Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Rotavirus A (segment 4)

Assembly

2360 (1 contig(s))
22188.7
478129
30851.01 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Rotavirus A (Taxonomy ID: 28875)
70.339
74.5174
1
1

Alignment

segment 4
1920.0 (NT) + 4105.0 (AA) = 6025.0
60.6015
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT2236199.9%192040.7%2360 (100%)1660 (70.3%)0/0
Mutations:
24T>A 27T>C 33A>G 34T>C 40A>G 42G>T 51T>C 52A>G 57A>G 63A>G 66C>T 78A>G 79G>T 80A>C 81G>A 82A>G 91A>G 92C>A 93T>G 96A>G 97T>A 98C>A 99A>C 102A>G 103A>C 104A>G 105T>C 108C>T 112A>G 114T>G 120T>A 135A>G 140G>T 141T>A 147T>G 153T>G 165T>C 168A>T 172A>G 174T>G 180T>C 183T>G 186G>T 187A>G 188C>T 192T>A 193G>C 198A>T 199T>G 202C>T 207T>C 210G>A 213T>G 219A>G 223A>G 226A>T 228A>G 232A>G 236C>T 243C>A 245A>G 246T>A 247T>A 258A>G 259C>T 261G>A 264T>G 270G>A 271A>G 272C>G 276T>A 279C>T 282A>G 283A>G 285T>A 288T>G 294T>G 297A>G 298A>G 300T>C 304A>T 306A>T 308A>G 309T>C 319G>T 321C>T 322A>G 323C>T 328T>C 330A>G 333C>T 336G>A 340A>G 341A>G 345T>C 346C>A 347A>C 348G>A 351T>A 356A>C 360A>G 363T>G 366C>T 369T>G 372A>G 378T>A 379A>T 380T>C 381T>A 382C>A 383A>G 384A>T 385G>A 390A>G 391T>G 393A>G 394A>T 395C>T 396G>A 399A>G 402C>G 405T>C 406A>G 408T>G 411A>T 412C>G 414A>T 415G>A 416A>C 417C>G 418C>A 420G>A 430A>G 435T>A 436G>A 438C>G 439G>A 441A>G 444A>G 447A>G 448A>G 450T>G 451G>A 452C>T 453A>T 454A>G 459A>T 460A>G 461G>A 462T>C 463A>T 464T>A 465A>T 467G>C 468A>G 469C>G 473A>G 474T>G 478C>A 489C>A 490A>G 491G>A 492T>C 493C>A 495G>C 499T>C 501A>C 506C>G 507A>G 508G>A 510T>G 516G>A 517C>T 520A>G 521A>G 522T>A 523G>A 525A>G 527A>G 529T>C 533A>T 534T>C 536C>T 540T>C 547C>G 549G>A 552A>C 555T>A 558C>T 561T>C 563G>C 567A>C 568G>A 569C>A 571C>A 572A>G 573T>A 576T>C 577T>A 578C>T 579A>T 580A>G 581C>T 582A>G 593A>C 594T>A 597T>A 601A>G 603T>G 604A>G 606G>A 608C>G 609T>G 610G>C 612T>A 614T>A 616T>A 634C>T 636T>A 642T>A 643G>C 645A>G 648G>A 651T>A 652A>G 653A>C 657T>C 660G>T 663A>G 666C>T 669T>A 672T>C 675T>C 679T>C 681A>G 687A>C 690A>C 699T>C 702A>G 708T>A 711A>G 714A>T 715T>G 717A>G 718T>G 720G>A 721T>A 723G>A 724A>T 726T>G 727G>T 729T>A 733G>T 734A>C 735T>A 736G>A 738A>T 739A>G 740T>A 743A>C 744C>A 745T>A 746A>G 747T>A 749G>A 752C>T 753T>G 756A>G 774G>A 775A>G 777A>T 780C>T 786A>G 790T>C 792G>A 822A>C 824C>T 825T>A 836A>G 837A>G 842C>A 843A>T 846T>C 847A>T 852T>A 861A>T 867G>T 868C>T 873A>C 883T>G 885A>T 891A>C 900G>A 901C>G 903A>T 906G>A 920C>A 921A>T 924T>C 926C>T 927T>G 928C>A 930T>A 933T>C 936T>A 948C>A 951A>G 957T>G 960T>G 963T>C 969G>T 975C>T 984C>T 987C>T 990T>C 996T>C 1002A>C 1004A>C 1005T>A 1014T>A 1020T>C 1022T>C 1023T>A 1024G>A 1029T>G 1031A>G 1034T>A 1050G>A 1056A>G 1059C>T 1062C>A 1065T>C 1066A>G 1068C>T 1080T>C 1089A>G 1095T>C 1096C>A 1098T>A 1101C>T 1102G>A 1107G>C 1113C>G 1119G>A 1122A>G 1128A>G 1131C>T 1138T>G 1139C>A 1140A>C 1143T>A 1150A>T 1155A>C 1158C>A 1159A>G 1160G>A 1161C>T 1164T>C 1166A>G 1167T>C 1170T>C 1171A>G 1172G>C 1173T>G 1179A>T 1181T>C 1182T>C 1194T>A 1197T>G 1198T>A 1200A>G 1202C>A 1203T>A 1212A>G 1215T>G 1216T>A 1218T>G 1221A>G 1224T>C 1225T>A 1230T>A 1233T>A 1240C>T 1248T>A 1254T>C 1257A>T 1260T>C 1262T>A 1270T>C 1272A>G 1275T>C 1279T>C 1284A>G 1299A>G 1302T>A 1315C>T 1316A>C 1317C>A 1320T>C 1322A>C 1323A>G 1324C>A 1326G>A 1335T>A 1336A>C 1338A>T 1339T>G 1342G>T 1343A>C 1344T>A 1346G>A 1348T>C 1357C>T 1359G>A 1362T>A 1365T>G 1368A>G 1369G>A 1371T>C 1377T>C 1378A>G 1379A>G 1380T>C 1383T>A 1385A>G 1386A>G 1399A>G 1401T>G 1404T>A 1408C>A 1410A>G 1416A>G 1419T>G 1428A>G 1449T>C 1452G>A 1455T>G 1458T>A 1461A>T 1462G>A 1463C>T 1464A>G 1473T>A 1476T>A 1480C>A 1488T>C 1491A>G 1499A>G 1500G>T 1504G>A 1505G>A 1506A>T 1509A>G 1510C>T 1512A>G 1524T>C 1527C>T 1528G>A 1529C>A 1530T>C 1533G>A 1536T>A 1542A>G 1545T>A 1548A>T 1549A>G 1554G>A 1563C>T 1566T>C 1572G>T 1573C>A 1575T>G 1578A>G 1582T>C 1587T>C 1593C>T 1596A>G 1602T>C 1605T>G 1608C>A 1612A>G 1614A>G 1615A>G 1621A>G 1623T>G 1624G>A 1626T>C 1629T>A 1638A>G 1647T>C 1650T>C 1653T>G 1658A>G 1659A>G 1670A>G 1671G>T 1675G>A 1676G>A 1678T>C 1680A>C 1683G>A 1684A>T 1685A>C 1686T>A 1692T>G 1697C>T 1698A>G 1699C>T 1704A>G 1707T>C 1713A>G 1716A>C 1719C>T 1722A>G 1725A>C 1731A>T 1734A>C 1735T>G 1740A>G 1741G>A 1743T>C 1744T>A 1749T>A 1755T>A 1758G>A 1761T>A 1767T>G 1768T>A 1770A>G 1779A>T 1783A>G 1785G>T 1786G>A 1789G>A 1791A>T 1795A>G 1796C>A 1802T>C 1803A>G 1804A>C 1805C>A 1806T>A 1809T>C 1810A>G 1811T>C 1812A>C 1813T>G 1814C>T 1815G>T 1816T>A 1817C>A 1818A>T 1819T>G 1820C>A 1824A>T 1825A>G 1826G>C 1827T>G 1828T>A 1830A>G 1831G>A 1833T>A 1836G>A 1837A>T 1843A>G 1844C>T 1849A>C 1850C>A 1851T>A 