Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Rotavirus A (segment 3)

Assembly

2591 (1 contig(s))
8528.2
203956
13160.15 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Rotavirus A (Taxonomy ID: 28875)
77.7692
84.8086
1
1

Alignment

segment 3
2878.0 (NT) + 5089.0 (AA) = 7967.0
72.7381
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT12591100%287855.5%2591 (100%)2015 (77.8%)0/0
Mutations:
5T>A 14G>A 17C>T 18C>T 59C>T 73C>T 85A>G 88G>A 94A>G 104G>A 106C>A 109C>T 110G>A 111T>C 121T>A 124A>C 131A>G 132G>A 133T>C 136T>C 139A>G 145T>A 154C>T 163T>C 166G>T 169C>A 178T>A 181A>G 184C>T 185T>C 197A>G 202A>G 208A>G 209G>C 217A>G 223G>A 226A>T 229A>T 238A>G 239A>G 241T>A 243C>A 244T>A 245T>A 250A>G 251T>G 252C>A 253A>G 254C>A 256T>G 259A>T 265A>G 268C>T 271A>G 272T>C 277A>T 280G>A 283T>C 286T>C 292T>A 302G>A 303A>T 304A>T 305C>G 306T>A 307T>C 310T>C 313A>T 314A>G 316A>T 319T>C 320T>C 322A>T 337T>C 343C>T 352A>G 355T>A 358A>G 361A>T 364C>T 374A>G 379A>T 391T>A 397A>C 404C>T 409T>A 419T>C 421A>G 424A>G 433T>A 439T>C 444G>A 448A>C 451T>A 457A>G 460T>C 472A>T 487C>T 490T>A 493A>T 496A>G 499T>C 506C>G 507T>C 514T>A 520C>T 530G>A 532A>T 534C>A 535G>A 553T>C 556G>A 557T>C 559A>T 565G>A 568A>C 571G>A 577A>G 583T>G 589G>A 590T>C 595T>A 601T>G 610T>G 613C>T 614A>C 616A>T 619A>G 622T>C 625G>A 628T>C 631G>A 637C>T 638C>A 639C>A 640A>G 641T>A 643A>G 644T>C 647T>G 649G>A 650A>T 651A>C 655A>T 658T>C 660A>G 661G>T 663A>G 664T>A 670G>T 679T>A 682G>A 683C>A 685T>A 703A>T 707T>C 710A>G 713T>C 715T>C 718A>G 719A>T 721T>A 727A>G 742T>A 743G>C 745G>C 754A>T 763T>G 769A>G 770T>C 772A>T 781A>G 782C>A 788T>C 790A>C 796A>G 799G>A 800A>C 805T>G 808G>A 814T>C 829A>G 832T>C 838G>A 844T>A 845C>T 847T>A 851G>A 853A>T 854A>T 856T>A 859T>C 860T>C 862T>A 869A>G 871T>C 872T>A 874A>G 878A>C 880A>T 881A>G 882G>A 883T>G 886A>G 892T>A 895A>T 898T>C 902A>G 904C>A 910T>A 913T>A 916A>T 919T>A 929T>C 931T>C 934C>T 937T>C 943T>A 946T>C 949C>T 950G>A 955T>A 956T>A 957T>A 958C>G 964A>G 967T>A 973T>C 982C>T 991T>C 994A>T 995T>G 996C>A 997A>T 998A>T 1000C>G 1006C>T 1015A>G 1020T>A 1026A>G 1030T>C 1033G>A 1035A>C 1036G>C 1042G>T 1045G>A 1051C>T 1054A>G 1060G>A 1064A>G 1066T>A 1073A>C 1078C>G 1084G>A 1086G>A 1087C>A 1091G>A 1093T>A 1103A>G 1104A>C 1105A>G 1111A>G 1116C>T 1117A>T 1120A>G 1126A>G 1135T>A 1145G>A 1147C>T 1150A>C 1153T>A 1156T>C 1157G>A 1162T>C 1166C>T 1167G>C 1168A>C 1171G>A 1174T>A 1180G>T 1183G>A 1186G>A 1198G>A 1204A>T 1207T>C 1216G>A 1222G>A 1228T>A 1231A>T 1234T>A 1238T>C 1243G>A 1246C>T 1249C>T 1258G>A 1264A>T 1267A>G 1283T>A 1286C>A 1288A>G 1293C>T 1294T>A 1302T>C 1303A>T 1305C>A 1306T>A 1309C>T 1314G>A 1315G>A 1316A>C 1318G>A 1321C>T 1324T>A 1327T>G 1330A>G 1347T>A 1351A>T 1358A>G 1363A>T 1369A>G 1372T>C 1378T>C 1381T>A 1390A>G 1397G>T 1399A>G 1403G>A 1404T>C 1405A>G 1406C>T 1408G>A 1410A>G 1411T>G 1412G>A 1415A>G 1416G>A 1417T>A 1421A>G 1423T>G 1426A>T 1429G>A 1435T>C 1439T>C 1441A>G 1444A>T 1447T>C 1450T>C 1463T>G 1464C>A 1465A>G 1468A>T 1471A>G 1474T>A 1480A>G 1481A>G 1486T>C 1495A>G 1496C>A 1498A>T 1499T>G 1501T>G 1502C>T 1513T>G 1516A>G 1528G>A 1534G>A 1549T>G 1555C>T 1559A>G 1564C>T 1570T>C 1576C>T 1580C>T 1582T>G 1588C>T 1591C>T 1594T>C 1597T>A 1600C>G 1603A>T 1606A>G 1607G>T 1609T>A 1615T>C 1618T>G 1624C>T 1627C>T 1639A>T 1640C>A 1642C>G 1648T>C 1651G>A 1654T>A 1660G>A 1666A>T 1678A>T 1681G>A 1691T>C 1693A>G 1702A>G 1705T>C 1711A>T 1712G>A 1717G>A 1722A>T 1741T>G 1747C>T 1749C>T 1750C>G 1759G>A 1763A>C 1765A>G 1771C>T 1777T>A 1778A>C 1780G>A 1792T>A 1795T>G 1813T>C 1816A>T 1828G>A 1831C>A 1847C>T 1852T>A 1858T>G 1862A>G 1864A>T 1873A>G 1879A>T 1882T>A 1888A>G 1891T>C 1897T>A 1900A>G 1927T>C 1936A>G 1939C>A 1945T>A 1948T>C 1955T>G 1957T>A 1959T>C 1961G>A 1963T>C 1966A>G 1968T>C 1971A>G 