Genome Detective

NGS Details (SRR3458562_Metagenome_example): Canine parvovirus

Assembly

Coverage Length

5314 (1 contig(s))

Depth Of Coverage

24812.6

Number Of Reads

1232600

Reads Per Million

79532.83 rpm (after QC)

Ambiguities

Assembly Method

read mapping against reference + variant calling

Consensus Caller

Bcf Tools

Coverage Map

Map

Variant Tables

Consensus Variants

Download consensus variants (vcf)

Minority Variants

Download minority variants (vcf)

SNP Variants Table

Download SNP mutations table (csv)

Annotated Variants Table

Download annotated variants table (csv)

Assignment

Type

Canine parvovirus (Taxonomy ID: 10788)

Reference Genome

NC_001539.1

NT Identity (%)

99.304

AA Identity (%)

99.1269

Number Of Stop Codons

Number Of CDS

Alignment

Alignment Score

10441.0 (NT) + 10703.0 (AA) = 21144.0

Concordance (%)

98.8499

Alignment Method

Global, seeded, nucleotide + amino acids (AGA)

NT Alignment

Download alignment (FASTA)

Region Bam File

Download BAM file (.bam)

CDS Alignment

Download CDS alignment (FASTA)

Consensus Sequence

Download consensus sequence (FASTA) (Including IUPAC ambiguity codes)

Consensus Contigs

Download consensus contigs (FASTA)

Genome Region

Sequence starts at position 1 and ends at position 5317 relative to NC_001539.1 reference sequence.

NC_001539.1

SRR3458562_Metagenome_example-NC_001539.1-86-0

NC_001539.1

SRR3458562_Metagenome_example-NC_001539.1-86-0

ATTCTTTAGAACCAACTGACCAAGTTCACGTACGTATGACGTGATGAC--CCGCTGCGCGCGCTGCCTACGGCAGTCACACGTCATACGTACGCTCCTTGGTCAGTTGGTTCTAAAGAATGATAGGCGGTTTGTGTGTTTAAACTTGGGCGGGAAAAGGTGGCGGGCTAATTGTGGGCGTGGTTAAAGGTATAAAAGACAAACCATAGACCGTTACTGACATTCGCTTCTTGTCTTTGACAGAGTGAACCTCTCTTACTCTGACTAACCAACCATGTCTGGCAACCAGTATACTGAGGAAGTTATGGAGGGAGTAAATTGGTTAAAGAAACATGCAGAAAATGAAGCATTTTCGTTTGTTTTTAAATGTGACAACGTCCAACTAAATGGAAAGGATGTTCGCTGGAACAACTATACCAAACCAATTCAAAATGAAGAACTAACATCTTTAATTAGAGGAGCACAAACAGCAATGGATCAAACCGAAGAAGAAGAAATGGACTGGGAATCGGAAGTTGATAGTCTCGCCAAAAAGCAAGTACAAACTTTTGATGCATTAATTAAAAAATGTCTTTTTGAAGTCTTTGTTTCTAAAAATATAGAACCAAATGAATGTGTTTGGTTTATTCAACATGAATGGGGAAAAGATCAAGGCTGGCATTGTCATGTTTTACTTCATAGTAAGAACTTACAACAAGCAACTGGTAAATGGCTACGCAGACAAATGAATATGTATTGGAGTAGATGGTTGGTGACTCTTTGTTCGGTAAACTTAACACCAACTGAAAAGATTAAGCTCAGAGAAATTGCAGAAGATAGTGAATGGGTGACTATATTAACATACAGACATAAGCAAACAAAAAAAGACTATGTTAAAATGGTTCATTTTGGAAATATGATAGCATATTACTTTTTAACAAAGAAAAAAATTGTCCACATGACAAAAGAAAGTGGCTATTTTTTAAGTACTGATTCTGGTTGGAAATTTAACTTTATGAAGT