1854C>A 1858A>G 1860A>G 1862G>A 1866G>A 1870C>T 1875G>A 1881G>T 1882G>A 1884A>G 1887A>T 1893T>A 1896G>A 1899T>A 1908T>C 1914T>C 1926T>G 1929T>G 1930T>C 1932G>A 1935G>A 1936A>G 1938T>C 1949A>G 1953G>A 1955C>T 1956T>A 1959A>G 1960A>G 1962A>C 1963T>G 1964C>A 1965A>C 1967C>A 1972A>G 1975A>T 1980T>A 1984A>G 1986T>C 1987G>A 1989T>C 1992T>A 1998A>G 2001G>A 2004A>G 2015C>G 2016A>T 2025T>G 2028C>T 2029C>A 2031T>A 2034T>A 2038A>G 2041A>G 2042A>G 2043C>A 2049T>A 2051T>C 2052G>A 2058A>G 2061T>G 2064A>C 2066T>C 2070T>C 2075A>G 2082T>C 2085T>G 2088T>C 2091A>G 2097T>A 2100A>G 2101T>C 2112A>G 2118T>C 2119G>A 2122G>A 2125C>G 2136T>A 2139C>T 2148A>C 2149G>A 2151T>C 2154T>A 2160A>G 2166C>G 2169T>A 2175T>A 2178T>C 2184A>G 2188C>T 2190T>A 2196T>C 2197T>C 2202C>T 2205T>C 2211C>T 2214C>G 2217T>A 2222A>G 2223G>A 2224C>G 2226A>G 2241T>G 2245A>C 2247A>G 2250T>A 2251G>A 2256A>C 2258G>A 2265A>G 2270A>G 2274C>T 2278A>G 2280T>C 2283G>A 2284G>A 2292T>A 2295A>T 2298T>A 2300G>A 2304T>C 2310T>A 2317C>T 2319G>A 2322T>C 2331C>T 2334G>A 2342T>C 2344A>G 2345T>C 2350A>G
CDS
1777100%410578.6%777 (100%)579 (74.5%)0/0/0/01
Protein mutations:
T11A (40A>G 42G>T) T15A (52A>G) E24S (79G>T 80A>C 81G>A) I25V (82A>G) T28E (91A>G 92C>A 93T>G) S30N (97T>A 98C>A 99A>C) N32R (103A>C 104A>G 105T>C) I35V (112A>G 114T>G) G44V (140G>T 141T>A) I55V (172A>G 174T>G) T60V (187A>G 188C>T) E62Q (193G>C) L64V (199T>G) T72A (223A>G) T73S (226A>T 228A>G) N75D (232A>G) P76L (236C>T) D79G (245A>G 246T>A) Y80N (247T>A) T88G (271A>G 272C>G) I92V (283A>G 285T>A) N97D (298A>G 300T>C) T99S (304A>T 306A>T) D100G (308A>G 309T>C) A104S (319G>T 321C>T) T105V (322A>G 323C>T) N111G (340A>G 341A>G) Q113T (346C>A 347A>C 348G>A) N116T (356A>C) I121M (372A>G) I124S (379A>T 380T>C 381T>A) Q125S (382C>A 383A>G 384A>T) E126K (385G>A) L128V (391T>G 393A>G) T129L (394A>T 395C>T 396G>A) T133A (406A>G 408T>G) Q135D (412C>G 414A>T) D136T (415G>A 416A>C 417C>G) Q137K (418C>A 420G>A) I141V (430A>G) D142E (435T>A) V143M (436G>A 438C>G) V144M (439G>A 441A>G) T147A (448A>G 450T>G) A148I (451G>A 452C>T 453A>T) N149D (454A>G) S151D (460A>G 461G>A 462T>C) I152Y (463A>T 464T>A 465A>T) G153A (467G>C 468A>G) Q154E (469C>G) Y155W (473A>G 474T>G) P157T (478C>A) S161D (490A>G 491G>A 492T>C) P162T (493C>A 495G>C) A166G (506C>G 507A>G) V167M (508G>A 510T>G) H170Y (517C>T) N171G (520A>G 521A>G 522T>A) E172K (523G>A 525A>G) K173R (527A>G) Y175F (533A>T 534T>C) T176I (536C>T) Q180E (547C>G 549G>A) R185T (563G>C) A187K (568G>A 569C>A) H188R (571C>A 572A>G 573T>A) S190I (577T>A 578C>T 579A>T) T191V (580A>G 581C>T 582A>G) D195A (593A>C 594T>A) N198E (601A>G 603T>G) M199V (604A>G 606G>A) T200R (608C>G 609T>G) A201P (610G>C 612T>A) F202Y (614T>A) C203S (616T>A) P209S (634C>T 636T>A) E212Q (643G>C 645A>G) K215A (652A>G 653A>C) L236V (715T>G 717A>G) S237A (718T>G 720G>A) L238I (721T>A 723G>A) T239S (724A>T 726T>G) A240S (727G>T 729T>A) D242S (733G>T 734A>C 735T>A) V243I (736G>A 738A>T) I244E (739A>G 740T>A) H245P (743A>C 744C>A) Y246R (745T>A 746A>G 747T>A) R247K (749G>A) A248V (752C>T 753T>G) I256V (775A>G 777A>T) T272I (824C>T 825T>A) K276R (836A>G 837A>G) A278D (842C>A 843A>T) T280S (847A>T) S292A (883T>G 885A>T) P298A (901C>G 903A>T) T304N (920C>A 921A>T) T306M (926C>T 927T>G) Y332S (1004A>C 1005T>A) V338A (1022T>C 1023T>A) V339I (1024G>A) K341R (1031A>G) F342Y (1034T>A) I353V (1066A>G 1068C>T) V365M (1102G>A) S377D (1138T>G 1139C>A 1140A>C) T381S (1150A>T) S384D (1159A>G 1160G>A 1161C>T) N386S (1166A>G 1167T>C) S388A (1171A>G 1172G>C 1173T>G) V391A (1181T>C 1182T>C) L397M (1198T>A 1200A>G) T398K (1202C>A 1203T>A) S403T (1216T>A 1218T>G) S406T (1225T>A) F418Y (1262T>A) H436S (1315C>T 1316A>C 1317C>A) K438T (1322A>C 1323A>G) L439I (1324C>A 1326G>A) L444V (1339T>G) D445S (1342G>T 1343A>C 1344T>A) R446K (1346G>A) D454N (1369G>A 1371T>C) N457G (1378A>G 1379A>G 1380T>C) K459R (1385A>G 1386A>G) I464V (1399A>G 1401T>G) A485M (1462G>A 1463C>T 1464A>G) Q497R (1499A>G 1500G>T) G499N (1504G>A 1505G>A 1506A>T) A507N (1528G>A 1529C>A 1530T>C) M514V (1549A>G) L522M (1573C>A 1575T>G) K535E (1612A>G 1614A>G) S536G (1615A>G) I538V (1621A>G 1623T>G) D539N (1624G>A 1626T>C) K550R (1658A>G 1659A>G) K554S (1670A>G 1671G>T) G556K (1675G>A 1676G>A) N559S (1684A>T 1685A>C 1686T>A) T563M (1697C>T 1698A>G) S576A (1735T>G) G578S (1741G>A 1743T>C) S579T (1744T>A) S587T (1768T>A 1770A>G) T592A (1783A>G 1785G>T) D593N (1786G>A) V594I (1789G>A 1791A>T) T596E (1795A>G 1796C>A) I598T (1802T>C 1803A>G) T599Q (1804A>C 1805C>A 1806T>A) I601A (1810A>G 1811T>C 1812A>C) S602V (1813T>G 1814C>T 1815G>T) S603N (1816T>A 1817C>A 1818A>T) S604E (1819T>G 1820C>A) S606A (1825A>G 1826G>C 