NGS Details (SRR3458562_Metagenome_example): Acanthamoeba polyphaga mimivirus

Assembly

995986 (1707 contig(s))
13.2
123659
7979.03 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Acanthamoeba polyphaga mimivirus (Taxonomy ID: 212035)
99.9497
99.5463
754
979

Alignment

1989707.0 (NT) + 2073739.0 (AA) = 4063446.0
99.8903
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT27118126184.3%198970799.9%995964 (99.9%)995467 (99.9%)4/22
Mutations:1578G>A, 2324C>T, 4037C>G, 5053A>G, 7625T>G, 7626T>G, 7903T>C, 8372T>C, 13004T>A, 13060A>T, 14400T>C, 15910T>C, 16981T>A, 19615T>C, 34445T>C, 34450T>G, 35521A>G, 39021T>C, 40624T>C, 44588A>T, 47862A>G, 55474T>C, 58517A>G, 65254T>A, 65642T>G, 67722A>G, 71288T>C, 71594T>C, 71599A>G, 71998A>G, 76636_76637insT, 77608delA, 77903T>C, 80886T>C, 80890A>G, 80907A>G, 83420A>C, 84434A>G, 85182A>C, 90547A>C, 95024A>G, 98319C>T, 102603A>T, 103847G>T, 106228T>G, 113568T>C, 114622G>A, 119721T>C, 120676T>G, 124488C>A, 125356_125357delTA, 126651A>T, 126655C>T, 127171T>C, 132346A>G, 132879T>A, 132880G>T, 136060A>G, 143774A>G, 144610A>G, 144620G>T, 151754T>C, 157250delA, 158484C>T, 158628T>C, 165374C>T, 165545T>C, 171722A>G, 177111T>C, 182684T>C, 183051delA, 188179T>C, 190223A>G, 190617A>T, 191747C>T, 194809A>G, 196093T>C, 196166A>G, 197192T>C, 201731T>G, 202664T>A, 205173A>T, 208825T>C, 213179T>C, 215396T>G, 216624T>C, 221845G>T, 226551G>A, 227770G>A, 230730A>G, 242773A>G, 243554A>G, 246983A>T, 250693A>G, 254946A>T, 256040A>C, 256047T>C, 261720A>T, 262183A>G, 262184T>G, 263405A>T, 266288T>C, 266357A>G, 266470T>C, 267407T>C, 267968T>C, 268005T>C, 268029T>G, 272910T>A, 278161A>G, 278677A>T, 287337C>T, 303027T>C, 305631A>C, 308098T>C, 308105T>C, 309778A>G, 316604C>T, 317085delT, 317690T>A, 317695A>T, 318738A>G, 319891C>A, 321550T>G, 321557A>G, 325263A>G, 325299T>C, 332239C>G, 334419T>C, 338145T>C, 339208A>T, 344614G>C, 345776A>G, 349169C>G, 351016T>A, 352719T>C, 357955T>A, 357956G>A, 359204T>G, 364251G>A, 364801A>G, 364948A>G, 366169_366170insC, 369071A>G, 369923delA, 374447A>G, 377697T>A, 378877C>T, 379347G>A, 384711A>T, 385643A>T, 390115A>G, 393649A>G, 395377T>C, 395647T>A, 400422A>G, 400832T>A, 400844A>G, 402357A>G, 403464T>C, 404119A>G, 404281A>G, 407146T>C, 407222A>G, 408447T>C, 408829A>G, 409536A>G, 409797A>T, 411965A>T, 411984A>T, 413583T>A, 416533A>G, 417299A>G, 417968T>G, 418159T>C, 420319T>A, 422160A>T, 423936G>T, 424106A>G, 424571A>G, 424576C>A, 426878A>G, 430471C>T, 430472A>C, 431070A>T, 432708_432710delGTT, 432837A>G, 433553T>A, 434810_434811insT, 435270A>C, 436336A>T, 449710T>C, 454298C>T, 455496C>A, 457771A>G, 461486A>T, 461488A>G, 461589T>C, 461937A>T, 462124A>G, 462138A>G, 464342T>A, 465660T>C, 465665T>C, 466924A>T, 467394T>C, 469900A>T, 473148A>G, 473157A>G, 474296A>G, 475816A>G, 481292A>G, 481725C>T, 485834G>A, 485937T>A, 486602T>C, 486736T>C, 487277A>T, 487826G>A, 489064T>C, 489779T>A, 491415A>G, 491486T>C, 491760T>C, 491978T>C, 493518T>C, 494743A>G, 497384A>G, 503597T>G, 504648A>G, 508186G>A, 511089C>T, 512051A>G, 514056A>G, 514913A>T, 516416A>G, 516424T>G, 516874T>G, 525045T>A, 527155G>A, 529902T>C, 530491T>G, 530543T>A, 534626delA, 542613T>C, 543220T>C, 