Version 2.22.2
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Acanthamoeba polyphaga mimivirus

Assembly

995986 (1707 contig(s))
13.2
123659
7979.03 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Acanthamoeba polyphaga mimivirus (Taxonomy ID: 212035)
99.9497
99.5463
754
979

Alignment

1989707.0 (NT) + 2073739.0 (AA) = 4063446.0
99.8903
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT27118126184.3%198970799.9%995964 (99.9%)995467 (99.9%)4/22
Mutations:
1578G>A 2324C>T 4037C>G 5053A>G 7625T>G 7626T>G 7903T>C 8372T>C 13004T>A 13060A>T 14400T>C 15910T>C 16981T>A 19615T>C 34445T>C 34450T>G 35521A>G 39021T>C 40624T>C 44588A>T 47862A>G 55474T>C 58517A>G 65254T>A 65642T>G 67722A>G 71288T>C 71594T>C 71599A>G 71998A>G 76636_76637insT 77608delA 77903T>C 80886T>C 80890A>G 80907A>G 83420A>C 84434A>G 85182A>C 90547A>C 95024A>G 98319C>T 102603A>T 103847G>T 106228T>G 113568T>C 114622G>A 119721T>C 120676T>G 124488C>A 125356_125357delTA 126651A>T 126655C>T 127171T>C 132346A>G 132879T>A 132880G>T 136060A>G 143774A>G 144610A>G 144620G>T 151754T>C 157250delA 158484C>T 158628T>C 165374C>T 165545T>C 171722A>G 177111T>C 182684T>C 183051delA 188179T>C 190223A>G 190617A>T 191747C>T 194809A>G 196093T>C 196166A>G 197192T>C 201731T>G 202664T>A 205173A>T 208825T>C 213179T>C 215396T>G 216624T>C 221845G>T 226551G>A 227770G>A 230730A>G 242773A>G 243554A>G 246983A>T 250693A>G 254946A>T 256040A>C 256047T>C 261720A>T 262183A>G 262184T>G 263405A>T 266288T>C 266357A>G 266470T>C 267407T>C 267968T>C 268005T>C 268029T>G 272910T>A 278161A>G 278677A>T 287337C>T 303027T>C 305631A>C 308098T>C 308105T>C 309778A>G 316604C>T 317085delT 317690T>A 317695A>T 318738A>G 319891C>A 321550T>G 321557A>G 325263A>G 325299T>C 332239C>G 334419T>C 338145T>C 339208A>T 344614G>C 345776A>G 349169C>G 351016T>A 352719T>C 357955T>A 357956G>A 359204T>G 364251G>A 364801A>G 364948A>G 366169_366170insC 369071A>G 369923delA 374447A>G 377697T>A 378877C>T 379347G>A 384711A>T 385643A>T 390115A>G 393649A>G 395377T>C 395647T>A 400422A>G 400832T>A 400844A>G 402357A>G 403464T>C 404119A>G 404281A>G 407146T>C 407222A>G 408447T>C 408829A>G 409536A>G 409797A>T 411965A>T 411984A>T 413583T>A 416533A>G 417299A>G 417968T>G 418159T>C 420319T>A 422160A>T 423936G>T 424106A>G 424571A>G 424576C>A 426878A>G 430471C>T 430472A>C 431070A>T 432708_432710delGTT 432837A>G 433553T>A 434810_434811insT 435270A>C 436336A>T 449710T>C 454298C>T 455496C>A 457771A>G 461486A>T 461488A>G 461589T>C 461937A>T 462124A>G 462138A>G 464342T>A 465660T>C 465665T>C 466924A>T 467394T>C 469900A>T 473148A>G 473157A>G 474296A>G 475816A>G 481292A>G 481725C>T 485834G>A 485937T>A 486602T>C 486736T>C 487277A>T 487826G>A 489064T>C 489779T>A 491415A>G 491486T>C 491760T>C 491978T>C 493518T>C 494743A>G 497384A>G 503597T>G 504648A>G 508186G>A 511089C>T 512051A>G 514056A>G 514913A>T 516416A>G 516424T>G 516874T>G 525045T>A 527155G>A 529902T>C 530491T>G 530543T>A 