Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Rotavirus A (segment 5)

Assembly

1614 (1 contig(s))
23447.3
336717
21726.48 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Rotavirus A (Taxonomy ID: 28875)
54.7529
38.8211
1
1

Alignment

segment 5
156.0 (NT) + 1504.0 (AA) = 1660.0
25.7604
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT11614100%1565.3%1554 (94.9%)864 (52.7%)24/60
Mutations:
10T>A 26T>G 36T>G 48T>C 51A>T 54C>T 56T>A 64C>A 65G>A 66T>A 68G>A 69A>G 72A>G 74C>A 76G>A 77C>A 78T>G 85C>A 87G>T 88A>T 89G>T 91T>G 93A>G 94T>C 95G>T 99C>A 100A>C 102T>A 105T>A 112T>G 113C>A 115A>G 116T>A 117T>A 120C>G 122T>G 128T>C 129T>A 132T>A 134A>T 135T>G 136G>A 138G>A 142A>T 143T>A 147G>A 150G>A 162A>T 172A>T 173T>A 174A>T 175G>A 177T>A 178G>A 183A>G 186C>A 187C>T 192T>C 193T>A 194A>G 195T>A 198T>G 202T>G 204A>T 205T>C 207G>A 208C>T 209C>A 210G>C 216T>A 219C>T 220A>C 222A>G 228T>C 229G>A 230T>G 235A>T 237C>T 239G>A 240A>C 243A>G 246C>T 250C>T 252T>A 255C>T 256A>G 258T>A 264T>C 273T>G 275A>G 276G>A 277C>A 279T>G 280A>C 285T>A 286G>T 288G>T 292C>G 295C>G 296C>T 298A>G 300T>A 303C>A 306A>G 309C>A 310A>G 312A>T 313T>A 316C>G 318G>A 319T>G 321T>G 322A>C 324C>G 325A>C 328G>A 329A>C 331T>A 336C>T 337A>G 339T>A 341T>C 342A>G 343A>T 345A>G 354T>A 360T>A 363A>G 364G>T 366A>G 367A>G 369T>G 371G>A 372A>T 378T>C 379G>A 380A>T 383G>A 384A>C 385A>T 386T>C 387G>T 388A>G 390A>G 393G>A 396A>G 397A>C 399A>T 402A>G 412C>G 418A>T 419A>T 420A>G 421A>T 423T>A 438T>C 441G>A 444G>A 445C>A 447C>G 453T>A 460A>C 462T>A 465T>A 466G>T 467C>T 468T>G 469G>A 471A>T 472T>A 474T>A 477G>T 478T>C 481_483delGAT 486A>G 487A>G 493C>G 495T>A 502G>A 504T>A 510G>A 512T>A 513A>C 519G>T 520A>T 521A>G 522A>C 523T>A 524C>T 525A>G 527T>A 528C>G 529A>C 530G>A 534T>A 536T>A 537A>C 538T>C 540T>A 541G>A 543T>A 548A>T 549T>C 550A>C 551G>A 553A>T 556G>A 561C>T 562T>C 564T>A 565A>C 568A>G 570T>A 571G>A 575T>A 585A>G 586T>C 588G>A 591T>A 599T>G 600T>A 603C>T 606T>C 607A>C 608C>A 609A>T 618C>A 619A>C 621T>C 622C>T 628A>G 631G>A 632A>T 633G>A 637A>C 638G>A 640A>C 642C>A 643C>G 645T>G 651A>T 652A>T 653A>T 656A>G 660C>T 663C>T 664C>T 665A>C 667T>A 668T>A 676C>T 678G>T 679C>T 680C>T 682T>A 683C>G 684A>T 685T>A 686C>A 688A>G 689A>G 690A>G 691C>A 692T>A 693A>G 697C>A 698A>G 700A>T 702T>G 703T>A 704A>G 706T>A 707T>G 708T>G 709T>A 710C>G 711A>T 717T>C 718A>T 720T>A 721_723delAAA 726A>T 728C>G 730G>C 732G>T 735T>G 736T>G 737T>A 738T>A 739A>G 743C>G 744T>A 745T>C 749C>G 750A>T 751A>C 752A>C 756G>A 757C>T 760G>T 761G>T 764G>T 765A>G 766T>C 767C>A 769A>G 771A>G 772T>G 773A>T 774C>A 775A>C 777A>T 780T>C 780_781insTGCATCAGTATACAC 781G>A 785C>A 789A>T 791T>G 793A>G 795T>A 800G>A 801A>T 802G>A 804T>A 806A>C 807A>G 809T>G 810G>T 811G>A 812A>C 817T>A 818A>T 819T>A 820T>G 821C>T 826T>G 827T>C 828A>T 830A>G 835G>T 839A>T 840G>T 842A>G 844_858delAAATTAATTGCTGCA 861G>T 866C>A 867G>C 868A>T 869G>C 870T>A 871A>T 872A>C 880C>G 881G>A 883T>C 884T>A 885C>T 889G>A 890C>G 892C>G 893A>T 894T>G 895G>T 896A>C 897T>A 898A>C 900T>A 902A>G 903T>A 905T>G 907G>A 908G>A 909A>G 910A>T 911G>T 915G>T 917A>C 918A>T 920T>A 922A>T 923C>A 924A>T 926T>A 932A>G 934T>A 936G>C 938G>T 940C>T 941A>C 942T>A 943C>A 944A>G 945T>A 947G>T 948T>G 948_949insGTG 949C>A 951G>A 954T>G 957C>T 961G>A 963G>T 964G>T 965C>T 966A>T 969T>C 971A>G 972T>C 975C>T 976C>G 977C>A 979G>T 980G>C 981C>A 982A>T 983A>G 984T>C 987T>A 989C>T 990C>A 991G>A 993T>C 994A>G 996C>A 999G>T 1000T>A 1015A>C 1017T>G 1020A>C 1023A>C 1023_1024insAACCAT 1026T>C 1027T>A 1028T>A 1029T>A 1030C>G 1032T>G 1033A>T 1035T>G 1036A>G 1039_1041delATT 1046G>T 1047G>T 1048C>A 1050G>A 1051A>C 1054C>A 1056T>G 1057G>A 1059T>A 1062G>A 1069T>A 1070T>A 1071A>T 1072T>G 1074G>A 1080A>T 1086T>C 1088A>G 1091A>C 1092T>A 1093T>C 1094G>T 1096T>G 1097A>T 1098T>G 1102A>T 1103G>C 1104T>G 1109T>G 1110T>A 1113C>T 1126A>T 1127G>C 1128T>A 1131T>C 1132G>C 1133T>A 1134T>G 1138A>T 1139A>C 1140C>A 1141A>G 1143A>G 1147C>A 1148C>A 1149T>G 1151T>A 1152A>T 1155T>A 1156A>C 1157A>C 1159A>G 1160G>A 1161A>T 1165A>T 1169G>T 1170G>A 1172G>T 1175T>G 1176G>T 1177T>A 1178T>A 1179T>A 1182T>G 1183A>G 1185T>A 1186C>A 1188C>A 1189A>T 1190T>G 1192G>A 1194T>C 1195C>G 1198A>G 1200A>T 1201A>G 1203T>C 1207G>A 1208A>T 1209A>G 1210G>T 1212G>A 1219C>T 1221C>T 1222A>C 1224G>A 1225T>G 1226C>A 1227G>A 1234T>G 1235C>A 1236A>C 1237G>A 1239T>A 1240G>A 1242A>T 1245T>A 1249A>G 1251T>G 1252G>T 1253T>A 1254C>T 1255A>G 1257C>A 1258A>T 1260G>A 1263G>A 1264A>G 1265T>A 1266T>C 1267C>T 1268T>A 1271G>A 1273T>G 1278T>C 1279A>T 1280T>G 1281T>G 1282A>G 1283G>A 1284T>A 1285T>G 1288T>A 1289A>G 1290T>G 1291A>G 1292A>G 1293T>A 1294G>C 1295A>T 1297A>G 1299T>C 1301A>T 1304G>A 1305C>A 1307C>A 1308T>C 1309T>A 1312A>G 1315_1317delGTA 1319A>G 1320T>G 1322G>A 1323C>A 1324A>G 1331T>G 1332G>A 1333G>A 1335A>T 1336C>T 1338T>G 1342T>A 1344A>G 1350A>T 1351T>A 1352T>C 1353C>A 1355G>A 1356T>G 1358G>A 1359T>G 1363G>C 