1972T>C 1975A>T 1981A>C 1984A>C 1986A>G 1987G>A 1990T>C 1998T>A 1999C>T 2002A>T 2005A>G 2011A>G 2014A>G 2020T>C 2032A>G 2038A>G 2044T>C 2047T>A 2049C>A 2056G>A 2062C>T 2068T>A 2072T>C 2074G>A 2083A>G 2086C>T 2095G>A 2096A>G 2101T>C 2109C>A 2113A>G 2116T>C 2131T>C 2134T>C 2143T>C 2152C>T 2158A>T 2159C>A 2161A>G 2164T>C 2166G>A 2180A>G 2195A>G 2204T>C 2206A>T 2209C>A 2212C>T 2215A>T 2222C>A 2230T>A 2234A>T 2235A>C 2245A>G 2248C>T 2251G>A 2252A>G 2254T>A 2256A>C 2257C>A 2260A>T 2261C>T 2268T>A 2269A>G 2270A>T 2272G>T 2275G>A 2277A>G 2284A>G 2289A>G 2297A>G 2299T>A 2302G>C 2305C>A 2314A>G 2323A>G 2331G>A 2338C>T 2341A>G 2347T>C 2350T>A 2356A>T 2359A>G 2365T>A 2371C>T 2378A>C 2380C>T 2383T>C 2386C>T 2388T>C 2392T>C 2399A>G 2401T>G 2407A>T 2410T>G 2416C>A 2422C>A 2452C>T 2457A>G 2463T>A 2466G>A 2468A>G 2469C>T 2473A>G 2476G>A 2482G>T 2484C>G 2488T>G 2489A>C 2490A>G 2494A>G 2495C>A 2497A>C 2500T>A 2501A>G 2503A>C 2505C>T 2506C>T 2509T>A 2515A>G 2518A>G 2521G>A 2524T>A 2527G>A 2530T>C 2542T>C 2549G>A 2550T>C 2577A>G 2582T>C
CDS
1836100%508988.2%836 (100%)709 (84.8%)0/0/0/01
Protein mutations:
V19I (104G>A 106C>A) V21T (110G>A 111T>C) D24E (121T>A) S28D (131A>G 132G>A 133T>C) I50V (197A>G) E54Q (209G>C) I64V (239A>G 241T>A) A65E (243C>A 244T>A) L66I (245T>A) S68E (251T>G 252C>A 253A>G) L69M (254C>A 256T>G) E70D (259A>T) E85I (302G>A 303A>T 304A>T) L86D (305C>G 306T>A 307T>C) I89V (314A>G 316A>T) I109V (374A>G) E116D (397A>C) S132N (444G>A) E133D (448A>C) L153A (506C>G 507T>C) E161N (530G>A 532A>T) A162E (534C>A 535G>A) M169I (556G>A) P197K (638C>A 639C>A 640A>G) S198T (641T>A 643A>G) L200V (647T>G 649G>A) K201S (650A>T 651A>C) E202D (655A>T) K204S (660A>G 661G>T) N205R (663A>G 664T>A) N221D (710A>G) Y222H (713T>C 715T>C) T224S (719A>T 721T>A) A232P (743G>C 745G>C) I251L (800A>C) A268T (851G>A 853A>T) I269L (854A>T 856T>A) Y271Q (860T>C 862T>A) N274D (869A>G 871T>C) L275M (872T>A 874A>G) K277H (878A>C 880A>T) S278E (881A>G 882G>A 883T>G) I285V (902A>G 904C>A) Y294H (929T>C 931T>C) H298Q (943T>A) D301N (950G>A) F302L (955T>A) F303K (956T>A 957T>A 958C>G) S316D (995T>G 996C>A 997A>T) I317L (998A>T 1000C>G) F324Y (1020T>A) N326S (1026A>G) K329T (1035A>C 1036G>C) I339V (1064A>G 1066T>A) G346E (1086G>A 1087C>A) A348T (1091G>A 1093T>A) K352A (1103A>G 1104A>C 1105A>G) T356I (1116C>T 1117A>T) D366N (1145G>A 1147C>T) E370K (1157G>A) R373S (1166C>T 1167G>C 1168A>C) L412I (1283T>A) L413M (1286C>A 1288A>G) T415I (1293C>T 1294T>A) L418S (1302T>C 1303A>T) T419K (1305C>A 1306T>A) R422K (1314G>A 1315G>A) F433Y (1347T>A) I437V (1358A>G) V450L (1397G>T 1399A>G) V452T (1403G>A 1404T>C 1405A>G) N454R (1410A>G 1411T>G) D455N (1412G>A) S456E (1415A>G 1416G>A 1417T>A) I458V (1421A>G 1423T>G) S472E (1463T>G 1464C>A 1465A>G) E473D (1468A>T) I478V (1481A>G) Q483N (1496C>A 1498A>T) S484A (1499T>G 1501T>G) N504D (1559A>G) D516E (1597T>A) K518N (1603A>T) A520S (1607G>T 1609T>A) L531M (1640C>A 1642C>G) D555N (1712G>A) Y558F (1722A>T) T567M (1749C>T 1750C>G) I605V (1862A>G 1864A>T) S636A (1955T>G 1957T>A) I637T (1959T>C) D638N (1961G>A 1963T>C) V640A (1968T>C) D641G (1971A>G 1972T>C) K646R (1986A>G 1987G>A) L650H (1998T>A 1999C>T) T667K (2049C>A) N683D (2096A>G) T687K (2109C>A) Q704K (2159C>A 2161A>G) R706K (2166G>A) K711E (2180A>G) I716V (2195A>G) H725N (2222C>A) N729S (2234A>T 2235A>C) I735V (2252A>G 2254T>A) D736A (2256A>C 2257C>A) I740K (2268T>A 2269A>G) M741F (2270A>T 2272G>T) N743S (2277A>G) K747R (2289A>G) I750V (2297A>G 2299T>A) G761E (2331G>A) I777L (2378A>C 2380C>T) V780A (2388T>C) N784E (2399A>G 2401T>G) N803S (2457A>G) M805K (2463T>A) R806K (2466G>A) T807V (2468A>G 2469C>T) E811D (2482G>T) T812S (2484C>G) K814R (2489A>C 2490A>G) Q816N (2495C>A 2497A>C) K818D (2501A>G 2503A>C) S819F (2505C>T 2506C>T) V834T (2549G>A 2550T>C)