534626delA 542613T>C 543220T>C 545972A>G 555501A>G 560989T>C 564915T>C 566376T>C 568966G>A 569665A>G 571300T>C 572155C>G 572884T>C 572975G>T 578613T>A 585944C>A 587927G>C 590231A>T 590737T>C 593520C>A 594036A>C 597284A>T 598813A>G 598980T>C 607225C>T 607740A>G 607989A>G 609361T>C 609377A>G 615681A>G 617572A>G 617573C>T 618397A>T 619864A>G 620631A>C 620636A>G 627993T>C 628864T>C 633595A>C 634788_634789insC 640363A>G 642174C>T 643892T>C 645243A>G 645996A>G 646104A>G 646319C>A 646787C>T 650424T>C 653784T>A 654332G>A 654337A>T 655569A>G 655950A>G 656379A>G 663703T>A 663710G>A 663717T>A 665645A>G 667180T>C 667288A>G 668095T>A 668097C>T 671202T>A 675823C>T 679601A>C 684613A>G 686540C>G 690239C>G 691552T>A 693553T>C 694988A>G 696341A>G 700012T>C 701669A>G 704968C>G 704976A>G 707645A>G 707684delA 711425G>A 712831A>G 715518T>C 718163C>T 718164C>T 718590A>G 719891A>G 720527delT 722278A>T 723147T>C 724842T>C 729728T>A 732612delA 733041A>G 735588A>C 735594A>G 735930C>T 736108T>C 737810T>G 739076A>G 744106A>G 745815A>T 753803A>T 754115delA 754610A>C 762723T>A 766244T>C 769119A>G 773194A>G 774284T>C 774551A>G 774662G>A 774934C>G 777182T>G 778243T>C 778732C>T 788420A>T 788849T>C 790391A>G 790424T>C 790824A>G 796000A>G 796059T>C 800411T>A 800577T>C 801663delA 815285A>G 815868A>T 816773A>C 817189T>C 817244G>A 817755A>G 818411A>T 819072T>C 821211A>T 825189A>G 825475A>T 826056A>G 831344T>C 839184A>G 839691A>G 841972delT 847576T>C 847824T>A 849289T>C 851396C>A 854911G>A 857375C>A 857997A>G 858003A>T 859456T>C 863044A>G 863205A>C 876046A>T 877215A>G 877222T>G 882009T>C 888941T>G 889358A>G 893386A>G 895592A>C 896713G>T 901062T>C 902463A>C 902899C>T 906947T>C 918415A>G 918590A>G 920520A>C 920525T>A 922577T>C 923541T>C 923548G>T 924368A>C 924847delT 928292A>T 928924T>G 928930A>G 929696T>C 932315T>A 935162T>C 938909C>G 939352T>C 945890T>G 946058C>T 947452T>C 948152T>C 949869A>G 949945T>G 951175A>G 952023T>C 957087T>C 957657T>C 958652C>T 960431T>C 965573A>G 967751A>G 968321T>A 969908A>G 971978G>C 972049delT 975854T>A 978026C>T 978928G>A 983241C>G 984525A>G 987098C>A 987414A>G 987419A>G 993646A>G 998441delT 999015A>G 999162A>T 1001760T>A 1005443A>T 1005894A>G 1009310T>C 1009787T>C 1011334T>C 1012600A>T 1013804A>G 1014386T>C 1018670T>A 1019887A>G 1023384A>G 1023750A>G 1024021T>A 1027482T>C 1028118A>G 1035120A>G 1042268T>A 1043267T>G 1047784A>G 1051373A>G 1060678A>G 1061386A>C 1062617C>T 1069272A>G 1074016T>C 1082361A>T 1082367A>G 1083711T>A 1083717A>G 1084150T>C 1090921C>A 1091988T>G 1091992T>G 1094423T>C 1095145delA 1096303T>C 1096311T>A 1096651G>A 1100208A>G 1103204T>G 1109558A>G 1109601T>C 1115863A>G 1116869A>G 1117329A>T 1120559A>G 1123906T>A 1125638A>G 1131988T>C 1136983G>A 1137412A>G 1139183T>C 1140085A>G 1141266T>C 1142214A>T 1142399T>C 1142432T>A 1146500A>G 1147424T>A 1155982A>G 1164483A>G 1168625A>G 1171067A>G 1175699delA
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43