1827T>G) S607T (1828T>A 1830A>G) V608I (1831G>A 1833T>A) T610S (1837A>T) T612V (1843A>G 1844C>T) T614Q (1849A>C 1850C>A 1851T>A) R617G (1858A>G 1860A>G) R618K (1862G>A) M624I (1881G>T) A625T (1882G>A 1884A>G) T643A (1936A>G 1938T>C) K647R (1949A>G) T649I (1955C>T 1956T>A) I651V (1960A>G 1962A>C) S652D (1963T>G 1964C>A 1965A>C) P653Q (1967C>A) T655A (1972A>G) I656L (1975A>T) I659V (1984A>G 1986T>C) V660I (1987G>A 1989T>C) P669R (2015C>G 2016A>T) N677D (2038A>G) N678G (2041A>G 2042A>G 2043C>A) D680E (2049T>A) V681A (2051T>C 2052G>A) I686T (2066T>C) K689R (2075A>G) D696E (2097T>A) F698L (2101T>C) I701M (2112A>G) D704N (2119G>A) V705I (2122G>A) Q706E (2125C>G) D714N (2149G>A 2151T>C) K738R (2222A>G 2223G>A) Q739E (2224C>G 2226A>G) D748N (2251G>A) R750K (2258G>A) E754G (2270A>G) N757D (2278A>G 2280T>C) D759N (2284G>A) R764K (2300G>A)
Codon mutations:
ATT5ATA (24T>A) TAT6TAC (27T>C) CAA8CAG (33A>G) TTG9CTG (34T>C) ACG11GCT (40A>G 42G>T) TAT14TAC (51T>C) ACA15GCA (52A>G) GTA16GTG (57A>G) TTA18TTG (63A>G) TCC19TCT (66C>T) CAA23CAG (78A>G) GAG24TCA (79G>T 80A>C 81G>A) ATT25GTT (82A>G) ACT28GAG (91A>G 92C>A 93T>G) AAA29AAG (96A>G) TCA30AAC (97T>A 98C>A 99A>C) CAA31CAG (102A>G) AAT32CGC (103A>C 104A>G 105T>C) GTC33GTT (108C>T) ATT35GTG (112A>G 114T>G) CCT37CCA (120T>A) CAA42CAG (135A>G) GGT44GTA (140G>T 141T>A) GCT46GCG (147T>G) GTT48GTG (153T>G) CCT52CCC (165T>C) GGA53GGT (168A>T) ATT55GTG (172A>G 174T>G) GAT57GAC (180T>C) TCT58TCG (183T>G) ACG59ACT (186G>T) ACA60GTA (187A>G 188C>T) GTT61GTA (192T>A) GAA62CAA (193G>C) CCA63CCT (198A>T) TTG64GTG (199T>G) CTG65TTG (202C>T) GAT66GAC (207T>C) GGG67GGA (210G>A) CCT68CCG (213T>G) CAA70CAG (219A>G) ACG72GCG (223A>G) ACA73TCG (226A>T 228A>G) AAT75GAT (232A>G) CCA76CTA (236C>T) GTC78GTA (243C>A) GAT79GGA (245A>G 246T>A) TAT80AAT (247T>A) TTA83TTG (258A>G) CTG84TTA (259C>T 261G>A) GCT85GCG (264T>G) ACG87ACA (270G>A) ACA88GGA (271A>G 272C>G) CCT89CCA (276T>A) GGC90GGT (279C>T) GTA91GTG (282A>G) ATT92GTA (283A>G 285T>A) GTT93GTG (288T>G) GGT95GGG (294T>G) ACA96ACG (297A>G) AAT97GAC (298A>G 300T>C) ACA99TCT (304A>T 306A>T) GAT100GGC (308A>G 309T>C) GCC104TCT (319G>T 321C>T) ACA105GTA (322A>G 323C>T) TTA107CTG (328T>C 330A>G) ATC108ATT (333C>T) GAG109GAA (336G>A) AAT111GGT (340A>G 341A>G) GTT112GTC (345T>C) CAG113ACA (346C>A 347A>C 348G>A) TCT114TCA (351T>A) AAT116ACT (356A>C) AGA117AGG (360A>G) ACT118ACG (363T>G) TAC119TAT (366C>T) ACT120ACG (369T>G) ATA121ATG (372A>G) GGT123GGA (378T>A) ATT124TCA (379A>T 380T>C 381T>A) CAA125AGT (382C>A 383A>G 384A>T) GAA126AAA (385G>A) CAA127CAG (390A>G) TTA128GTG (391T>G 393A>G) ACG129TTA (394A>T 395C>T 396G>A) GTA130GTG (399A>G) TCC131TCG (402C>G) AAT132AAC (405T>C) ACT133GCG (406A>G 408T>G) TCA134TCT (411A>T) CAA135GAT (412C>G 414A>T) GAC136ACG (415G>A 416A>C 417C>G) CAG137AAA (418C>A 420G>A) ATT141GTT (430A>G) GAT142GAA (435T>A) GTC143ATG (436G>A 438C>G) GTA144ATG (439G>A 441A>G) AAA145AAG (444A>G) ACA146ACG (447A>G) ACT147GCG (448A>G 450T>G) GCA148ATT (451G>A 452C>T 453A>T) AAT149GAT (454A>G) GGA150GGT (459A>T) AGT151GAC (460A>G 461G>A 462T>C) ATA152TAT (463A>T 464T>A 465A>T) GGA153GCG (467G>C 468A>G) CAA154GAA (469C>G) TAT155TGG (473A>G 474T>G) CCA157ACA (478C>A) TCC160TCA (489C>A) AGT161GAC (490A>G 491G>A 492T>C) CCG162ACC (493C>A 495G>C) TTA164CTC (499T>C 501A>C) GCA166GGG (506C>G 507A>G) GTT167ATG (508G>A 510T>G) AAG169AAA (516G>A) CAT170TAT (517C>T) AAT171GGA (520A>G 521A>G 522T>A) GAA172AAG (523G>A 525A>G) AAA173AGA (527A>G) TTA174CTA (529T>C) TAT175TTC (533A>T 534T>C) ACA176ATA (536C>T) TAT177TAC (540T>C) CAG180GAA (547C>G 549G>A) ACA181ACC (552A>C) CCT182CCA (555T>A) AAC183AAT (558C>T) GCT184GCC (561T>C) AGG185ACG (563G>C) ACA186ACC (567A>C) GCA187AAA (568G>A 569C>A) CAT188AGA (571C>A 572A>G 573T>A) TAT189TAC (576T>C) TCA190ATT (577T>A 578C>T 579A>T) ACA191GTG (580A>G 581C>T 582A>G) GAT195GCA (593A>C 594T>A) TCT196TCA (597T>A) AAT198GAG (601A>G 603T>G) ATG199GTA (604A>G 606G>A) ACT200AGG (608C>G 609T>G) GCT201CCA (610G>C 612T>A) TTT202TAT (614T>A) TGT203AGT (616T>A) CCT209TCA (634C>T 636T>A) TCT211TCA (642T>A) GAA212CAG (643G>C 645A>G) GAG213GAA (648G>A) TCT214TCA (651T>A) AAA215GCA (652A>G 653A>C) TGT216TGC (657T>C) ACG217ACT (660G>T) GAA218GAG (663A>G) TAC219TAT (666C>T) ATT220ATA (669T>A) AAT221AAC (672T>C) AAT222AAC (675T>C) TTA224CTG (679T>C 681A>G) CCA226CCC (687A>C) ATA227ATC (690A>C) ACT230ACC (699T>C) AGA231AGG (702A>G) GTT233GTA (708T>A) GTA234GTG (711A>G) CCA235CCT (714A>T) TTA236GTG (715T>G 717A>G) TCG237GCA (718T>G 720G>A) TTG238ATA (721T>A 723G>A) ACT239TCG (724A>T 726T>G) GCT240TCA (727G>T 729T>A) GAT242TCA (733G>T 734A>C 735T>A) GTA243ATT (736G>A 