ATCAAGACAGACAAATTGTCAGCACACTTTACACTGAACAAATGAAACCAGAAACCGTTGAAACCACAGTGACGACAGCACAGGAAACAAAGCGCGGGAGAATTCAAACTAAAAAGGAAGTGTCAATCAAATGTACTTTGCGGGACTTGGTTAGTAAAAGAGTAACATCACCTGAAGACTGGATGATGTTACAACCAGATAGTTATATTGAAATGATGGCACAACCAGGAGGTGAAAATCTTTTAAAAAATACACTTGAAATTTGTACTTTGACTTTAGCAAGAACAAAAACAGCATTTGAATTAATACTTGAAAAAGCAGATAATACTAAACTAACTAACTTTGATCTTGCAAATTCTAGAACATGTCAAATTTTTAGAATGCACGGATGGAATTGGATTAAAGTTTGTCACGCTATAGCATGTGTTTTAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAAGAGACAGAATGTTGAACATTAAGTTAGTATGTAAGCTTCCAGGAGACTTTGGTTTGGTTGATAAAGAAGAATGGCCTTTAATATGTGCATGGTTAGTTAAACATGGTTATGAATCAACCATGGCTAACTATACACATCATTGGGGAAAAGTACCAGAATGGGATGAAAACTGGGCGGAGCCTAAAATACAAGAAGGTATAAATTC

ACCAGGTTGCAAAGACTTAGAGACACAAGCGGCAAGCAATCCTCAGAGTCAAGACCAAGTTCTAACTCCTCTGACTCCGGACGTAGTGGACCTTGCACTGGAACCGTGGAGTACTCCAGATACGCCTATTGCAGAAACTGCAAATCAACAATCAAACCAACTTGGCGTTACTCACAAAGACGTGCAAGCGAGTCCGACGTGGTCCGAAATAGAGGCAGACCTGAGAGCCATCTTTACTTCTGAACAATTGGAAGAAGATTTTCGAGACGACTTGGATTAAGGTACGATGGCACCTCCGGCAAAGAGAGCCAGGAGAGGTAAGGGTGTGTTAGTAAAGTGGGGGGAGGGGAAAGATTTAATAACTTAACTAAGTATGTGTTTTTTTATAGGACTTGTGCCTCCAGGTTATAAATATCTTGGGCCTGGGAACAGTCTTGACCAAGGAGAACCAACTAACCCTTCTGACGCCGCTGCAAAAGAACACGACGAAGCTTACGCTGCTTATCTTCGCTCTGGTAAAAACCCATACTTATATTTCTCGCCAGCAGATCAACGCTTTATAGATCAAACTAAGGACGCTAAAGATTGGGGGGGGAAAATAGGACATTATTTTTTTAGAGCTAAAAAGGCAATTGCTCCAGTATTAACTGATACACCAGATCATCCATCAACATCAAGACCAACAAAACCAACTAAAAGAAGTAAACCACCACCTCATATTTTCATCAATCTTGCAAAAAAAAAAAAAGCCGGTGCAGGACAAGTAAAAAGAGACAATCTTGCACCAATGAGTGATGGAGCAGTTCAACCAGACGGTGGTCAACCTGCTGTCAGAAATGAAAGAGCTACAGGATCTGGGAACGGGTCTGGAGGCGGGGGTGGTGGTGGTTCTGGGGGTGTGGGGATTTCTACGGGTACTTTCAATAATCAGACGGAATTTAAATTTTTGGAAAACGGATGGGTGGAAATCACAGCAAACTCAAGCAGACTTGTACATTTA

AATATGCCAGAAAGTGAAAATTATAGAAGAGTGGTTGTAAATAATATGGATAAAACTGCAGTTAACGGAAACATGGCTTTAGATGATATTCATGCACAAATTGTAACACCTTGGTCATTGGTTGATGCAAATGCTTGGGGAGTTTGGTTTAATCCAGGAGATTGGCAACTAATTGTTAATACTATGAGTGAGTTGCATTTAGTTAGTTTTGAACAAGAAATTTTTAATGTTGTTTTAAAGACTGTTTCAGAATCTGCTACTCAGCCACCAACTAAAGTTTATAATAATGATTTAACTGCATCATTGATGGTTGCATTAGATAGTAATAATACTATGCCATTTACTCCAGCAGCTATGAGATCTGAGACATTGGGTTTTTATCCATGGAAACCAACCATACCAACTCCATGGAGATATTATTTTCAATGGGATAGAACATTAATACCATCTCATACTGGAACTAGTGGCACACCAACAAATATATACCATGGTACAGATCCAGATGATGTTCAATTTTATACTATTGAAAATTCTGTGCCAGTACACTTACTAAGAACAGGTGATGAATTTGCTACAGGAACATTTTTTTTTGATTGTAAACCATGTAGACTAACACATACATGGCAAACAAATAGAGCATTGGGCTTACCACCATTTCTAAATTCTTTGCCTCAATCTGAAGGAGCTACTAACTTTGGTGATATAGGAGTTCAACAAGATAAAAGACGTGGTGTAACTCAAATGGGAAATACAAACTATATTACTGAAGCTACTATTATGAGACCAGCTGAGGTTGGTTATAGTGCACCATATTATTCTTTTGAGGCGTCTACACAAGGGCCATTTAAAACACCTATTGCAGCAGGACGGGGGGGAGCGCAAACATATGAAAATCAAGCAGCAGATGGTGATCCAAGATATGCATTTGGTAGACAACATGGTCAAAAAACTACCACAACAGGAGAAACACCTGAGAGATTTACATATATAGCACATCAAG

