Version 2.14.5 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Agtrevirus EM4
Assembly
71386 (299 contig(s))
22.4
18788
1212.29 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
142582.0 (NT) + 143097.0 (AA) = 285679.0
99.929
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 116 | 160338 | 44.4% | 142582 | 99.9% | 71385 (99.9%) | 71343 (99.9%) | 1/1 | |
| Mutations: | 953A>G, 974T>C, 1029A>C, 14141A>G, 18863A>C, 64221A>G, 64324C>T, 64342C>T, 80250C>T, 80283C>T, 80295A>G, 88119T>C, 88149T>C, 88191T>C, 93648C>T, 97073G>A, 97088T>C, 97115C>T, 127031T>C, 127405C>T, 127462T>C, 127546C>T, 129523A>G, 142140T>C, 142194T>C, 148332C>T, 148429T>C, 148435A>T, 149906A>G, 149927G>A, 150016T>C, 150062A>T, 150080delT, 150395A>G, 153129C>T, 153165T>C, 153261_153262insG, 153297G>C, 155339A>G, 155340G>C, 155349G>C, 160165A>G, 160170C>T, 160181C>T | ||||||||