738A>T) ATA244GAA (739A>G 740T>A) CAC245CCA (743A>C 744C>A) TAT246AGA (745T>A 746A>G 747T>A) AGA247AAA (749G>A) GCT248GTG (752C>T 753T>G) CAA249CAG (756A>G) GTG255GTA (774G>A) ATA256GTT (775A>G 777A>T) TCC257TCT (780C>T) ACA259ACG (786A>G) TTG261CTA (790T>C 792G>A) ATA271ATC (822A>C) ACT272ATA (824C>T 825T>A) AAA276AGG (836A>G 837A>G) GCA278GAT (842C>A 843A>T) AAT279AAC (846T>C) ACA280TCA (847A>T) ATT281ATA (852T>A) TCA284TCT (861A>T) GGG286GGT (867G>T) CTG287TTG (868C>T) GGA288GGC (873A>C) TCA292GCT (883T>G 885A>T) ATA294ATC (891A>C) AAG297AAA (900G>A) CCA298GCT (901C>G 903A>T) GCG299GCA (906G>A) ACA304AAT (920C>A 921A>T) TAT305TAC (924T>C) ACT306ATG (926C>T 927T>G) CGT307AGA (928C>A 930T>A) GAT308GAC (933T>C) GGT309GGA (936T>A) ACC313ACA (948C>A) GCA314GCG (951A>G) ACT316ACG (957T>G) ACT317ACG (960T>G) TGT318TGC (963T>C) GTG320GTT (969G>T) GGC322GGT (975C>T) GAC325GAT (984C>T) TTC326TTT (987C>T) AGT327AGC (990T>C) AAT329AAC (996T>C) GGA331GGC (1002A>C) TAT332TCA (1004A>C 1005T>A) ACT335ACA (1014T>A) TTT337TTC (1020T>C) GTT338GCA (1022T>C 1023T>A) GTA339ATA (1024G>A) TCT340TCG (1029T>G) AAA341AGA (1031A>G) TTT342TAT (1034T>A) GAG347GAA (1050G>A) TCA349TCG (1056A>G) TAC350TAT (1059C>T) GTC351GTA (1062C>A) TAT352TAC (1065T>C) ATC353GTT (1066A>G 1068C>T) GAT357GAC (1080T>C) CAA360CAG (1089A>G) TTT362TTC (1095T>C) CGT363AGA (1096C>A 1098T>A) AAC364AAT (1101C>T) GTG365ATG (1102G>A) GTG366GTC (1107G>C) GTC368GTG (1113C>G) TCG370TCA (1119G>A) TTA371TTG (1122A>G) GCA373GCG (1128A>G) AAC374AAT (1131C>T) TCA377GAC (1138T>G 1139C>A 1140A>C) GTT378GTA (1143T>A) ACT381TCT (1150A>T) GGA382GGC (1155A>C) GGC383GGA (1158C>A) AGC384GAT (1159A>G 1160G>A 1161C>T) TAT385TAC (1164T>C) AAT386AGC (1166A>G 1167T>C) TTT387TTC (1170T>C) AGT388GCG (1171A>G 1172G>C 1173T>G) CCA390CCT (1179A>T) GTT391GCC (1181T>C 1182T>C) CCT395CCA (1194T>A) GTT396GTG (1197T>G) TTA397ATG (1198T>A 1200A>G) ACT398AAA (1202C>A 1203T>A) GCA401GCG (1212A>G) GTT402GTG (1215T>G) TCT403ACG (1216T>A 1218T>G) TTA404TTG (1221A>G) CAT405CAC (1224T>C) TCA406ACA (1225T>A) GCT407GCA (1230T>A) GGT408GGA (1233T>A) CTA411TTA (1240C>T) ACT413ACA (1248T>A) TTT415TTC (1254T>C) ACA416ACT (1257A>T) GAT417GAC (1260T>C) TTC418TAC (1262T>A) TTA421CTG (1270T>C 1272A>G) AAT422AAC (1275T>C) TTA424CTA (1279T>C) AGA425AGG (1284A>G) CTA430CTG (1299A>G) GCT431GCA (1302T>A) CAC436TCA (1315C>T 1316A>C 1317C>A) TTT437TTC (1320T>C) AAA438ACG (1322A>C 1323A>G) CTG439ATA (1324C>A 1326G>A) ACT442ACA (1335T>A) AGA443CGT (1336A>C 1338A>T) TTA444GTA (1339T>G) GAT445TCA (1342G>T 1343A>C 1344T>A) AGA446AAA (1346G>A) TTG447CTG (1348T>C) CTG450TTA (1357C>T 1359G>A) CCT451CCA (1362T>A) GCT452GCG (1365T>G) GCA453GCG (1368A>G) GAT454AAC (1369G>A 1371T>C) AAT456AAC (1377T>C) AAT457GGC (1378A>G 1379A>G 1380T>C) GGT458GGA (1383T>A) AAA459AGG (1385A>G 1386A>G) ATT464GTG (1399A>G 1401T>G) GCT465GCA (1404T>A) CGA467AGG (1408C>A 1410A>G) TCA469TCG (1416A>G) CTT470CTG (1419T>G) TTA473TTG (1428A>G) TAT480TAC (1449T>C) CAG481CAA (1452G>A) ACT482ACG (1455T>G) CCT483CCA (1458T>A) ATA484ATT (1461A>T) GCA485ATG (1462G>A 1463C>T 1464A>G) GTT488GTA (1473T>A) ACT489ACA (1476T>A) CGA491AGA (1480C>A) GAT493GAC (1488T>C) TTA494TTG (1491A>G) CAG497CGT (1499A>G 1500G>T) GGA499AAT (1504G>A 1505G>A 1506A>T) GAA500GAG (1509A>G) CTA501TTG (1510C>T 1512A>G) TTT505TTC (1524T>C) AAC506AAT (1527C>T) GCT507AAC (1528G>A 1529C>A 1530T>C) TTG508TTA (1533G>A) TCT509TCA (1536T>A) GAA511GAG (1542A>G) ATT512ATA (1545T>A) GCA513GCT (1548A>T) ATG514GTG (1549A>G) TCG515TCA (1554G>A) ATC518ATT (1563C>T) GAT519GAC (1566T>C) GCG521GCT (1572G>T) CTT522ATG (1573C>A 1575T>G) CTA523CTG (1578A>G) TTA525CTA (1582T>C) GAT526GAC (1587T>C) TTC528TTT (1593C>T) TCA529TCG (1596A>G) TTT531TTC (1602T>C) TCT532TCG (1605T>G) GGC533GGA (1608C>A) AAA535GAG (1612A>G 1614A>G) AGT536GGT (1615A>G) ATT538GTG (1621A>G 1623T>G) GAT539AAC (1624G>A 1626T>C) GCT540GCA (1629T>A) TCA543TCG (1638A>G) ACT546ACC (1647T>C) AAT547AAC (1650T>C) GTT548GTG (1653T>G) AAA550AGG (1658A>G 1659A>G) AAG554AGT (1670A>G 1671G>T) GGA556AAA (1675G>A 1676G>A) TTA557CTC (1678T>C 1680A>C) GCG558GCA (1683G>A) AAT559TCA (1684A>T 1685A>C 1686T>A) GTT561GTG (1692T>G) ACA563ATG (1697C>T 1698A>G) CTG564TTG (1699C>T) ACA565ACG (1704A>G) GAT566GAC (1707T>C) TTA568TTG (1713A>G) TCA569TCC (1716A>C) GAC570GAT (1719C>T) GCA571GCG (1722A>G) GCA572GCC (1725A>C) TCA574TCT (1731A>T) ATA575ATC (1734A>C) TCA576GCA (1735T>G) AGA577AGG (1740A>G) GGT578AGC (1741G>A 1743T>C) TCA579ACA (1744T>A) TCT580TCA (1749T>A) CGT582CGA (1755T>A) TCG583TCA (1758G>A) ATT584ATA (1761T>A) TCT586TCG (1767T>G) TCA587ACG (1768T>A 1770A>G) GCA590GCT (1779A>T) ACG592GCT (1783A>G 1785G>T) GAT593AAT (1786G>A) GTA594ATT (1789G>A 1791A>T) ACA596GAA (1795A>G 1796C>A) ATA598ACG (1802T>C 1803A>G) ACT599CAA (1804A>C 1805C>A 1806T>A) GAT600GAC (1809T>C) ATA601GCC (1810A>G 1811T>C 1812A>C) TCG602GTT (1813T>G 1814C>T 1815G>T) TCA603AAT (1816T>A 1817C>A 1818A>T) TCA604GAA (1819T>G 1820C>A) GTA605GTT (1824A>T) AGT606GCG (1825A>G 1826G>C 1827T>G) TCA607ACG (1828T>A 1830A>G) GTT608ATA (1831G>A 1833T>A) TCG609TCA (1836G>A) ACA610TCA (1837A>T) ACG612GTG (1843A>G 1844C>T) ACT614CAA (1849A>C 1850C>A 1851T>A) ATC615ATA (1854C>A) AGA617GGG (1858A>G 1860A>G) AGA618AAA (1862G>A) TTG619TTA (1866G>A) CTA621TTA (1870C>T) AAG622AAA (1875G>A) ATG624ATT (1881G>T) GCA625ACG (1882G>A 1884A>G) ACA626ACT (1887A>T) ACT628ACA (1893T>A) GAG629GAA (1896G>A) GGT630GGA (1899T>A) TTT633TTC (1908T>C) GAT635GAC (1914T>C) GCT639GCG (1926T>G) GTT640GTG (1929T>G) TTG641CTA (1930T>C 1932G>A) AAG642AAA (1935G>A) ACT643GCC (1936A>G 1938T>C) AAA647AGA (1949A>G) TCG648TCA (1953G>A) ACT649ATA (1955C>T 1956T>A) CAA650CAG (1959A>G) ATA651GTC (1960A>G 1962A>C) TCA652GAC (1963T>G 1964C>A 1965A>C) CCA653CAA (1967C>A) ACA655GCA (1972A>G) ATA656TTA (1975A>T) CCT657CCA (1980T>A) ATT659GTC (1984A>G 1986T>C) GTT660ATC (1987G>A 1989T>C) ACT661ACA (1992T>A) GCA663GCG (1998A>G) TCG664TCA (2001G>A) GAA665GAG (2004A>G) CCA669CGT (2015C>G 2016A>T) GCT672GCG (2025T>G) TAC673TAT (2028C>T) CGT674AGA (2029C>A 2031T>A) GTT675GTA (2034T>A) AAC677GAC (2038A>G) AAC678GGA (2041A>G 2042A>G 2043C>A) GAT680GAA (2049T>A) GTG681GCA (2051T>C 2052G>A) GAA683GAG (2058A>G) GCT684GCG (2061T>G) GGA685GGC (2064A>C) ATT686ACT (2066T>C) GAT687GAC (2070T>C) AAA689AGA (2075A>G) TTT691TTC (2082T>C) GCT692GCG (2085T>G) TAT693TAC (2088T>C) AAA694AAG (2091A>G) GAT696GAA (2097T>A) ACA697ACG (2100A>G) TTT698CTT (2101T>C) ATA701ATG (2112A>G) TTT703TTC (2118T>C) GAT704AAT (2119G>A) GTA705ATA (2122G>A) CAA706GAA (2125C>G) GCT709GCA (2136T>A) GAC710GAT (2139C>T) ACA713ACC (2148A>C) GAT714AAC (2149G>A 2151T>C) TCT715TCA (2154T>A) GTA717GTG (2160A>G) TCC719TCG (2166C>G) GCT720GCA (2169T>A) ATT722ATA (2175T>A) GAT723GAC (2178T>C) AAA725AAG (2184A>G) CTT727TTA (2188C>T 2190T>A) AAT729AAC (2196T>C) TTG730CTG (2197T>C) AAC731AAT (2202C>T) GAT732GAC (2205T>C) TAC734TAT (2211C>T) GGC735GGG (2214C>G) ATT736ATA (2217T>A) AAG738AGA (2222A>G 2223G>A) CAA739GAG (2224C>G 2226A>G) CTT744CTG (2241T>G) AGA746CGG (2245A>C 2247A>G) TCT747TCA (2250T>A) GAC748AAC (2251G>A) CCA749CCC (2256A>C) AGA750AAA (2258G>A) TTA752TTG (2265A>G) GAA754GGA (2270A>G) TTC755TTT (2274C>T) AAT757GAC (2278A>G 2280T>C) CAG758CAA (2283G>A) GAC759AAC (2284G>A) CCT761CCA (2292T>A) ATA762ATT (2295A>T) ATT763ATA (2298T>A) AGA764AAA (2300G>A) AAT765AAC (2304T>C) ATT767ATA (2310T>A) CTG770TTA (2317C>T 2319G>A) ATT771ATC (2322T>C) TGC774TGT (2331C>T) AGG775AGA (2334G>A)
Proteins
1777100%410578.6%777 (100%)579 (74.5%)0/0/0/01
Protein mutations:
T11A (40A>G 42G>T) T15A (52A>G) E24S (79G>T 80A>C 81G>A) I25V (82A>G) T28E (91A>G 92C>A 93T>G) S30N (97T>A 98C>A 99A>C) N32R (103A>C 104A>G 105T>C) I35V (112A>G 114T>G) G44V (140G>T 141T>A) I55V (172A>G 174T>G) T60V (187A>G 188C>T) E62Q (193G>C) L64V (199T>G) T72A (223A>G) T73S (226A>T 228A>G) N75D (232A>G) P76L (236C>T) D79G (245A>G 246T>A) Y80N (247T>A) T88G (271A>G 272C>G) I92V (283A>G 285T>A) N97D (298A>G 300T>C) T99S (304A>T 306A>T) D100G (308A>G 309T>C) A104S (319G>T 321C>T) T105V (322A>G 323C>T) N111G (340A>G 341A>G) Q113T (346C>A 347A>C 348G>A) N116T (356A>C) I121M (372A>G) I124S (379A>T 380T>C 381T>A) Q125S (382C>A 383A>G 384A>T) E126K (385G>A) L128V (391T>G 393A>G) T129L (394A>T 395C>T 396G>A) T133A (406A>G 408T>G) Q135D (412C>G 414A>T) D136T (415G>A 416A>C 417C>G) Q137K (418C>A 420G>A) I141V (430A>G) D142E (435T>A) V143M (436G>A 438C>G) V144M (439G>A 441A>G) T147A (448A>G 450T>G) A148I (451G>A 452C>T 453A>T) N149D (454A>G) S151D (460A>G 461G>A 462T>C) I152Y (463A>T 464T>A 465A>T) G153A (467G>C 468A>G) Q154E (469C>G) Y155W (473A>G 474T>G) P157T (478C>A) S161D (490A>G 491G>A 492T>C) P162T (493C>A 495G>C) A166G (506C>G 507A>G) V167M (508G>A 510T>G) H170Y (517C>T) N171G (520A>G 521A>G 522T>A) E172K (523G>A 525A>G) K173R (527A>G) Y175F (533A>T 534T>C) T176I (536C>T) Q180E (547C>G 549G>A) R185T (563G>C) A187K (568G>A 569C>A) H188R (571C>A 572A>G 573T>A) S190I (577T>A 578C>T 579A>T) T191V (580A>G 581C>T 582A>G) D195A (593A>C 594T>A) N198E (601A>G 603T>G) M199V (604A>G 606G>A) T200R (608C>G 609T>G) A201P (610G>C 612T>A) F202Y (614T>A) C203S (616T>A) P209S (634C>T 636T>A) E212Q (643G>C 645A>G) K215A (652A>G 653A>C) L236V (715T>G 717A>G) S237A (718T>G 720G>A) L238I (721T>A 723G>A) T239S (724A>T 726T>G) A240S (727G>T 729T>A) D242S (733G>T 734A>C 735T>A) V243I (736G>A 738A>T) I244E (739A>G 740T>A) H245P (743A>C 744C>A) Y246R (745T>A 746A>G 747T>A) R247K (749G>A) A248V (752C>T 753T>G) I256V (775A>G 777A>T) T272I (824C>T 825T>A) K276R (836A>G 837A>G) A278D (842C>A 843A>T) T280S (847A>T) S292A (883T>G 885A>T) P298A (901C>G 903A>T) T304N (920C>A 921A>T) T306M (926C>T 927T>G) Y332S (1004A>C 1005T>A) V338A (1022T>C 1023T>A) V339I (1024G>A) K341R (1031A>G) F342Y (1034T>A) I353V (1066A>G 1068C>T) V365M (1102G>A) S377D (1138T>G 1139C>A 1140A>C) T381S (1150A>T) S384D (1159A>G 1160G>A 1161C>T) N386S (1166A>G 1167T>C) S388A (1171A>G 1172G>C 1173T>G) V391A (1181T>C 1182T>C) L397M (1198T>A 1200A>G) T398K (1202C>A 1203T>A) S403T (1216T>A 1218T>G) S406T (1225T>A) F418Y (1262T>A) H436S (1315C>T 1316A>C 1317C>A) K438T (1322A>C 1323A>G) L439I (1324C>A 1326G>A) L444V (1339T>G) D445S (1342G>T 1343A>C 1344T>A) R446K (1346G>A) D454N (1369G>A 1371T>C) N457G (1378A>G 1379A>G 1380T>C) K459R (1385A>G 1386A>G) I464V (1399A>G 1401T>G) A485M (1462G>A 1463C>T 1464A>G) Q497R (1499A>G 1500G>T) G499N (1504G>A 1505G>A 1506A>T) A507N (1528G>A 1529C>A 1530T>C) M514V (1549A>G) L522M (1573C>A 1575T>G) K535E (1612A>G 1614A>G) S536G (1615A>G) I538V (1621A>G 1623T>G) D539N (1624G>A 1626T>C) K550R (1658A>G 1659A>G) K554S (1670A>G 1671G>T) G556K (1675G>A 1676G>A) N559S (1684A>T 1685A>C 1686T>A) T563M (1697C>T 1698A>G) S576A (1735T>G) G578S (1741G>A 1743T>C) S579T (1744T>A) S587T (1768T>A 1770A>G) T592A (1783A>G 1785G>T) D593N (1786G>A) V594I (1789G>A 1791A>T) T596E (1795A>G 1796C>A) I598T (1802T>C 1803A>G) T599Q (1804A>C 1805C>A 1806T>A) I601A (1810A>G 1811T>C 1812A>C) S602V (1813T>G 1814C>T 1815G>T) S603N (1816T>A 1817C>A 1818A>T) S604E (1819T>G 1820C>A) S606A (1825A>G 1826G>C 1827T>G) S607T (1828T>A 1830A>G) V608I (1831G>A 1833T>A) T610S (1837A>T) T612V (1843A>G 1844C>T) T614Q (1849A>C 1850C>A 1851T>A) R617G (1858A>G 1860A>G) R618K (1862G>A) M624I (1881G>T) A625T (1882G>A 1884A>G) T643A (1936A>G 1938T>C) K647R (1949A>G) T649I (1955C>T 1956T>A) I651V (1960A>G 1962A>C) S652D (1963T>G 1964C>A 1965A>C) P653Q (1967C>A) T655A (1972A>G) I656L (1975A>T) I659V (1984A>G 1986T>C) V660I (1987G>A 1989T>C) P669R (2015C>G 2016A>T) N677D (2038A>G) N678G (2041A>G 2042A>G 2043C>A) D680E (2049T>A) V681A (2051T>C 2052G>A) I686T (2066T>C) K689R (2075A>G) D696E (2097T>A) F698L (2101T>C) I701M (2112A>G) D704N (2119G>A) V705I (2122G>A) Q706E (2125C>G) D714N (2149G>A 2151T>C) K738R (2222A>G 2223G>A) Q739E (2224C>G 2226A>G) D748N (2251G>A) R750K (2258G>A) E754G (2270A>G) N757D (2278A>G 2280T>C) D759N (2284G>A) R764K (2300G>A)
Codon mutations:
ATT5ATA (24T>A) TAT6TAC (27T>C) CAA8CAG (33A>G) TTG9CTG (34T>C) ACG11GCT (40A>G 42G>T) TAT14TAC (51T>C) ACA15GCA (52A>G) GTA16GTG (57A>G) TTA18TTG (63A>G) TCC19TCT (66C>T) CAA23CAG (78A>G) GAG24TCA (79G>T 80A>C 81G>A) ATT25GTT (82A>G) ACT28GAG (91A>G 92C>A 93T>G) AAA29AAG (96A>G) TCA30AAC (97T>A 98C>A 99A>C) CAA31CAG (102A>G) AAT32CGC (103A>C 104A>G 105T>C) GTC33GTT (108C>T) ATT35GTG (112A>G 114T>G) CCT37CCA (120T>A) CAA42CAG (135A>G) GGT44GTA (140G>T 141T>A) GCT46GCG (147T>G) GTT48GTG (153T>G) CCT52CCC (165T>C) GGA53GGT (168A>T) ATT55GTG (172A>G 174T>G) GAT57GAC (180T>C) TCT58TCG (183T>G) ACG59ACT (186G>T) ACA60GTA (187A>G 188C>T) GTT61GTA (192T>A) GAA62CAA (193G>C) CCA63CCT (198A>T) TTG64GTG (199T>G) CTG65TTG (202C>T) GAT66GAC (207T>C) GGG67GGA (210G>A) CCT68CCG (213T>G) CAA70CAG (219A>G) ACG72GCG (223A>G) ACA73TCG (226A>T 228A>G) AAT75GAT (232A>G) CCA76CTA (236C>T) GTC78GTA (243C>A) GAT79GGA (245A>G 246T>A) TAT80AAT (247T>A) TTA83TTG (258A>G) CTG84TTA (259C>T 261G>A) GCT85GCG (264T>G) ACG87ACA (270G>A) ACA88GGA (271A>G 272C>G) CCT89CCA (276T>A) GGC90GGT (279C>T) GTA91GTG (282A>G) ATT92GTA (283A>G 285T>A) GTT93GTG (288T>G) GGT95GGG (294T>G) ACA96ACG (297A>G) AAT97GAC (298A>G 300T>C) ACA99TCT (304A>T 306A>T) GAT100GGC (308A>G 309T>C) GCC104TCT (319G>T 321C>T) ACA105GTA (322A>G 323C>T) TTA107CTG (328T>C 330A>G) ATC108ATT (333C>T) GAG109GAA (336G>A) AAT111GGT (340A>G 341A>G) GTT112GTC (345T>C) CAG113ACA (346C>A 347A>C 348G>A) TCT114TCA (351T>A) AAT116ACT (356A>C) AGA117AGG (360A>G) ACT118ACG (363T>G) TAC119TAT (366C>T) ACT120ACG (369T>G) ATA121ATG (372A>G) GGT123GGA (378T>A) ATT124TCA (379A>T 380T>C 381T>A) CAA125AGT (382C>A 383A>G 384A>T) GAA126AAA (385G>A) CAA127CAG (390A>G) TTA128GTG (391T>G 393A>G) ACG129TTA (394A>T 395C>T 396G>A) GTA130GTG (399A>G) TCC131TCG (402C>G) AAT132AAC (405T>C) ACT133GCG (406A>G 408T>G) TCA134TCT (411A>T) CAA135GAT (412C>G 414A>T) GAC136ACG (415G>A 416A>C 417C>G) CAG137AAA (418C>A 420G>A) ATT141GTT (430A>G) GAT142GAA (435T>A) GTC143ATG (436G>A 