ATACAGGAAGATATCCAGAAGGAGATTGGATTCAAAATATTAACTTTAACCTTCCTGTAACGAATGATAATGTATTGCTACCAACAGATCCAATTGGAGGTAAAACAGGAATTAACTATACTAATATATTTAATACTTATGGTCCTTTAACTGCATTAAATAATGTACCACCAGTTTATCCAAATGGTCAAATTTGGGATAAAGAATTTGATACTGACTTAAAACCAAGACTTCATGTAAATGCACCATTTGTTTGTCAAAATAATTGTCCTGGTCAATTATTTGTAAAAGTTGCGCCTAATTTAACAAATGAATATGATCCTGATGCATCTGCTAATATGTCAAGAATTGTAACTTACTCAGATTTTTGGTGGAAAGGTAAATTAGTATTTAAAGCTAAACTAAGAGCCTCTCATACTTGGAATCCAATTCAACAAATGAGTATTAATGTAGATAACCAATTTAACTATGTACCAAGTAATATTGGAGGTATGAAAATTGTATATGAAAAATCTCAACTAGCACCTAGAAAATTATATTAACATACTTACTATGGTTTTTATGTTTATTACATATCAACTAGCACCTAGAAAAATTATATTAATATACTTACTATGGTTTTTATGTTTATTACATATTATTTTAAGATTAATTAAAT-ACAGCATAGAAATATTGTACTTGTATTTGATATAGGATTTAGAAG-TTTGTTAGATGGTATACAATAACTGTAAGAAATAGAAGAACATTTAGATCATAGTTAGTAGGTTTGTTAGATGGTATACAATAACTGTAAGAAATAGAAGAACATTTAGATCATAGTTAGTAGGTTTGTTATATGGTATACAATAACTGTAAGAAATAGAAGAACATTTAGATCATAGTTAGTAGTTTGTTTTATAAAATGTATTGTAAACCATTAATGTATGTTGTTATGGTGTGGGTGGTTGGTTGGTTTGCCCTTAGAATATGTTAAGGACCAAAAAAATCAATAAAAGACA

TTTAAAACTAAATGGCCTCGTATACTGTCTATAAGGTGAACTAACCTTACCATAAGTATCAATCGTTGCGCCCTAATTTAACAAATGAATATGATCCTGATGCATCTGCTAATATGTCAAGAATTGTAACTTACTCAGATTTTTGGTGGAAAGGTAAATTAGTATTTAAAGCTAAACTAAGAGCCTCTCATACTTGGAATCCAATTCAACAAATGAGTATTAATGTAGATAACCAATTTAACTATGTACCAAGTAATATTGGAGGTATGAAAATTGTATATGAAAAATCTCAACTAGCACCTAGAAAATTATATTAACATCTCTAGA