Codon mutations:
CTA4TTA (59C>T) CAC8CAT (73C>T) CAA12CAG (85A>G) GTG13GTA (88G>A) GCA15GCG (94A>G) GTC19ATA (104G>A 106C>A) TAC20TAT (109C>T) GTT21ACT (110G>A 111T>C) GAT24GAA (121T>A) ACA25ACC (124A>C) AGT28GAC (131A>G 132G>A 133T>C) TAT29TAC (136T>C) GAA30GAG (139A>G) GCT32GCA (145T>A) ATC35ATT (154C>T) CTT38CTC (163T>C) ACG39ACT (166G>T) ACC40ACA (169C>A) ATT43ATA (178T>A) TTA44TTG (181A>G) TAC45TAT (184C>T) TTA46CTA (185T>C) ATT50GTT (197A>G) AAA51AAG (202A>G) TTA53TTG (208A>G) GAA54CAA (209G>C) TTA56TTG (217A>G) AAG58AAA (223G>A) TCA59TCT (226A>T) GGA60GGT (229A>T) GCA63GCG (238A>G) ATT64GTA (239A>G 241T>A) GCT65GAA (243C>A 244T>A) TTA66ATA (245T>A) CAA67CAG (250A>G) TCA68GAG (251T>G 252C>A 253A>G) CTT69ATG (254C>A 256T>G) GAA70GAT (259A>T) TTA72TTG (265A>G) TTC73TTT (268C>T) ACA74ACG (271A>G) TTA75CTA (272T>C) ATA76ATT (277A>T) AGG77AGA (280G>A) TGT78TGC (283T>C) AAT79AAC (286T>C) ACT81ACA (292T>A) GAA85ATT (302G>A 303A>T 304A>T) CTT86GAC (305C>G 306T>A 307T>C) GAT87GAC (310T>C) ATA88ATT (313A>T) ATA89GTT (314A>G 316A>T) TAT90TAC (319T>C) TTA91CTT (320T>C 322A>T) TAT96TAC (337T>C) ACC98ACT (343C>T) GAA101GAG (352A>G) ATT102ATA (355T>A) AGA103AGG (358A>G) ACA104ACT (361A>T) GAC105GAT (364C>T) ATA109GTA (374A>G) ACA110ACT (379A>T) ATT114ATA (391T>A) GAA116GAC (397A>C) CTA119TTA (404C>T) CCT120CCA (409T>A) TTA124CTG (419T>C 421A>G) ACA125ACG (424A>G) GGT128GGA (433T>A) AAT130AAC (439T>C) AGT132AAT (444G>A) GAA133GAC (448A>C) ACT134ACA (451T>A) GGA136GGG (457A>G) CAT137CAC (460T>C) TCA141TCT (472A>T) AAC146AAT (487C>T) GCT147GCA (490T>A) GCA148GCT (493A>T) ACA149ACG (496A>G) GAT150GAC (499T>C) CTA153GCA (506C>G 507T>C) ATT155ATA (514T>A) TAC157TAT (520C>T) GAA161AAT (530G>A 532A>T) GCG162GAA (534C>A 535G>A) TTT168TTC (553T>C) ATG169ATA (556G>A) TTA170CTT (557T>C 559A>T) AAG172AAA (565G>A) ATA173ATC (568A>C) AAG174AAA (571G>A) AGA176AGG (577A>G) ACT178ACG (583T>G) TCG180TCA (589G>A) TTG181CTG (590T>C) CCT182CCA (595T>A) GCT184GCG (601T>G) TCT187TCG (610T>G) AAC188AAT (613C>T) AGA189CGT (614A>C 616A>T) GTA190GTG (619A>G) TTT191TTC (622T>C) AGG192AGA (625G>A) GAT193GAC (628T>C) AAG194AAA (631G>A) TTC196TTT (637C>T) CCA197AAG (638C>A 639C>A 640A>G) TCA198ACG (641T>A 643A>G) TTA199CTA (644T>C) TTG200GTA (647T>G 649G>A) AAA201TCA (650A>T 651A>C) GAA202GAT (655A>T) CAT203CAC (658T>C) AAG204AGT (660A>G 661G>T) AAT205AGA (663A>G 664T>A) GTG207GTT (670G>T) GGT210GGA (679T>A) CCG211CCA (682G>A) CGT212AGA (683C>A 685T>A) ACA218ACT (703A>T) TTA220CTA (707T>C) AAT221GAT (710A>G) TAT222CAC (713T>C 715T>C) CCA223CCG (718A>G) ACT224TCA (719A>T 721T>A) AAA226AAG (727A>G) GGT231GGA (742T>A) GCG232CCC (743G>C 745G>C) GTA235GTT (754A>T) ACT238ACG (763T>G) AAA240AAG (769A>G) TTA241CTT (770T>C 772A>T) GAA244GAG (781A>G) CGA245AGA (782C>A) TTA247CTC (788T>C 790A>C) AAA249AAG (796A>G) AGG250AGA (799G>A) ATA251CTA (800A>C) TCT252TCG (805T>G) CAG253CAA (808G>A) GAT255GAC (814T>C) AAA260AAG (829A>G) AAT261AAC (832T>C) CTG263CTA (838G>A) GTT265GTA (844T>A) CTT266TTA (845C>T 847T>A) GCA268ACT (851G>A 853A>T) ATT269TTA (854A>T 856T>A) TAT270TAC (859T>C) TAT271CAA (860T>C 862T>A) AAT274GAC (869A>G 871T>C) TTA275ATG (872T>A 874A>G) AAA277CAT (878A>C 880A>T) AGT278GAG (881A>G 882G>A 883T>G) AAA279AAG (886A>G) ATT281ATA (892T>A) ATA282ATT (895A>T) TAT283TAC (898T>C) ATC285GTA (902A>G 904C>A) TCT287TCA (910T>A) GCT288GCA (913T>A) CCA289CCT (916A>T) TCT290TCA (919T>A) TAT294CAC (929T>C 931T>C) GAC295GAT (934C>T) GTT296GTC (937T>C) CAT298CAA (943T>A) TAT299TAC (946T>C) TCC300TCT (949C>T) GAT301AAT (950G>A) TTT302TTA (955T>A) TTC303AAG (956T>A 957T>A 958C>G) GAA305GAG (964A>G) ACT306ACA (967T>A) GAT308GAC (973T>C) GAC311GAT (982C>T) TAT314TAC (991T>C) TCA315TCT (994A>T) TCA316GAT (995T>G 996C>A 997A>T) ATC317TTG (998A>T 1000C>G) CAC319CAT (1006C>T) TTA322TTG (1015A>G) TTT324TAT (1020T>A) AAT326AGT (1026A>G) GAT327GAC (1030T>C) GTG328GTA (1033G>A) AAG329ACC (1035A>C 1036G>C) CTG331CTT (1042G>T) AAG332AAA (1045G>A) AAC334AAT (1051C>T) TCA335TCG (1054A>G) TTG337TTA (1060G>A) ATT339GTA (1064A>G 1066T>A) AGA342CGA (1073A>C) ACC343ACG (1078C>G) AGG345AGA (1084G>A) GGC346GAA (1086G>A 1087C>A) GCT348ACA (1091G>A 1093T>A) AAA352GCG (1103A>G 1104A>C 1105A>G) AGA354AGG (1111A>G) ACA356ATT (1116C>T 1117A>T) GTA357GTG (1120A>G) GAA359GAG (1126A>G) ATT362ATA (1135T>A) GAC366AAT (1145G>A 1147C>T) ATA367ATC (1150A>C) GCT368GCA (1153T>A) TAT369TAC (1156T>C) GAA370AAA (1157G>A) TAT371TAC (1162T>C) CGA373TCC (1166C>T 1167G>C 1168A>C) ACG374ACA (1171G>A) GGT375GGA (1174T>A) GCG377GCT (1180G>T) AAG378AAA (1183G>A) GTG379GTA (1186G>A) AAG383AAA (1198G>A) ACA385ACT (1204A>T) GCT386GCC (1207T>C) TTG389TTA (1216G>A) CTG391CTA (1222G>A) ATT393ATA (1228T>A) TCA394TCT (1231A>T) GCT395GCA (1234T>A) TTA397CTA (1238T>C) CTG398CTA (1243G>A) CAC399CAT (1246C>T) CAC400CAT (1249C>T) ACG403ACA (1258G>A) ATA405ATT (1264A>T) AGA406AGG (1267A>G) TTA412ATA (1283T>A) CTA413ATG (1286C>A 1288A>G) ACT415ATA (1293C>T 1294T>A) TTA418TCT (1302T>C 1303A>T) ACT419AAA (1305C>A 1306T>A) AAC420AAT (1309C>T) AGG422AAA (1314G>A 1315G>A) AGG423CGA (1316A>C 1318G>A) TTC424TTT (1321C>T) ATT425ATA (1324T>A) CCT426CCG (1327T>G) AAA427AAG (1330A>G) TTT433TAT (1347T>A) ATA434ATT (1351A>T) ATA437GTA (1358A>G) ATA438ATT (1363A>T) GAA440GAG (1369A>G) AAT441AAC (1372T>C) TTT443TTC (1378T>C) ATT444ATA (1381T>A) CCA447CCG (1390A>G) GTA450TTG (1397G>T 1399A>G) GTA452ACG (1403G>A 1404T>C 1405A>G) CTG453TTA (1406C>T 1408G>A) AAT454AGG (1410A>G 1411T>G) GAT455AAT (1412G>A) AGT456GAA (1415A>G 1416G>A 1417T>A) ATT458GTG (1421A>G 1423T>G) GTA459GTT (1426A>T) GCG460GCA (1429G>A) TAT462TAC (1435T>C) TTA464CTG (1439T>C 1441A>G) TCA465TCT (1444A>T) AAT466AAC (1447T>C) GAT467GAC (1450T>C) TCA472GAG (1463T>G 1464C>A 1465A>G) GAA473GAT (1468A>T) GTA474GTG (1471A>G) ATT475ATA (1474T>A) TTA477TTG (1480A>G) ATT478GTT (1481A>G) AAT479AAC (1486T>C) AAA482AAG (1495A>G) CAA483AAT (1496C>A 1498A>T) TCT484GCG (1499T>G 1501T>G) CTA485TTA (1502C>T) GTT488GTG (1513T>G) AGA489AGG (1516A>G) ACG493ACA (1528G>A) AAG495AAA (1534G>A) GTT500GTG (1549T>G) TTC502TTT (1555C>T) AAT504GAT (1559A>G) ATC505ATT (1564C>T) GAT507GAC (1570T>C) ACC509ACT (1576C>T) CTT511TTG (1580C>T 1582T>G) ACC513ACT (1588C>T) GAC514GAT (1591C>T) TTT515TTC (1594T>C) GAT516GAA (1597T>A) ACC517ACG (1600C>G) AAA518AAT (1603A>T) GAA519GAG (1606A>G) GCT520TCA (1607G>T 1609T>A) ATT522ATC (1615T>C) ACT523ACG (1618T>G) TAC525TAT (1624C>T) GAC526GAT (1627C>T) GGA530GGT (1639A>T) CTC531ATG (1640C>A 1642C>G) GGT533GGC (1648T>C) TTG534TTA (1651G>A) TCT535TCA (1654T>A) TCG537TCA (1660G>A) GCA539GCT (1666A>T) ACA543ACT (1678A>T) GGG544GGA (1681G>A) TTA548CTG (1691T>C 1693A>G) TTA551TTG (1702A>G) AGT552AGC (1705T>C) ACA554ACT (1711A>T) GAT555AAT (1712G>A) AAG556AAA (1717G>A) TAT558TTT (1722A>T) GCT564GCG (1741T>G) CAC566CAT (1747C>T) ACC567ATG (1749C>T 1750C>G) TCG570TCA (1759G>A) AGA572CGG (1763A>C 1765A>G) CAC574CAT (1771C>T) ATT576ATA (1777T>A) AGG577CGA (1778A>C 1780G>A) TCT581TCA (1792T>A) GCT582GCG (1795T>G) TAT588TAC (1813T>C) ATA589ATT (1816A>T) TTG593TTA (1828G>A) TCC594TCA (1831C>A) CTA600TTA (1847C>T) ATT601ATA (1852T>A) ACT603ACG (1858T>G) ATA605GTT (1862A>G 1864A>T) TCA608TCG (1873A>G) TCA610TCT (1879A>T) GGT611GGA (1882T>A) GTA613GTG (1888A>G) TAT614TAC (1891T>C) GCT616GCA (1897T>A) TTA617TTG (1900A>G) TTT626TTC (1927T>C) AAA629AAG (1936A>G) CGC630CGA (1939C>A) ATT632ATA (1945T>A) TAT633TAC (1948T>C) TCT636GCA (1955T>G 1957T>A) ATA637ACA (1959T>C) GAT638AAC (1961G>A 1963T>C) AAA639AAG (1966A>G) GTT640GCT (1968T>C) GAT641GGC (1971A>G 1972T>C) ATA642ATT (1975A>T) GGA644GGC (1981A>C) GGA645GGC (1984A>C) AAG646AGA (1986A>G 1987G>A) TAT647TAC (1990T>C) CTC650CAT (1998T>A 1999C>T) GCA651GCT (2002A>T) CCA652CCG (2005A>G) GAA654GAG (2011A>G) TTA655TTG (2014A>G) TAT657TAC (2020T>C) TCA661TCG (2032A>G) AAA663AAG (2038A>G) TTT665TTC (2044T>C) GCT666GCA (2047T>A) ACA667AAA (2049C>A) CAG669CAA (2056G>A) GAC671GAT (2062C>T) ACT673ACA (2068T>A) TTG675CTA (2072T>C 2074G>A) TCA678TCG (2083A>G) AAC679AAT (2086C>T) GAG682GAA (2095G>A) AAT683GAT (2096A>G) TAT684TAC (2101T>C) ACA687AAA (2109C>A) GTA688GTG (2113A>G) TAT689TAC (2116T>C) GCT694GCC (2131T>C) GAT695GAC (2134T>C) AAT698AAC (2143T>C) ATC701ATT (2152C>T) ATA703ATT (2158A>T) CAA704AAG (2159C>A 2161A>G) TTT705TTC (2164T>C) AGA706AAA (2166G>A) AAA711GAA (2180A>G) ATA716GTA (2195A>G) TTA719CTT (2204T>C 2206A>T) ACC720ACA (2209C>A) TTC721TTT (2212C>T) GGA722GGT (2215A>T) CAT725AAT (2222C>A) TCT727TCA (2230T>A) AAC729TCC (2234A>T 2235A>C) CCA732CCG (2245A>G) GAC733GAT (2248C>T) GTG734GTA (2251G>A) ATT735GTA (2252A>G 2254T>A) GAC736GCA (2256A>C 2257C>A) ATA737ATT (2260A>T) CTA738TTA (2261C>T) ATA740AAG (2268T>A 2269A>G) ATG741TTT (2270A>T 2272G>T) AAG742AAA (2275G>A) AAT743AGT (2277A>G) TTA745TTG (2284A>G) AAA747AGA (2289A>G) ATT750GTA (2297A>G 2299T>A) ACG751ACC (2302G>C) ACC752ACA (2305C>A) ACA755ACG (2314A>G) TTA758TTG (2323A>G) GGA761GAA (2331G>A) TAC763TAT (2338C>T) GTA764GTG (2341A>G) AAT766AAC (2347T>C) GTT767GTA (2350T>A) GGA769GGT (2356A>T) GTA770GTG (2359A>G) TCT772TCA (2365T>A) TAC774TAT (2371C>T) ATC777CTT (2378A>C 2380C>T) TAT778TAC (2383T>C) AAC779AAT (2386C>T) GTA780GCA (2388T>C) TTT781TTC (2392T>C) AAT784GAG (2399A>G 2401T>G) ATA786ATT (2407A>T) ACT787ACG (2410T>G) GGC789GGA (2416C>A) TCC791TCA (2422C>A) AGC801AGT (2452C>T) AAT803AGT (2457A>G) ATG805AAG (2463T>A) AGA806AAA (2466G>A) ACA807GTA (2468A>G 2469C>T) GTA808GTG (2473A>G) AGG809AGA (2476G>A) GAG811GAT (2482G>T) ACT812AGT (2484C>G) ACT813ACG (2488T>G) AAA814CGA (2489A>C 2490A>G) TTA815TTG (2494A>G) CAA816AAC (2495C>A 2497A>C) ATT817ATA (2500T>A) AAA818GAC (2501A>G 2503A>C) TCC819TTT (2505C>T 2506C>T) ATT820ATA (2509T>A) TTA822TTG (2515A>G) AGA823AGG (2518A>G) AAG824AAA (2521G>A) ATT825ATA (2524T>A) AAG826AAA (2527G>A) GGT827GGC (2530T>C) TTT831TTC (2542T>C) GTT834ACT (2549G>A 2550T>C)
Proteins
1836100%508988.2%836 (100%)709 (84.8%)0/0/0/01
Protein mutations:
V19I (104G>A 106C>A) V21T (110G>A 111T>C) D24E (121T>A) S28D (131A>G 132G>A 133T>C) I50V (197A>G) E54Q (209G>C) I64V (239A>G 241T>A) A65E (243C>A 244T>A) L66I (245T>A) S68E (251T>G 252C>A 253A>G) L69M (254C>A 256T>G) E70D (259A>T) E85I (302G>A 303A>T 304A>T) L86D (305C>G 306T>A 307T>C) I89V (314A>G 316A>T) I109V (374A>G) E116D (397A>C) S132N (444G>A) E133D (448A>C) L153A (506C>G 507T>C) E161N (530G>A 532A>T) A162E (534C>A 535G>A) M169I (556G>A) P197K (638C>A 639C>A 640A>G) S198T (641T>A 643A>G) L200V (647T>G 649G>A) K201S (650A>T 651A>C) E202D (655A>T) K204S (660A>G 661G>T) N205R (663A>G 664T>A) N221D (710A>G) Y222H (713T>C 715T>C) T224S (719A>T 721T>A) A232P (743G>C 745G>C) I251L (800A>C) A268T (851G>A 853A>T) I269L (854A>T 856T>A) Y271Q (860T>C 862T>A) N274D (869A>G 871T>C) L275M (872T>A 874A>G) K277H (878A>C 880A>T) S278E (881A>G 882G>A 883T>G) I285V (902A>G 904C>A) Y294H (929T>C 931T>C) H298Q (943T>A) D301N (950G>A) F302L (955T>A) F303K (956T>A 957T>A 958C>G) S316D (995T>G 996C>A 997A>T) I317L (998A>T 1000C>G) F324Y (1020T>A) N326S (1026A>G) K329T (1035A>C 1036G>C) I339V (1064A>G 1066T>A) G346E (1086G>A 1087C>A) A348T (1091G>A 1093T>A) K352A (1103A>G 1104A>C 1105A>G) T356I (1116C>T 1117A>T) D366N (1145G>A 1147C>T) E370K (1157G>A) R373S (1166C>T 1167G>C 1168A>C) L412I (1283T>A) L413M (1286C>A 1288A>G) T415I (1293C>T 1294T>A) L418S (1302T>C 1303A>T) T419K (1305C>A 1306T>A) R422K (1314G>A 1315G>A) F433Y (1347T>A) I437V (1358A>G) V450L (1397G>T 1399A>G) V452T (1403G>A 1404T>C 1405A>G) N454R (1410A>G 1411T>G) D455N (1412G>A) S456E (1415A>G 1416G>A 1417T>A) I458V (1421A>G 1423T>G) S472E (1463T>G 1464C>A 1465A>G) E473D (1468A>T) I478V (1481A>G) Q483N (1496C>A 1498A>T) S484A (1499T>G 1501T>G) N504D (1559A>G) D516E (1597T>A) K518N (1603A>T) A520S (1607G>T 1609T>A) L531M (1640C>A 1642C>G) D555N (1712G>A) Y558F (1722A>T) T567M (1749C>T 1750C>G) I605V (1862A>G 1864A>T) S636A (1955T>G 1957T>A) I637T (1959T>C) D638N (1961G>A 1963T>C) V640A (1968T>C) D641G (1971A>G 1972T>C) K646R (1986A>G 1987G>A) L650H (1998T>A 1999C>T) T667K (2049C>A) N683D (2096A>G) T687K (2109C>A) Q704K (2159C>A 2161A>G) R706K (2166G>A) K711E (2180A>G) I716V (2195A>G) H725N (2222C>A) N729S (2234A>T 2235A>C) I735V (2252A>G 2254T>A) D736A (2256A>C 2257C>A) I740K (2268T>A 2269A>G) M741F (2270A>T 2272G>T) N743S (2277A>G) K747R (2289A>G) I750V (2297A>G 2299T>A) G761E (2331G>A) I777L (2378A>C 2380C>T) V780A (2388T>C) N784E (2399A>G 2401T>G) N803S (2457A>G) M805K (2463T>A) R806K (2466G>A) T807V (2468A>G 2469C>T) E811D (2482G>T) T812S (2484C>G) K814R (2489A>C 2490A>G) Q816N (2495C>A 2497A>C) K818D (2501A>G 2503A>C) S819F (2505C>T 2506C>T) V834T (2549G>A 2550T>C)
Codon mutations:
CTA4TTA (59C>T) CAC8CAT (73C>T) CAA12CAG (85A>G) GTG13GTA (88G>A) GCA15GCG (94A>G) GTC19ATA (104G>A 106C>A) TAC20TAT (109C>T) GTT21ACT (110G>A 111T>C) GAT24GAA (121T>A) ACA25ACC (124A>C) AGT28GAC (131A>G 132G>A 133T>C) TAT29TAC (136T>C) GAA30GAG (139A>G) GCT32GCA (145T>A) ATC35ATT (154C>T) CTT38CTC (163T>C) ACG39ACT (166G>T) ACC40ACA (169C>A) ATT43ATA (178T>A) TTA44TTG (181A>G) TAC45TAT (184C>T) TTA46CTA (185T>C) ATT50GTT (197A>G) AAA51AAG (202A>G) TTA53TTG (208A>G) GAA54CAA (209G>C) TTA56TTG (217A>G) AAG58AAA (223G>A) TCA59TCT (226A>T) GGA60GGT (229A>T) GCA63GCG (238A>G) ATT64GTA (239A>G 241T>A) GCT65GAA (243C>A 244T>A) TTA66ATA (245T>A) CAA67CAG (250A>G) TCA68GAG (251T>G 252C>A 253A>G) CTT69ATG (254C>A 256T>G) GAA70GAT (259A>T) TTA72TTG (265A>G) TTC73TTT (268C>T) ACA74ACG (271A>G) TTA75CTA (272T>C) ATA76ATT (277A>T) AGG77AGA (280G>A) TGT78TGC (283T>C) AAT79AAC (286T>C) ACT81ACA (292T>A) GAA85ATT (302G>A 303A>T 304A>T) CTT86GAC (305C>G 306T>A 307T>C) GAT87GAC (310T>C) ATA88ATT (313A>T) ATA89GTT (314A>G 316A>T) TAT90TAC (319T>C) TTA91CTT (320T>C 322A>T) TAT96TAC (337T>C) ACC98ACT (343C>T) GAA101GAG (352A>G) ATT102ATA (355T>A) AGA103AGG (358A>G) ACA104ACT (361A>T) GAC105GAT (364C>T) ATA109GTA (374A>G) ACA110ACT (379A>T) ATT114ATA (391T>A) GAA116GAC (397A>C) CTA119TTA (404C>T) CCT120CCA (409T>A) TTA124CTG (419T>C 421A>G) ACA125ACG (424A>G) GGT128GGA (433T>A) AAT130AAC (439T>C) AGT132AAT (444G>A) GAA133GAC (448A>C) ACT134ACA (451T>A) GGA136GGG (457A>G) CAT137CAC (460T>C) TCA141TCT (472A>T) AAC146AAT (487C>T) GCT147GCA (490T>A) GCA148GCT (493A>T) ACA149ACG (496A>G) GAT150GAC (499T>C) CTA153GCA (506C>G 507T>C) ATT155ATA (514T>A) TAC157TAT (520C>T) GAA161AAT (530G>A 532A>T) GCG162GAA (534C>A 535G>A) TTT168TTC (553T>C) ATG169ATA (556G>A) TTA170CTT (557T>C 559A>T) AAG172AAA (565G>A) ATA173ATC (568A>C) AAG174AAA (571G>A) AGA176AGG (577A>G) ACT178ACG (583T>G) TCG180TCA (589G>A) TTG181CTG (590T>C) CCT182CCA (595T>A) GCT184GCG (601T>G) TCT187TCG (610T>G) AAC188AAT (613C>T) AGA189CGT (614A>C 616A>T) GTA190GTG (619A>G) TTT191TTC (622T>C) AGG192AGA (625G>A) GAT193GAC (628T>C) AAG194AAA (631G>A) TTC196TTT (637C>T) CCA197AAG (638C>A 639C>A 640A>G) TCA198ACG (641T>A 643A>G) TTA199CTA (644T>C) TTG200GTA (647T>G 649G>A) AAA201TCA (650A>T 651A>C) GAA202GAT (655A>T) CAT203CAC (658T>C) AAG204AGT (660A>G 661G>T) AAT205AGA (663A>G 664T>A) GTG207GTT (670G>T) GGT210GGA (679T>A) CCG211CCA (682G>A) CGT212AGA (683C>A 685T>A) ACA218ACT (703A>T) TTA220CTA (707T>C) AAT221GAT (710A>G) TAT222CAC (713T>C 715T>C) CCA223CCG (718A>G) ACT224TCA (719A>T 721T>A) AAA226AAG (727A>G) GGT231GGA (742T>A) GCG232CCC (743G>C 745G>C) GTA235GTT (754A>T) ACT238ACG (763T>G) AAA240AAG (769A>G) TTA241CTT (770T>C 772A>T) GAA244GAG (781A>G) CGA245AGA (782C>A) TTA247CTC (788T>C 790A>C) AAA249AAG (796A>G) AGG250AGA (799G>A) ATA251CTA (800A>C) TCT252TCG (805T>G) CAG253CAA (808G>A) GAT255GAC (814T>C) AAA260AAG (829A>G) AAT261AAC (832T>C) CTG263CTA (838G>A) GTT265GTA (844T>A) CTT266TTA (845C>T 847T>A) GCA268ACT (851G>A 853A>T) ATT269TTA (854A>T 856T>A) TAT270TAC (859T>C) TAT271CAA (860T>C 862T>A) AAT274GAC (869A>G 871T>C) TTA275ATG (872T>A 874A>G) AAA277CAT (878A>C 880A>T) AGT278GAG (881A>G 882G>A 883T>G) AAA279AAG (886A>G) ATT281ATA (892T>A) ATA282ATT (895A>T) TAT283TAC (898T>C) ATC285GTA (902A>G 904C>A) TCT287TCA (910T>A) GCT288GCA (913T>A) CCA289CCT (916A>T) TCT290TCA (919T>A) TAT294CAC (929T>C 931T>C) GAC295GAT (934C>T) GTT296GTC (937T>C) CAT298CAA (943T>A) TAT299TAC (946T>C) TCC300TCT (949C>T) GAT301AAT (950G>A) TTT302TTA (955T>A) TTC303AAG (956T>A 957T>A 958C>G) GAA305GAG (964A>G) ACT306ACA (967T>A) GAT308GAC (973T>C) GAC311GAT (982C>T) TAT314TAC (991T>C) TCA315TCT (994A>T) TCA316GAT (995T>G 996C>A 997A>T) ATC317TTG (998A>T 1000C>G) CAC319CAT (1006C>T) TTA322TTG (1015A>G) TTT324TAT (1020T>A) AAT326AGT (1026A>G) GAT327GAC (1030T>C) GTG328GTA (1033G>A) AAG329ACC (1035A>C 1036G>C) CTG331CTT (1042G>T) AAG332AAA (1045G>A) AAC334AAT (1051C>T) TCA335TCG (1054A>G) TTG337TTA (1060G>A) ATT339GTA (1064A>G 1066T>A) AGA342CGA (1073A>C) ACC343ACG (1078C>G) AGG345AGA (1084G>A) GGC346GAA (1086G>A 1087C>A) GCT348ACA (1091G>A 1093T>A) AAA352GCG (1103A>G 1104A>C 1105A>G) AGA354AGG (1111A>G) ACA356ATT (1116C>T 1117A>T) GTA357GTG (1120A>G) GAA359GAG (1126A>G) ATT362ATA (1135T>A) GAC366AAT (1145G>A 1147C>T) ATA367ATC (1150A>C) GCT368GCA (1153T>A) TAT369TAC (1156T>C) GAA370AAA (1157G>A) TAT371TAC (1162T>C) CGA373TCC (1166C>T 1167G>C 1168A>C) ACG374ACA (1171G>A) GGT375GGA (1174T>A) GCG377GCT (1180G>T) AAG378AAA (1183G>A) GTG379GTA (1186G>A) AAG383AAA (1198G>A) ACA385ACT (1204A>T) GCT386GCC (1207T>C) TTG389TTA (1216G>A) CTG391CTA (1222G>A) ATT393ATA (1228T>A) TCA394TCT (1231A>T) GCT395GCA (1234T>A) TTA397CTA (1238T>C) CTG398CTA (1243G>A) CAC399CAT (1246C>T) CAC400CAT (1249C>T) ACG403ACA (1258G>A) ATA405ATT (1264A>T) AGA406AGG (1267A>G) TTA412ATA (1283T>A) CTA413ATG (1286C>A 1288A>G) ACT415ATA (1293C>T 1294T>A) TTA418TCT (1302T>C 1303A>T) ACT419AAA (1305C>A 1306T>A) AAC420AAT (1309C>T) AGG422AAA (1314G>A 1315G>A) AGG423CGA (1316A>C 1318G>A) TTC424TTT (1321C>T) ATT425ATA (1324T>A) CCT426CCG (1327T>G) AAA427AAG (1330A>G) TTT433TAT (1347T>A) ATA434ATT (1351A>T) ATA437GTA (1358A>G) ATA438ATT (1363A>T) GAA440GAG (1369A>G) AAT441AAC (1372T>C) TTT443TTC (1378T>C) ATT444ATA (1381T>A) CCA447CCG (1390A>G) GTA450TTG (1397G>T 1399A>G) GTA452ACG (1403G>A 1404T>C 1405A>G) CTG453TTA (1406C>T 1408G>A) AAT454AGG (1410A>G 1411T>G) GAT455AAT (1412G>A) AGT456GAA (1415A>G 1416G>A 1417T>A) ATT458GTG (1421A>G 1423T>G) GTA459GTT (1426A>T) GCG460GCA (1429G>A) TAT462TAC (1435T>C) TTA464CTG (1439T>C 1441A>G) TCA465TCT (1444A>T) AAT466AAC (1447T>C) GAT467GAC (1450T>C) TCA472GAG (1463T>G 1464C>A 1465A>G) GAA473GAT (1468A>T) GTA474GTG (1471A>G) ATT475ATA (1474T>A) TTA477TTG (1480A>G) ATT478GTT (1481A>G) AAT479AAC (1486T>C) AAA482AAG (1495A>G) CAA483AAT (1496C>A 1498A>T) TCT484GCG (1499T>G 1501T>G) CTA485TTA (1502C>T) GTT488GTG (1513T>G) AGA489AGG (1516A>G) ACG493ACA (1528G>A) AAG495AAA (1534G>A) GTT500GTG (1549T>G) TTC502TTT (1555C>T) AAT504GAT (1559A>G) ATC505ATT (1564C>T) GAT507GAC (1570T>C) ACC509ACT (1576C>T) CTT511TTG (1580C>T 1582T>G) ACC513ACT (1588C>T) GAC514GAT (1591C>T) TTT515TTC (1594T>C) GAT516GAA (1597T>A) ACC517ACG (1600C>G) AAA518AAT (1603A>T) GAA519GAG (1606A>G) GCT520TCA (1607G>T 1609T>A) ATT522ATC (1615T>C) ACT523ACG (1618T>G) TAC525TAT (1624C>T) GAC526GAT (1627C>T) GGA530GGT (1639A>T) CTC531ATG (1640C>A 1642C>G) GGT533GGC (1648T>C) TTG534TTA (1651G>A) TCT535TCA (1654T>A) TCG537TCA (1660G>A) GCA539GCT (1666A>T) ACA543ACT (1678A>T) GGG544GGA (1681G>A) TTA548CTG (1691T>C 1693A>G) TTA551TTG (1702A>G) AGT552AGC (1705T>C) ACA554ACT (1711A>T) GAT555AAT (1712G>A) AAG556AAA (1717G>A) TAT558TTT (1722A>T) GCT564GCG (1741T>G) CAC566CAT (1747C>T) ACC567ATG (1749C>T 1750C>G) TCG570TCA (1759G>A) AGA572CGG (1763A>C 1765A>G) CAC574CAT (1771C>T) ATT576ATA (1777T>A) AGG577CGA (1778A>C 1780G>A) TCT581TCA (1792T>A) GCT582GCG (1795T>G) TAT588TAC (1813T>C) ATA589ATT (1816A>T) TTG593TTA (1828G>A) TCC594TCA (1831C>A) CTA600TTA (1847C>T) ATT601ATA (1852T>A) ACT603ACG (1858T>G) ATA605GTT (1862A>G 1864A>T) TCA608TCG (1873A>G) TCA610TCT (1879A>T) GGT611GGA (1882T>A) GTA613GTG (1888A>G) TAT614TAC (1891T>C) GCT616GCA (1897T>A) TTA617TTG (1900A>G) TTT626TTC (1927T>C) AAA629AAG (1936A>G) CGC630CGA (1939C>A) ATT632ATA (1945T>A) TAT633TAC (1948T>C) TCT636GCA (1955T>G 1957T>A) ATA637ACA (1959T>C) GAT638AAC (1961G>A 1963T>C) AAA639AAG (1966A>G) GTT640GCT (1968T>C) GAT641GGC (1971A>G 1972T>C) ATA642ATT (1975A>T) GGA644GGC (1981A>C) GGA645GGC (1984A>C) AAG646AGA (1986A>G 1987G>A) TAT647TAC (1990T>C) CTC650CAT (1998T>A 1999C>T) GCA651GCT (2002A>T) CCA652CCG (2005A>G) GAA654GAG (2011A>G) TTA655TTG (2014A>G) TAT657TAC (2020T>C) TCA661TCG (2032A>G) AAA663AAG (2038A>G) TTT665TTC (2044T>C) GCT666GCA (2047T>A) ACA667AAA (2049C>A) CAG669CAA (2056G>A) GAC671GAT (2062C>T) ACT673ACA (2068T>A) TTG675CTA (2072T>C 2074G>A) TCA678TCG (2083A>G) AAC679AAT (2086C>T) GAG682GAA (2095G>A) AAT683GAT (2096A>G) TAT684TAC (2101T>C) ACA687AAA (2109C>A) GTA688GTG (2113A>G) TAT689TAC (2116T>C) GCT694GCC (2131T>C) GAT695GAC (2134T>C) AAT698AAC (2143T>C) ATC701ATT (2152C>T) ATA703ATT (2158A>T) CAA704AAG (2159C>A 2161A>G) TTT705TTC (2164T>C) AGA706AAA (2166G>A) AAA711GAA (2180A>G) ATA716GTA (2195A>G) TTA719CTT (2204T>C 2206A>T) ACC720ACA (2209C>A) TTC721TTT (2212C>T) GGA722GGT (2215A>T) CAT725AAT (2222C>A) TCT727TCA (2230T>A) AAC729TCC (2234A>T 2235A>C) CCA732CCG (2245A>G) GAC733GAT (2248C>T) GTG734GTA (2251G>A) ATT735GTA (2252A>G 2254T>A) GAC736GCA (2256A>C 2257C>A) ATA737ATT (2260A>T) CTA738TTA (2261C>T) ATA740AAG (2268T>A 2269A>G) ATG741TTT (2270A>T 2272G>T) AAG742AAA (2275G>A) AAT743AGT (2277A>G) TTA745TTG (2284A>G) AAA747AGA (2289A>G) ATT750GTA (2297A>G 2299T>A) ACG751ACC (2302G>C) ACC752ACA (2305C>A) ACA755ACG (2314A>G) TTA758TTG (2323A>G) GGA761GAA (2331G>A) TAC763TAT (2338C>T) GTA764GTG (2341A>G) AAT766AAC (2347T>C) GTT767GTA (2350T>A) GGA769GGT (2356A>T) GTA770GTG (2359A>G) TCT772TCA (2365T>A) TAC774TAT (2371C>T) ATC777CTT (2378A>C 2380C>T) TAT778TAC (2383T>C) AAC779AAT (2386C>T) GTA780GCA (2388T>C) TTT781TTC (2392T>C) AAT784GAG (2399A>G 2401T>G) ATA786ATT (2407A>T) ACT787ACG (2410T>G) GGC789GGA (2416C>A) TCC791TCA (2422C>A) AGC801AGT (2452C>T) AAT803AGT (2457A>G) ATG805AAG (2463T>A) AGA806AAA (2466G>A) ACA807GTA (2468A>G 2469C>T) GTA808GTG (2473A>G) AGG809AGA (2476G>A) GAG811GAT (2482G>T) ACT812AGT (2484C>G) ACT813ACG (2488T>G) AAA814CGA (2489A>C 2490A>G) TTA815TTG (2494A>G) CAA816AAC (2495C>A 2497A>C) ATT817ATA (2500T>A) AAA818GAC (2501A>G 2503A>C) TCC819TTT (2505C>T 2506C>T) ATT820ATA (2509T>A) TTA822TTG (2515A>G) AGA823AGG (2518A>G) AAG824AAA (2521G>A) ATT825ATA (2524T>A) AAG826AAA (2527G>A) GGT827GGC (2530T>C) TTT831TTC (2542T>C) GTT834ACT (2549G>A 2550T>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43