545972A>G, 555501A>G, 560989T>C, 564915T>C, 566376T>C, 568966G>A, 569665A>G, 571300T>C, 572155C>G, 572884T>C, 572975G>T, 578613T>A, 585944C>A, 587927G>C, 590231A>T, 590737T>C, 593520C>A, 594036A>C, 597284A>T, 598813A>G, 598980T>C, 607225C>T, 607740A>G, 607989A>G, 609361T>C, 609377A>G, 615681A>G, 617572A>G, 617573C>T, 618397A>T, 619864A>G, 620631A>C, 620636A>G, 627993T>C, 628864T>C, 633595A>C, 634788_634789insC, 640363A>G, 642174C>T, 643892T>C, 645243A>G, 645996A>G, 646104A>G, 646319C>A, 646787C>T, 650424T>C, 653784T>A, 654332G>A, 654337A>T, 655569A>G, 655950A>G, 656379A>G, 663703T>A, 663710G>A, 663717T>A, 665645A>G, 667180T>C, 667288A>G, 668095T>A, 668097C>T, 671202T>A, 675823C>T, 679601A>C, 684613A>G, 686540C>G, 690239C>G, 691552T>A, 693553T>C, 694988A>G, 696341A>G, 700012T>C, 701669A>G, 704968C>G, 704976A>G, 707645A>G, 707684delA, 711425G>A, 712831A>G, 715518T>C, 718163C>T, 718164C>T, 718590A>G, 719891A>G, 720527delT, 722278A>T, 723147T>C, 724842T>C, 729728T>A, 732612delA, 733041A>G, 735588A>C, 735594A>G, 735930C>T, 736108T>C, 737810T>G, 739076A>G, 744106A>G, 745815A>T, 753803A>T, 754115delA, 754610A>C, 762723T>A, 766244T>C, 769119A>G, 773194A>G, 774284T>C, 774551A>G, 774662G>A, 774934C>G, 777182T>G, 778243T>C, 778732C>T, 788420A>T, 788849T>C, 790391A>G, 790424T>C, 790824A>G, 796000A>G, 796059T>C, 800411T>A, 800577T>C, 801663delA, 815285A>G, 815868A>T, 816773A>C, 817189T>C, 817244G>A, 817755A>G, 818411A>T, 819072T>C, 821211A>T, 825189A>G, 825475A>T, 826056A>G, 831344T>C, 839184A>G, 839691A>G, 841972delT, 847576T>C, 847824T>A, 849289T>C, 851396C>A, 854911G>A, 857375C>A, 857997A>G, 858003A>T, 859456T>C, 863044A>G, 863205A>C, 876046A>T, 877215A>G, 877222T>G, 882009T>C, 888941T>G, 889358A>G, 893386A>G, 895592A>C, 896713G>T, 901062T>C, 902463A>C, 902899C>T, 906947T>C, 918415A>G, 918590A>G, 920520A>C, 920525T>A, 922577T>C, 923541T>C, 923548G>T, 924368A>C, 924847delT, 928292A>T, 928924T>G, 928930A>G, 929696T>C, 932315T>A, 935162T>C, 938909C>G, 939352T>C, 945890T>G, 946058C>T, 947452T>C, 948152T>C, 949869A>G, 949945T>G, 951175A>G, 952023T>C, 957087T>C, 957657T>C, 958652C>T, 960431T>C, 965573A>G, 967751A>G, 968321T>A, 969908A>G, 971978G>C, 972049delT, 975854T>A, 978026C>T, 978928G>A, 983241C>G, 984525A>G, 987098C>A, 987414A>G, 987419A>G, 993646A>G, 998441delT, 999015A>G, 999162A>T, 1001760T>A, 1005443A>T, 1005894A>G, 1009310T>C, 1009787T>C, 1011334T>C, 1012600A>T, 1013804A>G, 1014386T>C, 1018670T>A, 1019887A>G, 1023384A>G, 1023750A>G, 1024021T>A, 1027482T>C, 1028118A>G, 1035120A>G, 1042268T>A, 1043267T>G, 1047784A>G, 1051373A>G, 1060678A>G, 1061386A>C, 1062617C>T, 1069272A>G, 1074016T>C, 1082361A>T, 1082367A>G, 1083711T>A, 1083717A>G, 1084150T>C, 1090921C>A, 1091988T>G, 1091992T>G, 1094423T>C, 1095145delA, 1096303T>C, 1096311T>A, 1096651G>A, 1100208A>G, 1103204T>G, 1109558A>G, 1109601T>C, 1115863A>G, 1116869A>G, 1117329A>T, 1120559A>G, 1123906T>A, 1125638A>G, 1131988T>C, 1136983G>A, 1137412A>G, 1139183T>C, 1140085A>G, 1141266T>C, 1142214A>T, 1142399T>C, 1142432T>A, 1146500A>G, 1147424T>A, 1155982A>G, 1164483A>G, 1168625A>G, 1171067A>G, 1175699delA
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43