ATTCTTTAGAACCAACTGACCAAGTTCACGTACGTATGACGTGATGACGCGCGCTGCGCGCGCTGCCTGCGGCAGTCACACGTCATACGTACGCTCCTTGGTCAGTTGGTTCTAAAGAATGATAGGCGGTTTGTGTGTTTAAACTTGGGCGGGAAAAGGTGGCGGGCTAATTGTGGGCGTGGTTAAAGGTATAAAAGACAAACCATAGACCGTTACTGACATTCGCTTCTTGTCTTTGACAGAGTGAACCTCTCTTACTTTGACTAACTAACCATGTCTGGCAACCAGTATACTGAGGAAGTTATGGAGGGAGTAAATTGGTTAAAGAAACATGCAGAAAATGAAGCATTTTCGTTTGTTTTTAAATGTGACAACGTCCAACTAAATGGAAAGGATGTTCGCTGGAACAACTATACCAAACCAATTCAAAATGAAGAGCTAACATCTTTAATTAGAGGAGCACAAACAGCAATGGATCAAACCGAAGAAGAAGAAATGGACTGGGAATCGGAAGTTGACAGTCTCGCCAAAAAGCAAGTACAAACTTTTGATGCATTAATTAAAAAATGTCTTTTTGAAGTCTTTGTTTCTAAAAATATAGAACCAAATGAATGTGTTTGGTTTATTCAACATGAATGGGGAAAAGATCAAGGCTGGCATTGTCATGTTTTACTTCATAGTAAGAACTTACAACAAGCAACTGGTAAATGGCTACGCAGACAGATGAATATGTATTGGAGTAGATGGTTGGTGACTCTTTGTTCGGTAAACTTAACACCAACTGAAAAGATTAAGCTCAGAGAAATTGCAGAAGATAGTGAATGGGTGACTATATTAACATACAGACATAAGCAAACAAAAAAAGACTATGTTAAAATGGTTCATTTTGGAAATATGATAGCATATTACTTTTTAACAAAGAAAAAAATTGTCCACATGACAAAAGAAAGTGGCTATTTTTTAAGTACTGATTCTGGTTGGAAATTTAACTTTATGAAGT

ATCAAGACAGACAAATTGTCAGCACACTTTACACTGAACAAATGAAACCAGAAACCGTTGAAACCACAGTGACGACAGCACAGGAAACAAAGCGCGGGAGAATTCAAACTAAAAAGGAAGTGTCAATCAAATGTACTTTGCGGGACTTGGTTAGTAAAAGAGTAACATCACCTGAAGACTGGATGATGTTACAACCAGATAGTTATATTGAAATGATGGCACAACCAGGAGGTGAAAATCTTTTAAAAAATACACTTGAAATTTGTACTTTGACTTTAGCAAGAACAAAAACAGCATTTGAATTAATACTTGAAAAAGCAGATAATACTAAACTAACTAACTTTGATCTTGCAAATTCTAGAACATGTCAAATTTTTAGAATGCACGGATGGAATTGGATTAAAGTTTGTCACGCTATAGCATGTGTTTTAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCTGTGGGTAATGTTGGCTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAAGAGACAGAATGTTGAACATTAAGTTAGTATGTAAGCTTCCAGGAGACTTTGGTTTGGTTGATAAAGAAGAATGGCCTTTAATATGTGCATGGTTAGTTAAACATGGTTATGAATCAACCATGGCTAACTATACACATCATTGGGGAAAAGTACCAGAATGGGATGAAAACTGGGCGGAGCCTAAAATACAAGAAGGTATAAATTC

ACCAGGTTGCAAAGACTTAGAGACACAAGCGGCAAGCAATCCTCAGAGTCAAGACCAAGTTCTAACTCCTCTGACTCCGAACGTAGTGGACCTTGCACTGGAACCGTGGAGTACTCCAGATACGCCTATTGCAGAAACTGCAAATCAACAATCAAACCAACTTGGCGTTACTCACAAAGACGTGCAAGCGAGTCCGACCTGGTCCGAAATAGAGGCAGACCTGAGAGCCATCTTTACTTCTGAACAATTGGAAGAAGATTTTCGAGACGACTTGGATTAAGGTACGATGGCACCTCCGGCAAAGAGAGCCAGGAGAGGTAAGGGTGTGTTAGTAAAGTGGGGGGAAGGGAAAGATTTAATAACTTAACTAAGTATGTGTTTTCTTATAGGACTTGTGCCTCCAGGTTATAAATATCTTGGGCCTGGGAACAGTCTTGACCAAGGAGAACCAACTAACCCTTCTGACGCCGCTGCAAAAGAACACGACGAAGCTTACGCTGCTTATCTTCGCTCTGGTAAAAACCCATACTTATATTTCTCGCCAGCAGATCAACGCTTTATAGATCAAACTAAGGACGCTAAAGATTGGGGGGGGAAAATAGGACATTATTTTTTTAGAGCTAAAAAGGCAATTGCTCCAGTATTAACTGATACACCAGATCATCCATCAACATCAAGACCAACAAAACCAACTAAAAGAAGTAAACCACCACCTCATATTTTCATCAATCTTGCAAAAAAAAAAAAAGCCGGTGCAGGACAAGTAAAAAGAGACAATCTTGCACCAATGAGTGATGGAGCAGTTCAACCAGACGGTGGTCAACCTGCTGTCAGAAATGAAAGAGCTACAGGATCTGGGAACGGGTCTGGAGGCGGGGGTGGTGGTGGTTCTGGGGGTGTGGGGATTTCTACGGGTACTTTTAATAATCAGACGGAATTTAAATTTTTGGAAAACGGATGGGTGGAAATCACAGCAAACTCAAGCAGACTTGTACATTTA