1365T>G 1367A>G 1368A>T 1369T>G 1371A>G 1374T>G 1376G>T 1377C>A 1378A>T 1379G>T 1381A>G 1383A>C 1388A>T 1390A>G 1393G>A 1394T>C 1395T>A 1396G>A 1397A>G 1398T>A 1399G>T 1401A>T 1402T>A 1405G>A 1406A>G 1407T>A 1408A>G 1411T>A 1412T>C 1413G>A 1420T>A 1422A>G 1424T>C 1425A>G 1426A>T 1427A>C 1429T>A 1434G>A 1435G>A 1437G>C 1438G>C 1443G>T 1444A>C 1445T>G 1446T>A 1447G>A 1448A>C 1450A>C 1455G>C 1458T>A 1459T>A 1460C>G 1461T>G 1462G>A 1463G>A 1464A>T 1465A>G 1466C>A 1467T>A 1468T>C 1470A>C 1472C>T 1473T>A 1476A>T 1479A>G 1481T>A 1482T>C 1485G>C 1486C>T 1489C>G 1490T>A 1491G>A 1492A>C 1494C>T 1497C>A 1498_1509delAACTCAGAAGAT 1512C>T 1513A>G 1514A>T 1520G>A 1523_1527delATTAC 1530A>T 1531T>G 1537T>A 1539T>C 1540_1554delCTAATTATACAGTAT 1556T>A 1557A>C 1562T>G 1575C>T 1576A>G 1577G>C 1595C>G 1596T>C 1597G>A 1601A>T 1604T>A 1606delC 1612A>C
CDS
1497100%150443.3%484 (95.8%)191 (37.8%)8/13/0/01
Protein mutations:
F9Y (56T>A) R12K (64C>A 65G>A 66T>A) R13K (68G>A 69A>G) T15N (74C>A) A16K (76G>A 77C>A 78T>G) R19S (85C>A 87G>T) R20L (88A>T 89G>T) L21V (91T>G 93A>G) C22L (94T>C 95G>T) N23K (99C>A) I24L (100A>C 102T>A) S28D (112T>G 113C>A) I29E (115A>G 116T>A 117T>A) C30W (120C>G) M31R (122T>G) V33A (128T>C 129T>A) D35V (134A>T 135T>G) A36T (136G>A 138G>A) I38Y (142A>T 143T>A) E44D (162A>T) I48Y (172A>T 173T>A 174A>T) A49T (175G>A 177T>A) D50N (178G>A) H53Y (187C>T) Y55R (193T>A 194A>G 195T>A) S58A (202T>G 204A>T) P60Y (208C>T 209C>A 210G>C) K64Q (220A>C 222A>G) V67S (229G>A 230T>G) N69Y (235A>T 237C>T) R70N (239G>A 240A>C) N76E (256A>G 258T>A) K82R (275A>G 276G>A) L83M (277C>A 279T>G) V86F (286G>T 288G>T) H88D (292C>G) P89V (295C>G 296C>T) I90V (298A>G 300T>A) D93E (309C>A) K94D (310A>G 312A>T) L95I (313T>A) Q96E (316C>G 318G>A) C97G (319T>G 321T>G) I98L (322A>C 324C>G) I99L (325A>C) D100T (328G>A 329A>C) L101M (331T>A) N103E (337A>G 339T>A) I104T (341T>C 342A>G) I105L (343A>T 345A>G) D110E (360T>A) V112L (364G>T 366A>G) I113V (367A>G 369T>G) R114N (371G>A 372A>T) E117I (379G>A 380A>T) R118N (383G>A 384A>C) M119S (385A>T 386T>C 387G>T) I120V (388A>G 390A>G) Q128E (412C>G) K130L (418A>T 419A>T 420A>G) I131L (421A>T 423T>A) L139M (445C>A 447C>G) N144Q (460A>C 462T>A) A146L (466G>T 467C>T 468T>G) A147T (469G>A 471A>T) F148I (472T>A 474T>A) K149N (477G>T) F150L (478T>C) D151del (481_483delGAT) N153D (487A>G) L155V (493C>G 495T>A) V158I (502G>A 504T>A) L161Y (512T>A 513A>C) E163D (519G>T) K164C (520A>T 521A>G 522A>C) S165M (523T>A 524C>T 525A>G) V166E (527T>A 528C>G) S167H (529A>C 530G>A) D168E (534T>A) I169N (536T>A 537A>C) Y170Q (538T>C 540T>A) A171T (541G>A 543T>A) Y173F (548A>T 549T>C) R174Q (550A>C 551G>A) I175F (553A>T) V176I (556G>A) F178L (562T>C 564T>A) I179L (565A>C) N180E (568A>G 570T>A) E181K (571G>A) F182Y (575T>A) I190R (599T>G 600T>A) T193H (607A>C 608C>A 609A>T) N197H (619A>C 621T>C) I200V (628A>G) E201I (631G>A 632A>T 633G>A) R203Q (637A>C 638G>A) N204Q (640A>C 642C>A) H205E (643C>G 645T>G) K208L (652A>T 653A>T) K209R (656A>G) Q212S (664C>T 665A>C) L213K (667T>A 668T>A) L216F (676C>T 678G>T) P217L (679C>T 680C>T) S219K (685T>A 686C>A) K220G (688A>G 689A>G 690A>G) L221K (691C>A 692T>A 693A>G) Q223R (697C>A 698A>G) I224L (700A>T 702T>G) Y225S (703T>A 704A>G) F226R (706T>A 707T>G 708T>G) T230S (718A>T 720T>A) K231del (721_723delAAA) E232D (726A>T) T233S (728C>G) V234L (730G>C 732G>T) I235M (735T>G) F236E (736T>G 737T>A 738T>A) N237D (739A>G) T238R (743C>G 744T>A) Y239H (745T>C) T240S (749C>G 750A>T) K241P (751A>C 752A>C) P243S (757C>T) G244L (760G>T 761G>T) R245M (764G>T 765A>G) S246Q (766T>C 767C>A) I247V (769A>G 771A>G) Y248V (772T>G 773A>T 774C>A) N250_V251insCISIH (780_781insTGCATCAGTATACAC) V251I (781G>A) T252N (785C>A) E253D (789A>T) F254C (791T>G) N255E (793A>G 795T>A) R257N (800G>A 801A>T) D258K (802G>A 804T>A) E259A (806A>C 807A>G) L260C (809T>G 810G>T) E261T (811G>A 812A>C) Y263I (817T>A 818A>T 819T>A) S264V (820T>G 821C>T) L266A (826T>G 827T>C 828A>T) K267R (830A>G) D269Y (835G>T) K270I (839A>T 840G>T) N271S (842A>G) K272_A276del (844_858delAAATTAATTGCTGCA) M277I (861G>T) T279N (866C>A 867G>C) K281S (871A>T 872A>C) R284E (880C>G 881G>A) F285H (883T>C 884T>A 885C>T) A287S (889G>A 890C>G) H288V (892C>G 893A>T 894T>G) D289S (895G>T 896A>C 897T>A) N290Q (898A>C 900T>A) N291R (902A>G 903T>A) F292C (905T>G) G293K (907G>A 908G>A 909A>G) R294L (910A>T 911G>T) L295F (915G>T) K296T (917A>C 918A>T) M297K (920T>A) T298Y (922A>T 923C>A 924A>T) I299K (926T>A) E301G (932A>G) L302I (934T>A 936G>C) G303V (938G>T) H304S (940C>T 941A>C 942T>A) H305R (943C>A 944A>G 945T>A) C306L (947G>T 948T>G) C306_Q307insV (948_949insGTG) Q307K (949C>A 951G>A) V311I (961G>A 963G>T) A312F (964G>T 965C>T 966A>T) N314S (971A>G 972T>C) P316E (976C>G 977C>A) G317S (979G>T 980G>C 981C>A) N318C (982A>T 983A>G 984T>C) S320L (989C>T 990C>A) D321N (991G>A 993T>C) I322V (994A>G 996C>A) Q323H (999G>T) Y324N (1000T>A) N329Q (1015A>C 