG (6083C>T 6085T>G) GGT152GGC (6088T>C) TAC153TAT (6091C>T) CAA154CAG (6094A>G) ACA157ACC (6103A>C) AAA158AAG (6106A>G) GCA161GCT (6115A>T) TTC165TTT (6127C>T) ACC169ACA (6139C>A) AAC170AAT (6142C>T) CCT171CCA (6145T>A) GCC172GCT (6148C>T) AGC173AGT (6151C>T) CTG174CTA (6154G>A) GCT177GCA (6163T>A) GGT179GGC (6169T>C) CTT180CTA (6172T>A) CCA184CCC (6184A>C) GAA188GAG (6196A>G) CTA189CTT (6199A>T) TCC193TCG (6211C>G) GTA194GTT (6214A>T) AAG196AAA (6220G>A) TAC197TAT (6223C>T) TTG200CTT (6230T>C 6232G>T) GCT201GCC (6235T>C) AGG202CGC (6236A>C 6238G>C) CAA203CAG (6241A>G) AAG204AAA (6244G>A) ATC205ATA (6247C>A) ACA207ACT (6253A>T) AAT209AAC (6259T>C) TAT210TAC (6262T>C) ATT211ATC (6265T>C) ACA213ACC (6271A>C) GGA215GGT (6277A>T) GTC217GTT (6283C>T) GGA220GGT (6292A>T) GGA223GGC (6301A>C) GGA224GGC (6304A>C) GCT225GCC (6307T>C) ACC227ACT (6313C>T) GCG230GCA (6322G>A) ATA231ATT (6325A>T) GAC232GAT (6328C>T) CCC234CCT (6334C>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43