AATATGCCAGAAAGTGAAAATTATAAAAGAGTGGTTGTAAATAATATGGATAAAACTGCAGTTAAAGGAAACATGGCTTTAGATGATACTCATGTACAAATTGTAACACCTTGGTCATTGGTTGATGCAAATGCTTGGGGAGTTTGGTTTAATCCAGGAGATTGGCAACTAATTGTTAATACTATGAGTGAGTTGCATTTAGTTAGTTTTGAACAAGAAATTTTTAATGTTGTTTTAAAGACTGTTTCAGAATCTGCTACTCAGCCACCAACTAAAGTTTATAATAATGATTTAACTGCATCATTGATGGTTGCATTAGATAGTAATAATACTATGCCATTTACTCCAGCAGCTATGAGATCTGAGACATTGGGTTTTTATCCATGGAAACCAACCATACCAACTCCATGGAGATATTATTTTCAATGGGATAGAACATTAATACCATCTCATACTGGAACTAGTGGCACGCCAACAAATGTATACCATGGTACAGATCCAGATGATGTTCAATTTTATACTATTGAAAATTCTGTGCCAGTACACTTACTAAGAACAGGTGATGAATTTGCTACAGGAACATTTTTTTTTGATTGTAAACCATGTAGACTAACACATACATGGCAAACAAATAGAGCATTGGGCTTACCACCATTTCTAAATTCTTTGCCTCAATCTGAAGGAGCTACTAACTTTGGTGATATAGGAGTTCAACAAGATAAAAGACGTGGTGTAACTCAAATGGGAAATACAGACTATATTACTGAAGCTACTATTATGAGACCAGCTGAGGTTGGTTATAGTGCACCATATTATTCTTTTGAGGCGTCTACACAAGGGCCATTTAAAACACCTATTGCAGCAGGACGGGGGGGAGCGCAAACAGATGAAAATCAAGCAGCAGATGGTGATCCAAGATATGCATTTGGTAGACAACATGGTCAAAAAACTACCACAACAGGAGAAACACCTGAGAGATTTACATATATAGCACATCAAG

ATACAGGAAGATATCCAGAAGGAGATTGGATTCAAAATATTAACTTTAACCTTCCTGTAACAAATGATAATGTATTGCTACCAACAGATCCAATTGGAGGTAAAACAGGAATTAACTATACTAATATATTTAATACTTATGGTCCTTTAACTGCATTAAATAATGTACCACCAGTTTATCCAAATGGTCAAATTTGGGATAAAGAATTTGATACTGACTTAAAACCAAGACTTCATGTAAATGCACCATTTGTTTGTCAAAATAATTGTCCCGGTCAATTATTTGTAAAAGTTGCGCCTAATTTAACAAATGAATATGATCCTGATGCATCTGCTAATATGTCAAGAATTGTAACTTACTCAGATTTTTGGTGGAAAGGTAAATTAGTATTTAAAGCTAAACTAAGAGCATCTCATACTTGGAATCCAATTCAACAAATGAGTATTAATGTAGATAACCAATTTAACTATGTACCAAATAATATTGGAGCTATGAAAATTGTATATGAAAAATCTCAACTAGCACCTAGAAAATTATATTAACATACTTACTATGGTTTTTATGTTTATTACATATCAACTAGCACCTAGAAAA-TTATATTAACATACTTACTATG-TTTTTATGTTTATTACATATTATTTTAAGATTAATTAAATTACAGCATAGAAATATTGTACTTATATTTGATATAGGATTTAGAAGGTTTGTTATATGGTATACAATAACTGTAAGAAATAGAAGAACATTTAGATCATAGTTAGTAGGTTTGTTAGATGGTATACAATAACTGTAAGAAATAGAAGAACATTTAGATCATAGTTAGAAGGTTTGTTATATGGTATACAATAACTGTAAGAAATAGAAGAACATTTAGATCATAGTTAGTAGTTTGTTTTATAAAATGTATTGTAAACTATTAATGTATGTTGTTATGGTGTGGGTGGTTGGTTGGTTTGCCCTTAGAATATGTTAAGGACCAAAAAAATCAATAAAAGACA