1017T>G) K331N (1023A>C) K331_Y332insNH (1023_1024insAACCAT) F333K (1027T>A 1028T>A 1029T>A) L334V (1030C>G 1032T>G) S335W (1033A>T 1035T>G) K336E (1036A>G) I337del (1039_1041delATT) W339F (1046G>T 1047G>T) I341L (1051A>C) D343K (1057G>A 1059T>A) M344I (1062G>A) L347N (1069T>A 1070T>A 1071A>T) L348V (1072T>G 1074G>A) E350D (1080A>T) K353R (1088A>G) D354A (1091A>C 1092T>A) C355L (1093T>C 1094G>T) Y356V (1096T>G 1097A>T 1098T>G) V360G (1109T>G 1110T>A) V368Q (1132G>C 1133T>A 1134T>G) N370S (1138A>T 1139A>C 1140C>A) I371V (1141A>G 1143A>G) P373K (1147C>A 1148C>A 1149T>G) L374Y (1151T>A 1152A>T) K376P (1156A>C 1157A>C) R377D (1159A>G 1160G>A 1161A>T) I379F (1165A>T) W380L (1169G>T 1170G>A) S381I (1172G>T) L382C (1175T>G 1176G>T) F383K (1177T>A 1178T>A 1179T>A) N385E (1183A>G 1185T>A) H386K (1186C>A 1188C>A) M387W (1189A>T 1190T>G) D388N (1192G>A 1194T>C) Q389E (1195C>G) T390A (1198A>G 1200A>T) I391V (1201A>G 1203T>C) E393M (1207G>A 1208A>T 1209A>G) V394L (1210G>T 1212G>A) H397Y (1219C>T 1221C>T) M398L (1222A>C 1224G>A) S399E (1225T>G 1226C>A 1227G>A) S402D (1234T>G 1235C>A 1236A>C) V403I (1237G>A 1239T>A) E404N (1240G>A 1242A>T) N407E (1249A>G 1251T>G) V408Y (1252G>T 1253T>A 1254C>T) I409V (1255A>G 1257C>A) M410L (1258A>T 1260G>A) I412D (1264A>G 1265T>A 1266T>C) L413Y (1267C>T 1268T>A) G414E (1271G>A) L415V (1273T>G) I417W (1279A>T 1280T>G 1281T>G) S418E (1282A>G 1283G>A 1284T>A) L419V (1285T>G) Y420R (1288T>A 1289A>G 1290T>G) N421G (1291A>G 1292A>G 1293T>A) E422L (1294G>C 1295A>T) I423V (1297A>G 1299T>C) K424M (1301A>T) R425Q (1304G>A 1305C>A) T426N (1307C>A 1308T>C) L427M (1309T>A) N428D (1312A>G) V429del (1315_1317delGTA) D430G (1319A>G 1320T>G) S431K (1322G>A 1323C>A) I432V (1324A>G) M434R (1331T>G 1332G>A) V435I (1333G>A 1335A>T) L438M (1342T>A 1344A>G) E440D (1350A>T) F441T (1351T>A 1352T>C 1353C>A) S442K (1355G>A 1356T>G) S443K (1358G>A 1359T>G) V445L (1363G>C 1365T>G) K446S (1367A>G 1368A>T) S447A (1369T>G 1371A>G) I448M (1374T>G) S449I (1376G>T 1377C>A) S450F (1378A>T 1379G>T) K451D (1381A>G 1383A>C) Y453F (1388A>T) N454D (1390A>G) V455T (1393G>A 1394T>C 1395T>A) D456R (1396G>A 1397A>G 1398T>A) E457Y (1399G>T 1401A>T) L458M (1402T>A) D459R (1405G>A 1406A>G 1407T>A) K460E (1408A>G) L461T (1411T>A 1412T>C 1413G>A) S464T (1420T>A 1422A>G) I465T (1424T>C 1425A>G) K466S (1426A>T 1427A>C) S467T (1429T>A) E469N (1435G>A 1437G>C) E470Q (1438G>C) I472R (1444A>C 1445T>G 1446T>A) E473T (1447G>A 1448A>C) M474L (1450A>C) K475N (1455G>C) N476K (1458T>A) S477R (1459T>A 1460C>G 1461T>G) G478N (1462G>A 1463G>A 1464A>T) T479E (1465A>G 1466C>A 1467T>A) T481I (1472C>T 1473T>A) E482D (1476A>T) F484Y (1481T>A 1482T>C) E485D (1485G>C) L487E (1489C>G 1490T>A 1491G>A) I488L (1492A>C 1494C>T) N490_D493del (1498_1509delAACTCAGAAGAT) N495V (1513A>G 1514A>T)
Codon mutations:
GCT2GCG (36T>G) GAT6GAC (48T>C) GCA7GCT (51A>T) TGC8TGT (54C>T) TTT9TAT (56T>A) CGT12AAA (64C>A 65G>A 66T>A) AGA13AAG (68G>A 69A>G) TTA14TTG (72A>G) ACT15AAT (74C>A) GCT16AAG (76G>A 77C>A 78T>G) CGG19AGT (85C>A 87G>T) AGA20TTA (88A>T 89G>T) TTA21GTG (91T>G 93A>G) TGC22CTC (94T>C 95G>T) AAC23AAA (99C>A) ATT24CTA (100A>C 102T>A) GGT25GGA (105T>A) TCT28GAT (112T>G 113C>A) ATT29GAA (115A>G 116T>A 117T>A) TGC30TGG (120C>G) ATG31AGG (122T>G) GTT33GCA (128T>C 129T>A) CCT34CCA (132T>A) GAT35GTG (134A>T 135T>G) GCG36ACA (136G>A 138G>A) ATT38TAT (142A>T 143T>A) AAG39AAA (147G>A) GGG40GGA (150G>A) GAA44GAT (162A>T) ATA48TAT (172A>T 173T>A 174A>T) GCT49ACA (175G>A 177T>A) GAT50AAT (178G>A) TTA51TTG (183A>G) ACC52ACA (186C>A) CAT53TAT (187C>T) TGT54TGC (192T>C) TAT55AGA (193T>A 194A>G 195T>A) GGT56GGG (198T>G) TCA58GCT (202T>G 204A>T) TTG59CTA (205T>C 207G>A) CCG60TAC (208C>T 209C>A 210G>C) GTT62GTA (216T>A) TGC63TGT (219C>T) AAA64CAG (220A>C 222A>G) TGT66TGC (228T>C) GTT67AGT (229G>A 230T>G) AAC69TAT (235A>T 237C>T) AGA70AAC (239G>A 240A>C) AGA71AGG (243A>G) TGC72TGT (246C>T) CTT74TTA (250C>T 252T>A) GAC75GAT (255C>T) AAT76GAA (256A>G 258T>A) CCT78CCC (264T>C) CTT81CTG (273T>G) AAG82AGA (275A>G 276G>A) CTT83ATG (277C>A 279T>G) AGA84CGA (280A>C) ACT85ACA (285T>A) GTG86TTT (286G>T 288G>T) CAT88GAT (292C>G) CCA89GTA (295C>G 296C>T) ATT90GTA (298A>G 300T>A) ACC91ACA (303C>A) AAA92AAG (306A>G) GAC93GAA (309C>A) AAA94GAT (310A>G 312A>T) TTA95ATA (313T>A) CAG96GAA (316C>G 318G>A) TGT97GGG (319T>G 321T>G) ATC98CTG (322A>C 324C>G) ATA99CTA (325A>C) GAC100ACC (328G>A 329A>C) TTG101ATG (331T>A) TAC102TAT (336C>T) AAT103GAA (337A>G 339T>A) ATA104ACG (341T>C 342A>G) ATA105TTG (343A>T 345A>G) ATT108ATA (354T>A) GAT110GAA (360T>A) AAA111AAG (363A>G) GTA112TTG (364G>T 366A>G) ATT113GTG (367A>G 369T>G) AGA114AAT (371G>A 372A>T) TTT116TTC (378T>C) GAA117ATA (379G>A 380A>T) AGA118AAC (383G>A 384A>C) ATG119TCT (385A>T 386T>C 387G>T) ATA120GTG (388A>G 390A>G) AAG121AAA (393G>A) CAA122CAG (396A>G) AGA123CGT (397A>C 399A>T) AAA124AAG (402A>G) CAA128GAA (412C>G) AAA130TTG (418A>T 419A>T 420A>G) ATT131TTA (421A>T 423T>A) CAT136CAC (438T>C) TTG137TTA (441G>A) CTG138CTA (444G>A) CTC139ATG (445C>A 447C>G) ATT141ATA (453T>A) AAT144CAA (460A>C 462T>A) GCT145GCA (465T>A) GCT146TTG (466G>T 467C>T 468T>G) GCA147ACT (469G>A 471A>T) TTT148ATA (472T>A 474T>A) AAG149AAT (477G>T) TTT150CTT (478T>C) GAT151del (481_483delGAT) GAA152GAG (486A>G) AAT153GAT (487A>G) CTT155GTA (493C>G 495T>A) GTT158ATA (502G>A 504T>A) GGG160GGA (510G>A) TTA161TAC (512T>A 513A>C) GAG163GAT (519G>T) AAA164TGC (520A>T 521A>G 522A>C) TCA165ATG (523T>A 524C>T 525A>G) GTC166GAG (527T>A 528C>G) AGT167CAT (529A>C 530G>A) GAT168GAA (534T>A) ATA169AAC (536T>A 537A>C) TAT170CAA (538T>C 540T>A) GCT171ACA (541G>A 543T>A) TAT173TTC (548A>T 549T>C) AGA174CAA (550A>C 551G>A) ATT175TTT (553A>T) GTT176ATT (556G>A) AAC177AAT (561C>T) TTT178CTA (562T>C 564T>A) ATA179CTA (565A>C) AAT180GAA (568A>G 570T>A) GAA181AAA (571G>A) TTT182TAT (575T>A) TTA185TTG (585A>G) TTG186CTA (586T>C 588G>A) CTT187CTA (591T>A) ATT190AGA (599T>G 600T>A) AAC191AAT (603C>T) TTT192TTC (606T>C) ACA193CAT (607A>C 608C>A 609A>T) TCC196TCA (618C>A) AAT197CAC (619A>C 621T>C) CTA198TTA (622C>T) ATA200GTA (628A>G) GAG201ATA (631G>A 632A>T 633G>A) AGA203CAA (637A>C 638G>A) AAC204CAA (640A>C 642C>A) CAT205GAG (643C>G 645T>G) GCA207GCT (651A>T) AAG208TTG (652A>T 653A>T) AAA209AGA (656A>G) TAC210TAT (660C>T) TTC211TTT (663C>T) CAA212TCA (664C>T 665A>C) TTA213AAA (667T>A 668T>A) CTG216TTT (676C>T 678G>T) CCA217TTA (679C>T 680C>T) TCA218AGT (682T>A 683C>G 684A>T) TCA219AAA (685T>A 686C>A) AAA220GGG (688A>G 689A>G 690A>G) CTA221AAG (691C>A 692T>A 693A>G) CAA223AGA (697C>A 698A>G) ATT224TTG (700A>T 702T>G) TAC225AGC (703T>A 704A>G) TTT226AGG (706T>A 707T>G 708T>G) TCA227AGT (709T>A 710C>G 711A>T) TTT229TTC (717T>C) ACT230TCA (718A>T 720T>A) AAA231del (721_723delAAA) GAA232GAT (726A>T) ACT233AGT (728C>G) GTG234CTT (730G>C 732G>T) ATT235ATG (735T>G) TTT236GAA (736T>G 737T>A 738T>A) AAT237GAT (739A>G) ACT238AGA (743C>G 744T>A) TAT239CAT (745T>C) ACA240AGT (749C>G 750A>T) AAA241CCA (751A>C 752A>C) ACG242ACA (756G>A) CCA243TCA (757C>T) GGA244TTA (760G>T 761G>T) AGA245ATG (764G>T 765A>G) TCA246CAA (766T>C 767C>A) ATA247GTG (769A>G 771A>G) TAC248GTA (772T>G 773A>T 774C>A) AGA249CGT (775A>C 777A>T) AAT250AAC (780T>C) AAT250_GTA251insTGCATCAGTATACAC (780_781insTGCATCAGTATACAC) GTA251ATA (781G>A) ACT252AAT (785C>A) GAA253GAT (789A>T) TTT254TGT (791T>G) AAT255GAA (793A>G 795T>A) AGA257AAT (800G>A 801A>T) GAT258AAA (802G>A 804T>A) GAA259GCG (806A>C 807A>G) TTG260TGT (809T>G 810G>T) GAG261ACG (811G>A 812A>C) TAT263ATA (817T>A 818A>T 819T>A) TCT264GTT (820T>G 821C>T) TTA266GCT (826T>G 827T>C 828A>T) AAA267AGA (830A>G) GAT269TAT (835G>T) AAG270ATT (839A>T 840G>T) AAT271AGT (842A>G) AAA272_GCA276del (844_858delAAATTAATTGCTGCA) ATG277ATT (861G>T) ACG279AAC (866C>A 867G>C) AGT280TCA (868A>T 869G>C 870T>A) AAG281TCG (871A>T 872A>C) CGG284GAG (880C>G 881G>A) TTC285CAT (883T>C 884T>A 885C>T) GCT287AGT (889G>A 890C>G) CAT288GTG (892C>G 893A>T 894T>G) GAT289TCA (895G>T 896A>C 897T>A) AAT290CAA (898A>C 900T>A) AAT291AGA (902A>G 903T>A) TTT292TGT (905T>G) GGA293AAG (907G>A 908G>A 909A>G) AGG294TTG (910A>T 911G>T) TTG295TTT (915G>T) AAA296ACT (917A>C 918A>T) ATG297AAG (920T>A) ACA298TAT (922A>T 923C>A 924A>T) ATA299AAA (926T>A) GAG301GGG (932A>G) TTG302ATC (934T>A 936G>C) GGA303GTA (938G>T) CAT304TCA (940C>T 941A>C 942T>A) CAT305AGA (943C>A 944A>G 945T>A) TGT306TTG (947G>T 948T>G) TGT306_CAG307insGTG (948_949insGTG) CAG307AAA (949C>A 951G>A) CCT308CCG (954T>G) AAC309AAT (957C>T) GTG311ATT (961G>A 963G>T) GCA312TTT (964G>T 965C>T 966A>T) TCT313TCC (969T>C) AAT314AGC (971A>G 972T>C) CAC315CAT (975C>T) CCA316GAA (976C>G 977C>A) GGC317TCA (979G>T 980G>C 981C>A) AAT318TGC (982A>T 983A>G 984T>C) GCT319GCA (987T>A) TCC320TTA (989C>T 990C>A) GAT321AAC (991G>A 993T>C) ATC322GTA (994A>G 996C>A) CAG323CAT (999G>T) TAC324AAC (1000T>A) AAT329CAG (1015A>C 1017T>G) ATA330ATC (1020A>C) AAA331AAC (1023A>C) AAA331_TAT332insAACCAT (1023_1024insAACCAT) TAT332TAC (1026T>C) TTT333AAA (1027T>A 1028T>A 1029T>A) CTT334GTG (1030C>G 1032T>G) AGT335TGG (1033A>T 1035T>G) AAA336GAA (1036A>G) ATT337del (1039_1041delATT) TGG339TTT (1046G>T 1047G>T) CGG340AGA (1048C>A 1050G>A) ATT341CTT (1051A>C) CGT342AGG (1054C>A 1056T>G) GAT343AAA (1057G>A 1059T>A) ATG344ATA (1062G>A) TTA347AAT (1069T>A 1070T>A 1071A>T) TTG348GTA (1072T>G 1074G>A) GAA350GAT (1080A>T) ATT352ATC (1086T>C) AAG353AGG (1088A>G) GAT354GCA (1091A>C 1092T>A) TGT355CTT (1093T>C 1094G>T) TAT356GTG (1096T>G 1097A>T 1098T>G) AGT358TCG (1102A>T 1103G>C 1104T>G) GTT360GGA (1109T>G 1110T>A) AAC361AAT (1113C>T) AGT366TCA (1126A>T 1127G>C 1128T>A) TCT367TCC (1131T>C) GTT368CAG (1132G>C 1133T>A 1134T>G) AAC370TCA (1138A>T 1139A>C 1140C>A) ATA371GTG (1141A>G 1143A>G) CCT373AAG (1147C>A 1148C>A 1149T>G) TTA374TAT (1151T>A 1152A>T) ATT375ATA (1155T>A) AAA376CCA (1156A>C 1157A>C) AGA377GAT (1159A>G 1160G>A 1161A>T) ATT379TTT (1165A>T) TGG380TTA (1169G>T 1170G>A) AGT381ATT (1172G>T) TTG382TGT (1175T>G 1176G>T) TTT383AAA (1177T>A 1178T>A 1179T>A) ACT384ACG (1182T>G) AAT385GAA (1183A>G 1185T>A) CAC386AAA (1186C>A 1188C>A) ATG387TGG (1189A>T 1190T>G) GAT388AAC (1192G>A 1194T>C) CAA389GAA (1195C>G) ACA390GCT (1198A>G 1200A>T) ATT391GTC (1201A>G 1203T>C) GAA393ATG (1207G>A 1208A>T 1209A>G) GTG394TTA (1210G>T 1212G>A) CAC397TAT (1219C>T 1221C>T) ATG398CTA (1222A>C 1224G>A) TCG399GAA (1225T>G 1226C>A 1227G>A) TCA402GAC (1234T>G 1235C>A 1236A>C) GTT403ATA (1237G>A 1239T>A) GAA404AAT (1240G>A 1242A>T) GGT405GGA (1245T>A) AAT407GAG (1249A>G 1251T>G) GTC408TAT (1252G>T 1253T>A 1254C>T) ATC409GTA (1255A>G 1257C>A) ATG410TTA (1258A>T 1260G>A) TTG411TTA (1263G>A) ATT412GAC (1264A>G 1265T>A 1266T>C) CTT413TAT (1267C>T 1268T>A) GGA414GAA (1271G>A) TTG415GTG (1273T>G) AAT416AAC (1278T>C) ATT417TGG (1279A>T 1280T>G 1281T>G) AGT418GAA (1282A>G 1283G>A 1284T>A) TTG419GTG (1285T>G) TAT420AGG (1288T>A 1289A>G 1290T>G) AAT421GGA (1291A>G 1292A>G 1293T>A) GAA422CTA (1294G>C 1295A>T) ATT423GTC (1297A>G 1299T>C) AAG424ATG (1301A>T) CGC425CAA (1304G>A 1305C>A) ACT426AAC (1307C>A 1308T>C) TTG427ATG (1309T>A) AAT428GAT (1312A>G) GTA429del (1315_1317delGTA) GAT430GGG (1319A>G 1320T>G) AGC431AAA (1322G>A 1323C>A) ATA432GTA (1324A>G) ATG434AGA (1331T>G 1332G>A) GTA435ATT (1333G>A 1335A>T) CTT436TTG (1336C>T 1338T>G) TTA438ATG (1342T>A 1344A>G) GAA440GAT (1350A>T) TTC441ACA (1351T>A 1352T>C 1353C>A) AGT442AAG (1355G>A 1356T>G) AGT443AAG (1358G>A 1359T>G) GTT445CTG (1363G>C 1365T>G) AAA446AGT (1367A>G 1368A>T) TCA447GCG (1369T>G 1371A>G) ATT448ATG (1374T>G) AGC449ATA (1376G>T 1377C>A) AGT450TTT (1378A>T 1379G>T) AAA451GAC (1381A>G 1383A>C) TAT453TTT (1388A>T) AAT454GAT (1390A>G) GTT455ACA (1393G>A 1394T>C 1395T>A) GAT456AGA (1396G>A 1397A>G 1398T>A) GAA457TAT (1399G>T 1401A>T) TTG458ATG (1402T>A) GAT459AGA (1405G>A 1406A>G 1407T>A) AAA460GAA (1408A>G) TTG461ACA (1411T>A 1412T>C 1413G>A) TCA464ACG (1420T>A 1422A>G) ATA465ACG (1424T>C 1425A>G) AAA466TCA (1426A>T 1427A>C) TCA467ACA (1429T>A) ACG468ACA (1434G>A) GAG469AAC (1435G>A 1437G>C) GAA470CAA (1438G>C) CTG471CTT (1443G>T) ATT472CGA (1444A>C 1445T>G 1446T>A) GAA473ACA (1447G>A 1448A>C) ATG474CTG (1450A>C) AAG475AAC (1455G>C) AAT476AAA (1458T>A) TCT477AGG (1459T>A 1460C>G 1461T>G) GGA478AAT (1462G>A 1463G>A 1464A>T) ACT479GAA (1465A>G 1466C>A 1467T>A) TTA480CTC (1468T>C 1470A>C) ACT481ATA (1472C>T 1473T>A) GAA482GAT (1476A>T) GAA483GAG (1479A>G) TTT484TAC (1481T>A 1482T>C) GAG485GAC (1485G>C) CTA486TTA (1486C>T) CTG487GAA (1489C>G 1490T>A 1491G>A) ATC488CTT (1492A>C 1494C>T) TCC489TCA (1497C>A) AAC490_GAT493del (1498_1509delAACTCAGAAGAT) GAC494GAT (1512C>T) AAT495GTT (1513A>G 1514A>T) TGA497TAA (1520G>A)
Proteins
1497100%150443.3%484 (95.8%)191 (37.8%)8/13/0/01
Protein mutations:
F9Y (56T>A) R12K (64C>A 65G>A 66T>A) R13K (68G>A 69A>G) T15N (74C>A) A16K (76G>A 77C>A 78T>G) R19S (85C>A 87G>T) R20L (88A>T 89G>T) L21V (91T>G 93A>G) C22L (94T>C 95G>T) N23K (99C>A) I24L (100A>C 102T>A) S28D (112T>G 113C>A) I29E (115A>G 116T>A 117T>A) C30W (120C>G) M31R (122T>G) V33A (128T>C 129T>A) D35V (134A>T 135T>G) A36T (136G>A 138G>A) I38Y (142A>T 143T>A) E44D (162A>T) I48Y (172A>T 173T>A 174A>T) A49T (175G>A 177T>A) D50N (178G>A) H53Y (187C>T) Y55R (193T>A 194A>G 195T>A) S58A (202T>G 204A>T) P60Y (208C>T 209C>A 210G>C) K64Q (220A>C 222A>G) V67S (229G>A 230T>G) N69Y (235A>T 237C>T) R70N (239G>A 240A>C) N76E (256A>G 258T>A) K82R (275A>G 276G>A) L83M (277C>A 279T>G) V86F (286G>T 288G>T) H88D (292C>G) P89V (295C>G 296C>T) I90V (298A>G 300T>A) D93E (309C>A) K94D (310A>G 312A>T) L95I (313T>A) Q96E (316C>G 318G>A) C97G (319T>G 321T>G) I98L (322A>C 324C>G) I99L (325A>C) D100T (328G>A 329A>C) L101M (331T>A) N103E (337A>G 339T>A) I104T (341T>C 342A>G) I105L (343A>T 345A>G) D110E (360T>A) V112L (364G>T 366A>G) I113V (367A>G 369T>G) R114N (371G>A 372A>T) E117I (379G>A 380A>T) R118N (383G>A 384A>C) M119S (385A>T 386T>C 387G>T) I120V (388A>G 390A>G) Q128E (412C>G) K130L (418A>T 419A>T 420A>G) I131L (421A>T 423T>A) L139M (445C>A 447C>G) N144Q (460A>C 462T>A) A146L (466G>T 467C>T 468T>G) A147T (469G>A 471A>T) F148I (472T>A 474T>A) K149N (477G>T) F150L (478T>C) D151del (481_483delGAT) N153D (487A>G) L155V (493C>G 495T>A) V158I (502G>A 504T>A) L161Y (512T>A 513A>C) E163D (519G>T) K164C (520A>T 521A>G 522A>C) S165M (523T>A 524C>T 525A>G) V166E (527T>A 528C>G) S167H (529A>C 530G>A) D168E (534T>A) I169N (536T>A 537A>C) Y170Q (538T>C 540T>A) A171T (541G>A 543T>A) Y173F (548A>T 549T>C) R174Q (550A>C 551G>A) I175F (553A>T) V176I (556G>A) F178L (562T>C 564T>A) I179L (565A>C) N180E (568A>G 570T>A) E181K (571G>A) F182Y (575T>A) I190R (599T>G 600T>A) T193H (607A>C 608C>A 609A>T) N197H (619A>C 621T>C) I200V (628A>G) E201I (631G>A 632A>T 633G>A) R203Q (637A>C 638G>A) N204Q (640A>C 642C>A) H205E (643C>G 645T>G) K208L (652A>T 653A>T) K209R (656A>G) Q212S (664C>T 665A>C) L213K (667T>A 668T>A) L216F (676C>T 678G>T) P217L (679C>T 680C>T) S219K (685T>A 686C>A) K220G (688A>G 689A>G 690A>G) L221K (691C>A 692T>A 693A>G) Q223R (697C>A 698A>G) I224L (700A>T 702T>G) Y225S (703T>A 704A>G) F226R (706T>A 707T>G 708T>G) T230S (718A>T 720T>A) K231del (721_723delAAA) E232D (726A>T) T233S (728C>G) V234L (730G>C 732G>T) I235M (735T>G) F236E (736T>G 737T>A 738T>A) N237D (739A>G) T238R (743C>G 744T>A) Y239H (745T>C) T240S (749C>G 750A>T) K241P (751A>C 752A>C) P243S (757C>T) G244L (760G>T 761G>T) R245M (764G>T 765A>G) S246Q (766T>C 767C>A) I247V (769A>G 771A>G) Y248V (772T>G 773A>T 774C>A) N250_V251insCISIH (780_781insTGCATCAGTATACAC) V251I (781G>A) T252N (785C>A) E253D (789A>T) F254C (791T>G) N255E (793A>G 795T>A) R257N (800G>A 801A>T) D258K (802G>A 804T>A) E259A (806A>C 807A>G) L260C (809T>G 810G>T) E261T (811G>A 812A>C) Y263I (817T>A 818A>T 819T>A) S264V (820T>G 821C>T) L266A (826T>G 827T>C 828A>T) K267R (830A>G) D269Y (835G>T) K270I (839A>T 840G>T) N271S (842A>G) K272_A276del (844_858delAAATTAATTGCTGCA) M277I (861G>T) T279N (866C>A 867G>C) K281S (871A>T 872A>C) R284E (880C>G 881G>A) F285H (883T>C 884T>A 885C>T) A287S (889G>A 890C>G) H288V (892C>G 893A>T 894T>G) D289S (895G>T 896A>C 897T>A) N290Q (898A>C 900T>A) N291R (902A>G 903T>A) F292C (905T>G) G293K (907G>A 908G>A 909A>G) R294L (910A>T 911G>T) L295F (915G>T) K296T (917A>C 918A>T) M297K (920T>A) T298Y (922A>T 923C>A 924A>T) I299K (926T>A) E301G (932A>G) L302I (934T>A 936G>C) G303V (938G>T) H304S (940C>T 941A>C 942T>A) H305R (943C>A 944A>G 945T>A) C306L (947G>T 948T>G) C306_Q307insV (948_949insGTG) Q307K (949C>A 951G>A) V311I (961G>A 963G>T) A312F (964G>T 965C>T 966A>T) N314S (971A>G 972T>C) P316E (976C>G 977C>A) G317S (979G>T 980G>C 981C>A) N318C (982A>T 983A>G 984T>C) S320L (989C>T 990C>A) D321N (991G>A 993T>C) I322V (994A>G 996C>A) Q323H (999G>T) Y324N (1000T>A) N329Q (1015A>C 1017T>G) K331N (1023A>C) K331_Y332insNH (1023_1024insAACCAT) F333K (1027T>A 1028T>A 1029T>A) L334V (1030C>G 1032T>G) S335W (1033A>T 1035T>G) K336E (1036A>G) I337del (1039_1041delATT) W339F (1046G>T 1047G>T) I341L (1051A>C) D343K (1057G>A 1059T>A) M344I (1062G>A) L347N (1069T>A 1070T>A 1071A>T) L348V (1072T>G 1074G>A) E350D (1080A>T) K353R (1088A>G) D354A (1091A>C 1092T>A) C355L (1093T>C 1094G>T) Y356V (1096T>G 1097A>T 1098T>G) V360G (1109T>G 1110T>A) V368Q (1132G>C 1133T>A 1134T>G) N370S (1138A>T 1139A>C 1140C>A) I371V (1141A>G 1143A>G) P373K (1147C>A 1148C>A 1149T>G) L374Y (1151T>A 1152A>T) K376P (1156A>C 1157A>C) R377D (1159A>G 1160G>A 1161A>T) I379F (1165A>T) W380L (1169G>T 1170G>A) S381I (1172G>T) L382C (1175T>G 1176G>T) F383K (1177T>A 1178T>A 1179T>A) N385E (1183A>G 1185T>A) H386K (1186C>A 1188C>A) M387W (1189A>T 1190T>G) D388N (1192G>A 1194T>C) Q389E (1195C>G) T390A (1198A>G 1200A>T) I391V (1201A>G 1203T>C) E393M (1207G>A 1208A>T 1209A>G) V394L (1210G>T 1212G>A) H397Y (1219C>T 1221C>T) M398L (1222A>C 1224G>A) S399E (1225T>G 1226C>A 1227G>A) S402D (1234T>G 1235C>A 1236A>C) V403I (1237G>A 1239T>A) E404N (1240G>A 1242A>T) N407E (1249A>G 1251T>G) V408Y (1252G>T 1253T>A 1254C>T) I409V (1255A>G 1257C>A) M410L (1258A>T 1260G>A) I412D (1264A>G 1265T>A 1266T>C) L413Y (1267C>T 1268T>A) G414E (1271G>A) L415V (1273T>G) I417W (1279A>T 1280T>G 1281T>G) S418E (1282A>G 1283G>A 1284T>A) L419V (1285T>G) Y420R (1288T>A 1289A>G 1290T>G) N421G (1291A>G 1292A>G 1293T>A) E422L (1294G>C 1295A>T) I423V (1297A>G 1299T>C) K424M (1301A>T) R425Q (1304G>A 1305C>A) T426N (1307C>A 1308T>C) L427M (1309T>A) N428D (1312A>G) V429del (1315_1317delGTA) D430G (1319A>G 1320T>G) S431K (1322G>A 1323C>A) I432V (1324A>G) M434R (1331T>G 1332G>A) V435I (1333G>A 1335A>T) L438M (1342T>A 1344A>G) E440D (1350A>T) F441T (1351T>A 1352T>C 1353C>A) S442K (1355G>A 1356T>G) S443K (1358G>A 1359T>G) V445L (1363G>C 1365T>G) K446S (1367A>G 1368A>T) S447A (1369T>G 1371A>G) I448M (1374T>G) S449I (1376G>T 1377C>A) S450F (1378A>T 1379G>T) K451D (1381A>G 1383A>C) Y453F (1388A>T) N454D (1390A>G) V455T (1393G>A 1394T>C 1395T>A) D456R (1396G>A 1397A>G 1398T>A) E457Y (1399G>T 1401A>T) L458M (1402T>A) D459R (1405G>A 1406A>G 1407T>A) K460E (1408A>G) L461T (1411T>A 1412T>C 1413G>A) S464T (1420T>A 1422A>G) I465T (1424T>C 1425A>G) K466S (1426A>T 1427A>C) S467T (1429T>A) E469N (1435G>A 1437G>C) E470Q (1438G>C) I472R (1444A>C 1445T>G 1446T>A) E473T (1447G>A 1448A>C) M474L (1450A>C) K475N (1455G>C) N476K (1458T>A) S477R (1459T>A 1460C>G 1461T>G) G478N (1462G>A 1463G>A 1464A>T) T479E (1465A>G 1466C>A 1467T>A) T481I (1472C>T 1473T>A) E482D (1476A>T) F484Y (1481T>A 1482T>C) E485D (1485G>C) L487E (1489C>G 1490T>A 1491G>A) I488L (1492A>C 1494C>T) N490_D493del (1498_1509delAACTCAGAAGAT) N495V (1513A>G 1514A>T)
Codon mutations:
GCT2GCG (36T>G) GAT6GAC (48T>C) GCA7GCT (51A>T) TGC8TGT (54C>T) TTT9TAT (56T>A) CGT12AAA (64C>A 65G>A 66T>A) AGA13AAG (68G>A 69A>G) TTA14TTG (72A>G) ACT15AAT (74C>A) GCT16AAG (76G>A 77C>A 78T>G) CGG19AGT (85C>A 87G>T) AGA20TTA (88A>T 89G>T) TTA21GTG (91T>G 93A>G) TGC22CTC (94T>C 95G>T) AAC23AAA (99C>A) ATT24CTA (100A>C 102T>A) GGT25GGA (105T>A) TCT28GAT (112T>G 113C>A) ATT29GAA (115A>G 116T>A 117T>A) TGC30TGG (120C>G) ATG31AGG (122T>G) GTT33GCA (128T>C 129T>A) CCT34CCA (132T>A) GAT35GTG (134A>T 135T>G) GCG36ACA (136G>A 138G>A) ATT38TAT (142A>T 143T>A) AAG39AAA (147G>A) GGG40GGA (150G>A) GAA44GAT (162A>T) ATA48TAT (172A>T 173T>A 174A>T) GCT49ACA (175G>A 177T>A) GAT50AAT (178G>A) TTA51TTG (183A>G) ACC52ACA (186C>A) CAT53TAT (187C>T) TGT54TGC (192T>C) TAT55AGA (193T>A 194A>G 195T>A) GGT56GGG (198T>G) TCA58GCT (202T>G 204A>T) TTG59CTA (205T>C 207G>A) CCG60TAC (208C>T 209C>A 210G>C) GTT62GTA (216T>A) TGC63TGT (219C>T) AAA64CAG (220A>C 222A>G) TGT66TGC (228T>C) GTT67AGT (229G>A 230T>G) AAC69TAT (235A>T 237C>T) AGA70AAC (239G>A 240A>C) AGA71AGG (243A>G) TGC72TGT (246C>T) CTT74TTA (250C>T 252T>A) GAC75GAT (255C>T) AAT76GAA (256A>G 258T>A) CCT78CCC (264T>C) CTT81CTG (273T>G) AAG82AGA (275A>G 276G>A) CTT83ATG (277C>A 279T>G) AGA84CGA (280A>C) ACT85ACA (285T>A) GTG86TTT (286G>T 288G>T) CAT88GAT (292C>G) CCA89GTA (295C>G 296C>T) ATT90GTA (298A>G 300T>A) ACC91ACA (303C>A) AAA92AAG (306A>G) GAC93GAA (309C>A) AAA94GAT (310A>G 312A>T) TTA95ATA (313T>A) CAG96GAA (316C>G 318G>A) TGT97GGG (319T>G 321T>G) ATC98CTG (322A>C 324C>G) ATA99CTA (325A>C) GAC100ACC (328G>A 329A>C) TTG101ATG (331T>A) TAC102TAT (336C>T) AAT103GAA (337A>G 339T>A) ATA104ACG (341T>C 342A>G) ATA105TTG (343A>T 345A>G) ATT108ATA (354T>A) GAT110GAA (360T>A) AAA111AAG (363A>G) GTA112TTG (364G>T 366A>G) ATT113GTG (367A>G 369T>G) AGA114AAT (371G>A 372A>T) TTT116TTC (378T>C) GAA117ATA (379G>A 380A>T) AGA118AAC (383G>A 384A>C) ATG119TCT (385A>T 386T>C 387G>T) ATA120GTG (388A>G 390A>G) AAG121AAA (393G>A) CAA122CAG (396A>G) AGA123CGT (397A>C 399A>T) AAA124AAG (402A>G) CAA128GAA (412C>G) AAA130TTG (418A>T 419A>T 420A>G) ATT131TTA (421A>T 423T>A) CAT136CAC (438T>C) TTG137TTA (441G>A) CTG138CTA (444G>A) CTC139ATG (445C>A 447C>G) ATT141ATA (453T>A) AAT144CAA (460A>C 462T>A) GCT145GCA (465T>A) GCT146TTG (466G>T 467C>T 468T>G) GCA147ACT (469G>A 471A>T) TTT148ATA (472T>A 474T>A) AAG149AAT (477G>T) TTT150CTT (478T>C) GAT151del (481_483delGAT) GAA152GAG (486A>G) AAT153GAT (487A>G) CTT155GTA (493C>G 495T>A) GTT158ATA (502G>A 504T>A) GGG160GGA (510G>A) TTA161TAC (512T>A 513A>C) GAG163GAT (519G>T) AAA164TGC (520A>T 521A>G 522A>C) TCA165ATG (523T>A 524C>T 525A>G) GTC166GAG (527T>A 528C>G) AGT167CAT (529A>C 530G>A) GAT168GAA (534T>A) ATA169AAC (536T>A 537A>C) TAT170CAA (538T>C 540T>A) GCT171ACA (541G>A 543T>A) TAT173TTC (548A>T 549T>C) AGA174CAA (550A>C 551G>A) ATT175TTT (553A>T) GTT176ATT (556G>A) AAC177AAT (561C>T) TTT178CTA (562T>C 564T>A) ATA179CTA (565A>C) AAT180GAA (568A>G 570T>A) GAA181AAA (571G>A) TTT182TAT (575T>A) TTA185TTG (585A>G) TTG186CTA (586T>C 588G>A) CTT187CTA (591T>A) ATT190AGA (599T>G 600T>A) AAC191AAT (603C>T) TTT192TTC (606T>C) ACA193CAT (607A>C 608C>A 609A>T) TCC196TCA (618C>A) AAT197CAC (619A>C 621T>C) CTA198TTA (622C>T) ATA200GTA (628A>G) GAG201ATA (631G>A 632A>T 633G>A) AGA203CAA (637A>C 638G>A) AAC204CAA (640A>C 642C>A) CAT205GAG (643C>G 645T>G) GCA207GCT (651A>T) AAG208TTG (652A>T 653A>T) AAA209AGA (656A>G) TAC210TAT (660C>T) TTC211TTT (663C>T) CAA212TCA (664C>T 665A>C) TTA213AAA (667T>A 668T>A) CTG216TTT (676C>T 678G>T) CCA217TTA (679C>T 680C>T) TCA218AGT (682T>A 683C>G 684A>T) TCA219AAA (685T>A 686C>A) AAA220GGG (688A>G 689A>G 690A>G) CTA221AAG (691C>A 692T>A 693A>G) CAA223AGA (697C>A 698A>G) ATT224TTG (700A>T 702T>G) TAC225AGC (703T>A 704A>G) TTT226AGG (706T>A 707T>G 708T>G) TCA227AGT (709T>A 710C>G 711A>T) TTT229TTC (717T>C) ACT230TCA (718A>T 720T>A) AAA231del (721_723delAAA) GAA232GAT (726A>T) ACT233AGT (728C>G) GTG234CTT (730G>C 732G>T) ATT235ATG (735T>G) TTT236GAA (736T>G 737T>A 738T>A) AAT237GAT (739A>G) ACT238AGA (743C>G 744T>A) TAT239CAT (745T>C) ACA240AGT (749C>G 750A>T) AAA241CCA (751A>C 752A>C) ACG242ACA (756G>A) CCA243TCA (757C>T) GGA244TTA (760G>T 761G>T) AGA245ATG (764G>T 765A>G) TCA246CAA (766T>C 767C>A) ATA247GTG (769A>G 771A>G) TAC248GTA (772T>G 773A>T 774C>A) AGA249CGT (775A>C 777A>T) AAT250AAC (780T>C) AAT250_GTA251insTGCATCAGTATACAC (780_781insTGCATCAGTATACAC) GTA251ATA (781G>A) ACT252AAT (785C>A) GAA253GAT (789A>T) TTT254TGT (791T>G) AAT255GAA (793A>G 795T>A) AGA257AAT (800G>A 801A>T) GAT258AAA (802G>A 804T>A) GAA259GCG (806A>C 807A>G) TTG260TGT (809T>G 810G>T) GAG261ACG (811G>A 812A>C) TAT263ATA (817T>A 818A>T 819T>A) TCT264GTT (820T>G 821C>T) TTA266GCT (826T>G 827T>C 828A>T) AAA267AGA (830A>G) GAT269TAT (835G>T) AAG270ATT (839A>T 840G>T) AAT271AGT (842A>G) AAA272_GCA276del (844_858delAAATTAATTGCTGCA) ATG277ATT (861G>T) ACG279AAC (866C>A 867G>C) AGT280TCA (868A>T 869G>C 