438C>G) GTA144ATG (439G>A 441A>G) AAA145AAG (444A>G) ACA146ACG (447A>G) ACT147GCG (448A>G 450T>G) GCA148ATT (451G>A 452C>T 453A>T) AAT149GAT (454A>G) GGA150GGT (459A>T) AGT151GAC (460A>G 461G>A 462T>C) ATA152TAT (463A>T 464T>A 465A>T) GGA153GCG (467G>C 468A>G) CAA154GAA (469C>G) TAT155TGG (473A>G 474T>G) CCA157ACA (478C>A) TCC160TCA (489C>A) AGT161GAC (490A>G 491G>A 492T>C) CCG162ACC (493C>A 495G>C) TTA164CTC (499T>C 501A>C) GCA166GGG (506C>G 507A>G) GTT167ATG (508G>A 510T>G) AAG169AAA (516G>A) CAT170TAT (517C>T) AAT171GGA (520A>G 521A>G 522T>A) GAA172AAG (523G>A 525A>G) AAA173AGA (527A>G) TTA174CTA (529T>C) TAT175TTC (533A>T 534T>C) ACA176ATA (536C>T) TAT177TAC (540T>C) CAG180GAA (547C>G 549G>A) ACA181ACC (552A>C) CCT182CCA (555T>A) AAC183AAT (558C>T) GCT184GCC (561T>C) AGG185ACG (563G>C) ACA186ACC (567A>C) GCA187AAA (568G>A 569C>A) CAT188AGA (571C>A 572A>G 573T>A) TAT189TAC (576T>C) TCA190ATT (577T>A 578C>T 579A>T) ACA191GTG (580A>G 581C>T 582A>G) GAT195GCA (593A>C 594T>A) TCT196TCA (597T>A) AAT198GAG (601A>G 603T>G) ATG199GTA (604A>G 606G>A) ACT200AGG (608C>G 609T>G) GCT201CCA (610G>C 612T>A) TTT202TAT (614T>A) TGT203AGT (616T>A) CCT209TCA (634C>T 636T>A) TCT211TCA (642T>A) GAA212CAG (643G>C 645A>G) GAG213GAA (648G>A) TCT214TCA (651T>A) AAA215GCA (652A>G 653A>C) TGT216TGC (657T>C) ACG217ACT (660G>T) GAA218GAG (663A>G) TAC219TAT (666C>T) ATT220ATA (669T>A) AAT221AAC (672T>C) AAT222AAC (675T>C) TTA224CTG (679T>C 681A>G) CCA226CCC (687A>C) ATA227ATC (690A>C) ACT230ACC (699T>C) AGA231AGG (702A>G) GTT233GTA (708T>A) GTA234GTG (711A>G) CCA235CCT (714A>T) TTA236GTG (715T>G 717A>G) TCG237GCA (718T>G 720G>A) TTG238ATA (721T>A 723G>A) ACT239TCG (724A>T 726T>G) GCT240TCA (727G>T 729T>A) GAT242TCA (733G>T 734A>C 735T>A) GTA243ATT (736G>A 738A>T) ATA244GAA (739A>G 740T>A) CAC245CCA (743A>C 744C>A) TAT246AGA (745T>A 746A>G 747T>A) AGA247AAA (749G>A) GCT248GTG (752C>T 753T>G) CAA249CAG (756A>G) GTG255GTA (774G>A) ATA256GTT (775A>G 777A>T) TCC257TCT (780C>T) ACA259ACG (786A>G) TTG261CTA (790T>C 792G>A) ATA271ATC (822A>C) ACT272ATA (824C>T 825T>A) AAA276AGG (836A>G 837A>G) GCA278GAT (842C>A 843A>T) AAT279AAC (846T>C) ACA280TCA (847A>T) ATT281ATA (852T>A) TCA284TCT (861A>T) GGG286GGT (867G>T) CTG287TTG (868C>T) GGA288GGC (873A>C) TCA292GCT (883T>G 885A>T) ATA294ATC (891A>C) AAG297AAA (900G>A) CCA298GCT (901C>G 903A>T) GCG299GCA (906G>A) ACA304AAT (920C>A 921A>T) TAT305TAC (924T>C) ACT306ATG (926C>T 927T>G) CGT307AGA (928C>A 930T>A) GAT308GAC (933T>C) GGT309GGA (936T>A) ACC313ACA (948C>A) GCA314GCG (951A>G) ACT316ACG (957T>G) ACT317ACG (960T>G) TGT318TGC (963T>C) GTG320GTT (969G>T) GGC322GGT (975C>T) GAC325GAT (984C>T) TTC326TTT (987C>T) AGT327AGC (990T>C) AAT329AAC (996T>C) GGA331GGC (1002A>C) TAT332TCA (1004A>C 1005T>A) ACT335ACA (1014T>A) TTT337TTC (1020T>C) GTT338GCA (1022T>C 1023T>A) GTA339ATA (1024G>A) TCT340TCG (1029T>G) AAA341AGA (1031A>G) TTT342TAT (1034T>A) GAG347GAA (1050G>A) TCA349TCG (1056A>G) TAC350TAT (1059C>T) GTC351GTA (1062C>A) TAT352TAC (1065T>C) ATC353GTT (1066A>G 1068C>T) GAT357GAC (1080T>C) CAA360CAG (1089A>G) TTT362TTC (1095T>C) CGT363AGA (1096C>A 1098T>A) AAC364AAT (1101C>T) GTG365ATG (1102G>A) GTG366GTC (1107G>C) GTC368GTG (1113C>G) TCG370TCA (1119G>A) TTA371TTG (1122A>G) GCA373GCG (1128A>G) AAC374AAT (1131C>T) TCA377GAC (1138T>G 1139C>A 1140A>C) GTT378GTA (1143T>A) ACT381TCT (1150A>T) GGA382GGC (1155A>C) GGC383GGA (1158C>A) AGC384GAT (1159A>G 1160G>A 1161C>T) TAT385TAC (1164T>C) AAT386AGC (1166A>G 1167T>C) TTT387TTC (1170T>C) AGT388GCG (1171A>G 1172G>C 1173T>G) CCA390CCT (1179A>T) GTT391GCC (1181T>C 1182T>C) CCT395CCA (1194T>A) GTT396GTG (1197T>G) TTA397ATG (1198T>A 1200A>G) ACT398AAA (1202C>A 1203T>A) GCA401GCG (1212A>G) GTT402GTG (1215T>G) TCT403ACG (1216T>A 1218T>G) TTA404TTG (1221A>G) CAT405CAC (1224T>C) TCA406ACA (1225T>A) GCT407GCA (1230T>A) GGT408GGA (1233T>A) CTA411TTA (1240C>T) ACT413ACA (1248T>A) TTT415TTC (1254T>C) ACA416ACT (1257A>T) GAT417GAC (1260T>C) TTC418TAC (1262T>A) TTA421CTG (1270T>C 1272A>G) AAT422AAC (1275T>C) TTA424CTA (1279T>C) AGA425AGG (1284A>G) CTA430CTG (1299A>G) GCT431GCA (1302T>A) CAC436TCA (1315C>T 1316A>C 1317C>A) TTT437TTC (1320T>C) AAA438ACG (1322A>C 1323A>G) CTG439ATA (1324C>A 1326G>A) ACT442ACA (1335T>A) AGA443CGT (1336A>C 1338A>T) TTA444GTA (1339T>G) GAT445TCA (1342G>T 1343A>C 1344T>A) AGA446AAA (1346G>A) TTG447CTG (1348T>C) CTG450TTA (1357C>T 1359G>A) CCT451CCA (1362T>A) GCT452GCG (1365T>G) GCA453GCG (1368A>G) GAT454AAC (1369G>A 1371T>C) AAT456AAC (1377T>C) AAT457GGC (1378A>G 1379A>G 1380T>C) GGT458GGA (1383T>A) AAA459AGG (1385A>G 1386A>G) ATT464GTG (1399A>G 1401T>G) GCT465GCA (1404T>A) CGA467AGG (1408C>A 1410A>G) TCA469TCG (1416A>G) CTT470CTG (1419T>G) TTA473TTG (1428A>G) TAT480TAC (1449T>C) CAG481CAA (1452G>A) ACT482ACG (1455T>G) CCT483CCA (1458T>A) ATA484ATT (1461A>T) GCA485ATG (1462G>A 1463C>T 1464A>G) GTT488GTA (1473T>A) ACT489ACA (1476T>A) CGA491AGA (1480C>A) GAT493GAC (1488T>C) TTA494TTG (1491A>G) CAG497CGT (1499A>G 1500G>T) GGA499AAT (1504G>A 1505G>A 1506A>T) GAA500GAG (1509A>G) CTA501TTG (1510C>T 1512A>G) TTT505TTC (1524T>C) AAC506AAT (1527C>T) GCT507AAC (1528G>A 1529C>A 1530T>C) TTG508TTA (1533G>A) TCT509TCA (1536T>A) GAA511GAG (1542A>G) ATT512ATA (1545T>A) GCA513GCT (1548A>T) ATG514GTG (1549A>G) TCG515TCA (1554G>A) ATC518ATT (1563C>T) GAT519GAC (1566T>C) GCG521GCT (1572G>T) CTT522ATG (1573C>A 1575T>G) CTA523CTG (1578A>G) TTA525CTA (1582T>C) GAT526GAC (1587T>C) TTC528TTT (1593C>T) TCA529TCG (1596A>G) TTT531TTC (1602T>C) TCT532TCG (1605T>G) GGC533GGA (1608C>A) AAA535GAG (1612A>G 1614A>G) AGT536GGT (1615A>G) ATT538GTG (1621A>G 1623T>G) GAT539AAC (1624G>A 1626T>C) GCT540GCA (1629T>A) TCA543TCG (1638A>G) ACT546ACC (1647T>C) AAT547AAC (1650T>C) GTT548GTG (1653T>G) AAA550AGG (1658A>G 1659A>G) AAG554AGT (1670A>G 1671G>T) GGA556AAA (1675G>A 1676G>A) TTA557CTC (1678T>C 1680A>C) GCG558GCA (1683G>A) AAT559TCA (1684A>T 1685A>C 1686T>A) GTT561GTG (1692T>G) ACA563ATG (1697C>T 1698A>G) CTG564TTG (1699C>T) ACA565ACG (1704A>G) GAT566GAC (1707T>C) TTA568TTG (1713A>G) TCA569TCC (1716A>C) GAC570GAT (1719C>T) GCA571GCG (1722A>G) GCA572GCC (1725A>C) TCA574TCT (1731A>T) ATA575ATC (1734A>C) TCA576GCA (1735T>G) AGA577AGG (1740A>G) GGT578AGC (1741G>A 1743T>C) TCA579ACA (1744T>A) TCT580TCA (1749T>A) CGT582CGA (1755T>A) TCG583TCA (1758G>A) ATT584ATA (1761T>A) TCT586TCG (1767T>G) TCA587ACG (1768T>A 1770A>G) GCA590GCT (1779A>T) ACG592GCT (1783A>G 1785G>T) GAT593AAT (1786G>A) GTA594ATT (1789G>A 1791A>T) ACA596GAA (1795A>G 1796C>A) ATA598ACG (1802T>C 1803A>G) ACT599CAA (1804A>C 1805C>A 1806T>A) GAT600GAC (1809T>C) ATA601GCC (1810A>G 1811T>C 1812A>C) TCG602GTT (1813T>G 1814C>T 1815G>T) TCA603AAT (1816T>A 1817C>A 1818A>T) TCA604GAA (1819T>G 1820C>A) GTA605GTT (1824A>T) AGT606GCG (1825A>G 1826G>C 1827T>G) TCA607ACG (1828T>A 1830A>G) GTT608ATA (1831G>A 1833T>A) TCG609TCA (1836G>A) ACA610TCA (1837A>T) ACG612GTG (1843A>G 1844C>T) ACT614CAA (1849A>C 1850C>A 1851T>A) ATC615ATA (1854C>A) AGA617GGG (1858A>G 1860A>G) AGA618AAA (1862G>A) TTG619TTA (1866G>A) CTA621TTA (1870C>T) AAG622AAA (1875G>A) ATG624ATT (1881G>T) GCA625ACG (1882G>A 1884A>G) ACA626ACT (1887A>T) ACT628ACA (1893T>A) GAG629GAA (1896G>A) GGT630GGA (1899T>A) TTT633TTC (1908T>C) GAT635GAC (1914T>C) GCT639GCG (1926T>G) GTT640GTG (1929T>G) TTG641CTA (1930T>C 1932G>A) AAG642AAA (1935G>A) ACT643GCC (1936A>G 1938T>C) AAA647AGA (1949A>G) TCG648TCA (1953G>A) ACT649ATA (1955C>T 1956T>A) CAA650CAG (1959A>G) ATA651GTC (1960A>G 1962A>C) TCA652GAC (1963T>G 1964C>A 1965A>C) CCA653CAA (1967C>A) ACA655GCA (1972A>G) ATA656TTA (1975A>T) CCT657CCA (1980T>A) ATT659GTC (1984A>G 1986T>C) GTT660ATC (1987G>A 1989T>C) ACT661ACA (1992T>A) GCA663GCG (1998A>G) TCG664TCA (2001G>A) GAA665GAG (2004A>G) CCA669CGT (2015C>G 2016A>T) GCT672GCG (2025T>G) TAC673TAT (2028C>T) CGT674AGA (2029C>A 2031T>A) GTT675GTA (2034T>A) AAC677GAC (2038A>G) AAC678GGA (2041A>G 2042A>G 2043C>A) GAT680GAA (2049T>A) GTG681GCA (2051T>C 2052G>A) GAA683GAG (2058A>G) GCT684GCG (2061T>G) GGA685GGC (2064A>C) ATT686ACT (2066T>C) GAT687GAC (2070T>C) AAA689AGA (2075A>G) TTT691TTC (2082T>C) GCT692GCG (2085T>G) TAT693TAC (2088T>C) AAA694AAG (2091A>G) GAT696GAA (2097T>A) ACA697ACG (2100A>G) TTT698CTT (2101T>C) ATA701ATG (2112A>G) TTT703TTC (2118T>C) GAT704AAT (2119G>A) GTA705ATA (2122G>A) CAA706GAA (2125C>G) GCT709GCA (2136T>A) GAC710GAT (2139C>T) ACA713ACC (2148A>C) GAT714AAC (2149G>A 2151T>C) TCT715TCA (2154T>A) GTA717GTG (2160A>G) TCC719TCG (2166C>G) GCT720GCA (2169T>A) ATT722ATA (2175T>A) GAT723GAC (2178T>C) AAA725AAG (2184A>G) CTT727TTA (2188C>T 2190T>A) AAT729AAC (2196T>C) TTG730CTG (2197T>C) AAC731AAT (2202C>T) GAT732GAC (2205T>C) TAC734TAT (2211C>T) GGC735GGG (2214C>G) ATT736ATA (2217T>A) AAG738AGA (2222A>G 2223G>A) CAA739GAG (2224C>G 2226A>G) CTT744CTG (2241T>G) AGA746CGG (2245A>C 2247A>G) TCT747TCA (2250T>A) GAC748AAC (2251G>A) CCA749CCC (2256A>C) AGA750AAA (2258G>A) TTA752TTG (2265A>G) GAA754GGA (2270A>G) TTC755TTT (2274C>T) AAT757GAC (2278A>G 2280T>C) CAG758CAA (2283G>A) GAC759AAC (2284G>A) CCT761CCA (2292T>A) ATA762ATT (2295A>T) ATT763ATA (2298T>A) AGA764AAA (2300G>A) AAT765AAC (2304T>C) ATT767ATA (2310T>A) CTG770TTA (2317C>T 2319G>A) ATT771ATC (2322T>C) TGC774TGT (2331C>T) AGG775AGA (2334G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43