TTTAAAACTAAATGGCCTCGTATACTGTCTATAAGGTGAACTAACCTTACCATAAGTATCAATCGTT...CCCTAATTTAACAAATGAATATGATCCTGATGCATCTGCTAATATGTCAAGAATTGTAACTTACTCAGATTTTTGGTGGAAAGGTAAATTAGTATTTAAAGCTAAACTAAGAGCCTCTCATACTTGGAATCCAATTCAACAAATGAGTATTAATGTAGATAACCAATTTAACTATGTACCAAATAATATTGGAGCTATGAAAATTGTATATGAAAAATCTCAACTAGCACCTAGAAAATTATATTAACATC......

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CPVgp1

MSGNQYTEEVMEGVNWLKKHAENEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSVNLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRQIVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWIEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYESTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDQVLTPLTPDVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD*

MSGNQYTEEVMEGVNWLKKHAENEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSVNLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRQIVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWIEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYESTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDQVLTPLTPNVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD*

CPVgp2

MAPPAKRARRGKGVLVKWGEGKDLIT*LSMCFFIGLVPPGYKYLGPGNSLDQGEPTNPSDAAAKEHDEAYAAYLRSGKNPYLYFSPADQRFIDQTKDAKDWGGKIGHYFFRAKKAIAPVLTDTPDHPSTSRPTKPTKRSKPPPHIFINLAKKKKAGAGQVKRDNLAPMSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGISTGTFNNQTEFKFLENGWVEITANSSRLVHLNMPESENYRRVVVNNMDKTAVNGNMALDDIHAQIVTPWSLVDANAWGVWFNPGDWQLIVNTMSELHLVSFEQEIFNVVLKTVSESATQPPTKVYNNDLTASLMVALDSNNTMPFTPAAMRSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNIYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSAPYYSFEASTQGPFKTPIAAGRGGAQTYENQAADGDPRYAFGRQHGQKTTTTGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKTGINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPSNIGGMKIVYEKSQLAPRKLY*

MAPPAKRARRGKGVLVKWGEGKDLIT*LSMCFLIGLVPPGYKYLGPGNSLDQGEPTNPSDAAAKEHDEAYAAYLRSGKNPYLYFSPADQRFIDQTKDAKDWGGKIGHYFFRAKKAIAPVLTDTPDHPSTSRPTKPTKRSKPPPHIFINLAKKKKAGAGQVKRDNLAPMSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGISTGTFNNQTEFKFLENGWVEITANSSRLVHLNMPESENYKRVVVNNMDKTAVKGNMALDDTHVQIVTPWSLVDANAWGVWFNPGDWQLIVNTMSELHLVSFEQEIFNVVLKTVSESATQPPTKVYNNDLTASLMVALDSNNTMPFTPAAMRSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNVYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVTQMGNTDYITEATIMRPAEVGYSAPYYSFEASTQGPFKTPIAAGRGGAQTDENQAADGDPRYAFGRQHGQKTTTTGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKTGINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPNNIGAMKIVYEKSQLAPRKLY*

CPVgp5

MSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPSNIGGMKIVYEKSQLAPRKLY*

MSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPNNIGAMKIVYEKSQLAPRKLY*

Alignment Detailed Statistics


	Begin	End	Coverage	Score	Concordance	Matches	Identities	I/D/M/F^*	Stop Codons
NT	1	5317	99.8%	10441	98.5%	5312 (99.9%)	5279 (99.3%)	4/2
Mutations:	48_49insGC, 49C>G, 67A>G, 258C>T, 267C>T, 436A>G, 517T>C, 721A>G, 1534T>C, 2078G>A, 2197G>C, 2344G>A, 2381T>C, 2920C>T, 3024G>A, 3064C>A, 3087T>C, 3093C>T, 3469A>G, 3479A>G, 3752A>G, 3884T>G, 4060G>A, 4270T>C, 4408C>A, 4476G>A, 4488G>C, 4593delA, 4603T>C, 4616delG, 4656_4657insT, 4679G>A, 4701_4702insG, 4709G>T, 4822T>A, 4913C>T, 5249G>A, 5261G>C
CDS