870T>A) AAG281TCG (871A>T 872A>C) CGG284GAG (880C>G 881G>A) TTC285CAT (883T>C 884T>A 885C>T) GCT287AGT (889G>A 890C>G) CAT288GTG (892C>G 893A>T 894T>G) GAT289TCA (895G>T 896A>C 897T>A) AAT290CAA (898A>C 900T>A) AAT291AGA (902A>G 903T>A) TTT292TGT (905T>G) GGA293AAG (907G>A 908G>A 909A>G) AGG294TTG (910A>T 911G>T) TTG295TTT (915G>T) AAA296ACT (917A>C 918A>T) ATG297AAG (920T>A) ACA298TAT (922A>T 923C>A 924A>T) ATA299AAA (926T>A) GAG301GGG (932A>G) TTG302ATC (934T>A 936G>C) GGA303GTA (938G>T) CAT304TCA (940C>T 941A>C 942T>A) CAT305AGA (943C>A 944A>G 945T>A) TGT306TTG (947G>T 948T>G) TGT306_CAG307insGTG (948_949insGTG) CAG307AAA (949C>A 951G>A) CCT308CCG (954T>G) AAC309AAT (957C>T) GTG311ATT (961G>A 963G>T) GCA312TTT (964G>T 965C>T 966A>T) TCT313TCC (969T>C) AAT314AGC (971A>G 972T>C) CAC315CAT (975C>T) CCA316GAA (976C>G 977C>A) GGC317TCA (979G>T 980G>C 981C>A) AAT318TGC (982A>T 983A>G 984T>C) GCT319GCA (987T>A) TCC320TTA (989C>T 990C>A) GAT321AAC (991G>A 993T>C) ATC322GTA (994A>G 996C>A) CAG323CAT (999G>T) TAC324AAC (1000T>A) AAT329CAG (1015A>C 1017T>G) ATA330ATC (1020A>C) AAA331AAC (1023A>C) AAA331_TAT332insAACCAT (1023_1024insAACCAT) TAT332TAC (1026T>C) TTT333AAA (1027T>A 1028T>A 1029T>A) CTT334GTG (1030C>G 1032T>G) AGT335TGG (1033A>T 1035T>G) AAA336GAA (1036A>G) ATT337del (1039_1041delATT) TGG339TTT (1046G>T 1047G>T) CGG340AGA (1048C>A 1050G>A) ATT341CTT (1051A>C) CGT342AGG (1054C>A 1056T>G) GAT343AAA (1057G>A 1059T>A) ATG344ATA (1062G>A) TTA347AAT (1069T>A 1070T>A 1071A>T) TTG348GTA (1072T>G 1074G>A) GAA350GAT (1080A>T) ATT352ATC (1086T>C) AAG353AGG (1088A>G) GAT354GCA (1091A>C 1092T>A) TGT355CTT (1093T>C 1094G>T) TAT356GTG (1096T>G 1097A>T 1098T>G) AGT358TCG (1102A>T 1103G>C 1104T>G) GTT360GGA (1109T>G 1110T>A) AAC361AAT (1113C>T) AGT366TCA (1126A>T 1127G>C 1128T>A) TCT367TCC (1131T>C) GTT368CAG (1132G>C 1133T>A 1134T>G) AAC370TCA (1138A>T 1139A>C 1140C>A) ATA371GTG (1141A>G 1143A>G) CCT373AAG (1147C>A 1148C>A 1149T>G) TTA374TAT (1151T>A 1152A>T) ATT375ATA (1155T>A) AAA376CCA (1156A>C 1157A>C) AGA377GAT (1159A>G 1160G>A 1161A>T) ATT379TTT (1165A>T) TGG380TTA (1169G>T 1170G>A) AGT381ATT (1172G>T) TTG382TGT (1175T>G 1176G>T) TTT383AAA (1177T>A 1178T>A 1179T>A) ACT384ACG (1182T>G) AAT385GAA (1183A>G 1185T>A) CAC386AAA (1186C>A 1188C>A) ATG387TGG (1189A>T 1190T>G) GAT388AAC (1192G>A 1194T>C) CAA389GAA (1195C>G) ACA390GCT (1198A>G 1200A>T) ATT391GTC (1201A>G 1203T>C) GAA393ATG (1207G>A 1208A>T 1209A>G) GTG394TTA (1210G>T 1212G>A) CAC397TAT (1219C>T 1221C>T) ATG398CTA (1222A>C 1224G>A) TCG399GAA (1225T>G 1226C>A 1227G>A) TCA402GAC (1234T>G 1235C>A 1236A>C) GTT403ATA (1237G>A 1239T>A) GAA404AAT (1240G>A 1242A>T) GGT405GGA (1245T>A) AAT407GAG (1249A>G 1251T>G) GTC408TAT (1252G>T 1253T>A 1254C>T) ATC409GTA (1255A>G 1257C>A) ATG410TTA (1258A>T 1260G>A) TTG411TTA (1263G>A) ATT412GAC (1264A>G 1265T>A 1266T>C) CTT413TAT (1267C>T 1268T>A) GGA414GAA (1271G>A) TTG415GTG (1273T>G) AAT416AAC (1278T>C) ATT417TGG (1279A>T 1280T>G 1281T>G) AGT418GAA (1282A>G 1283G>A 1284T>A) TTG419GTG (1285T>G) TAT420AGG (1288T>A 1289A>G 1290T>G) AAT421GGA (1291A>G 1292A>G 1293T>A) GAA422CTA (1294G>C 1295A>T) ATT423GTC (1297A>G 1299T>C) AAG424ATG (1301A>T) CGC425CAA (1304G>A 1305C>A) ACT426AAC (1307C>A 1308T>C) TTG427ATG (1309T>A) AAT428GAT (1312A>G) GTA429del (1315_1317delGTA) GAT430GGG (1319A>G 1320T>G) AGC431AAA (1322G>A 1323C>A) ATA432GTA (1324A>G) ATG434AGA (1331T>G 1332G>A) GTA435ATT (1333G>A 1335A>T) CTT436TTG (1336C>T 1338T>G) TTA438ATG (1342T>A 1344A>G) GAA440GAT (1350A>T) TTC441ACA (1351T>A 1352T>C 1353C>A) AGT442AAG (1355G>A 1356T>G) AGT443AAG (1358G>A 1359T>G) GTT445CTG (1363G>C 1365T>G) AAA446AGT (1367A>G 1368A>T) TCA447GCG (1369T>G 1371A>G) ATT448ATG (1374T>G) AGC449ATA (1376G>T 1377C>A) AGT450TTT (1378A>T 1379G>T) AAA451GAC (1381A>G 1383A>C) TAT453TTT (1388A>T) AAT454GAT (1390A>G) GTT455ACA (1393G>A 1394T>C 1395T>A) GAT456AGA (1396G>A 1397A>G 1398T>A) GAA457TAT (1399G>T 1401A>T) TTG458ATG (1402T>A) GAT459AGA (1405G>A 1406A>G 1407T>A) AAA460GAA (1408A>G) TTG461ACA (1411T>A 1412T>C 1413G>A) TCA464ACG (1420T>A 1422A>G) ATA465ACG (1424T>C 1425A>G) AAA466TCA (1426A>T 1427A>C) TCA467ACA (1429T>A) ACG468ACA (1434G>A) GAG469AAC (1435G>A 1437G>C) GAA470CAA (1438G>C) CTG471CTT (1443G>T) ATT472CGA (1444A>C 1445T>G 1446T>A) GAA473ACA (1447G>A 1448A>C) ATG474CTG (1450A>C) AAG475AAC (1455G>C) AAT476AAA (1458T>A) TCT477AGG (1459T>A 1460C>G 1461T>G) GGA478AAT (1462G>A 1463G>A 1464A>T) ACT479GAA (1465A>G 1466C>A 1467T>A) TTA480CTC (1468T>C 1470A>C) ACT481ATA (1472C>T 1473T>A) GAA482GAT (1476A>T) GAA483GAG (1479A>G) TTT484TAC (1481T>A 1482T>C) GAG485GAC (1485G>C) CTA486TTA (1486C>T) CTG487GAA (1489C>G 1490T>A 1491G>A) ATC488CTT (1492A>C 1494C>T) TCC489TCA (1497C>A) AAC490_GAT493del (1498_1509delAACTCAGAAGAT) GAC494GAT (1512C>T) AAT495GTT (1513A>G 1514A>T) TGA497TAA (1520G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43