CPVgp1	1	669	100%	4826	99.8%	669 (100%)	668 (99.9%)	0/0/0/0	1
Protein mutations:	D603N (2078G>A)
Codon mutations:	GAA55GAG (436A>G), GAT82GAC (517T>C), CAA150CAG (721A>G), GGT421GGC (1534T>C), GAC603AAC (2078G>A), ACG642ACC (2197G>C)
CPVgp2	1	752	100%	5408	98.8%	752 (100%)	742 (98.7%)	0/0/0/0	2
Protein mutations:	F33L (2381T>C), R247K (3024G>A), N260K (3064C>A), I268T (3087T>C), A270V (3093C>T), I399V (3479A>G), N490D (3752A>G), Y534D (3884T>G), S731N (4476G>A), G735A (4488G>C)
Codon mutations:	GAG20GAA (2344G>A), TTT33CTT (2381T>C), TTC212TTT (2920C>T), AGA247AAA (3024G>A), AAC260AAA (3064C>A), ATT268ACT (3087T>C), GCA270GTA (3093C>T), ACA395ACG (3469A>G), ATA399GTA (3479A>G), AAC490GAC (3752A>G), TAT534GAT (3884T>G), ACG592ACA (4060G>A), CCT662CCC (4270T>C), GCC708GCA (4408C>A), AGT731AAT (4476G>A), GGT735GCT (4488G>C)
CPVgp5	1	68	100%	469	97.5%	68 (100%)	66 (97.1%)	0/0/0/0	1
Protein mutations:	S47N (5249G>A), G51A (5261G>C)
Codon mutations:	AGT47AAT (5249G>A), GGT51GCT (5261G>C)
Proteins

polyprotein (NP_041399.1)	1	669	100%	4826	99.8%	669 (100%)	668 (99.9%)	0/0/0/0	1
Protein mutations:	D603N (2078G>A)
Codon mutations:	GAA55GAG (436A>G), GAT82GAC (517T>C), CAA150CAG (721A>G), GGT421GGC (1534T>C), GAC603AAC (2078G>A), ACG642ACC (2197G>C)
polyprotein (NP_041400.1)	1	752	100%	5408	98.8%	752 (100%)	742 (98.7%)	0/0/0/0	2
Protein mutations:	F33L (2381T>C), R247K (3024G>A), N260K (3064C>A), I268T (3087T>C), A270V (3093C>T), I399V (3479A>G), N490D (3752A>G), Y534D (3884T>G), S731N (4476G>A), G735A (4488G>C)
Codon mutations:	GAG20GAA (2344G>A), TTT33CTT (2381T>C), TTC212TTT (2920C>T), AGA247AAA (3024G>A), AAC260AAA (3064C>A), ATT268ACT (3087T>C), GCA270GTA (3093C>T), ACA395ACG (3469A>G), ATA399GTA (3479A>G), AAC490GAC (3752A>G), TAT534GAT (3884T>G), ACG592ACA (4060G>A), CCT662CCC (4270T>C), GCC708GCA (4408C>A), AGT731AAT (4476G>A), GGT735GCT (4488G>C)
capsid protein VP1 (NP_955538.1)	1	26	100%	176	100%	26 (100%)	26 (100%)	0/0/0/0	0
Protein mutations:	none
Codon mutations:	GAG20GAA (2344G>A)
capsid protein VP2 (NP_955539.1)	1	585	100%	4247	98.7%	585 (100%)	576 (98.5%)	0/0/0/0	0
Protein mutations:	R81K (3024G>A), N94K (3064C>A), I102T (3087T>C), A104V (3093C>T), I233V (3479A>G), N324D (3752A>G), Y368D (3884T>G), S565N (4476G>A), G569A (4488G>C)
Codon mutations:	TTC46TTT (2920C>T), AGA81AAA (3024G>A), AAC94AAA (3064C>A), ATT102ACT (3087T>C), GCA104GTA (3093C>T), ACA229ACG (3469A>G), ATA233GTA (3479A>G), AAC324GAC (3752A>G), TAT368GAT (3884T>G), ACG426ACA (4060G>A), CCT496CCC (4270T>C), GCC542GCA (4408C>A), AGT565AAT (4476G>A), GGT569GCT (4488G>C)
hypothetical protein (NP_041401.1)	1	68	100%	469	97.5%	68 (100%)	66 (97.1%)	0/0/0/0	1
Protein mutations:	S47N (5249G>A), G51A (5261G>C)
Codon mutations:	AGT47AAT (5249G>A), GGT51GCT (5261G>C)

^*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43